Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008993

Physical Location & Seq

Genomic Coordinates Reverse (-)

28869936 .. 28872282

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G289800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCAGGAGCTTTGGTCGACGTCAAGCCTACTCCGATCCTGAAGGAGGAGCTTGACATCGTGATCCCGACGATTCGAAACCTGGATTTCTTGGAGATGTGGAGGCCGTTCTTCGAGCCCTACCATCTGATCATAGTCCAGGACGGTGACCCGTCGAGGACCATCAAGGTCCCAGATGGCTTCGACTATGAGCTCTACAATCGAAACGACATCAACCGTATTCTGGGTCCCAAGGCCTCTTGCATTTCCTTCAAGGACTCTGCTTGCCGCTGCTTTGGCTACTTGGTCTCTAAGAAGAAGTACATCTTTACCATTGACGACGATTGCTTTGTTGCCAAAGACCCATCTGGGAAAGAGATCAATGCACTCGAACAACATATAAAGAACCTGCTAAATCCATCAACTCCTCTATTTTTCAACACTCTTTATGATCCATACAGAGAAGGCGCAGACTTTGTCCGTGGATATCCTTTTAGTCTCCGTGAGGGTGTCCCTACCGCTGTTTCTCATGGCCTCTGGCTCAACATCCCTGACTATGATGCTCCCACCCAGCTTGCCAAGCCTCTAGAAAGGAACACCAGGTTTGTTGATGCAGTTCTGACCATACCCAAGGGAACTCTATTTCCTATGTGTGGTATGAACTTGGCATTCAACCGTGAACTGATTGGACCAGCAATGTACTTTGGACTCATGGGTGATGGTCAGCCAATTGGAAGATATGATGATATGTGGGCTGGCTGGTGCATGAAGGTTATATGCGACCATTTGGGATATGGTGTCAAGACGGGTCTGCCCTACATATGGCACAGCAAAGCCAGCAATCCATTTGTTAACCTCAAAAAGGAGTACAATGGTATATTCTGGCAAGAAGAGCTGATCCCCTTCTTCCAATCTGCGGTCCTTACAAAAGAATGCACTACTGTTCAGCAGTGCTACATCGAACTCTCTAAGCAAGTCAAGGCTAAGCTTGGCAAGATTGACCCATACTTCCTTAAGCTGGCAGATGCCATGGTTACTTGGGTAGAAGCTTGGGATGAGCTTAACGGAAAAGTAGATGTTGATCAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009225 GO:0009506 GO:0009832 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016866 GO:0030054 GO:0033356 GO:0034641 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052691 GO:0055044 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

357

Amino Acids

40.62

Weight (kDa)

5.39

Isoelectric Point (pI)

29.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08900
fragaria_vesca	FvH4_5g13530
malus_domestica	MD06G1203900.v1.1 MD14G1215200.v1.1 MD16G1059200.v1.1
prunus_persica	Prupe.1G289800_v2.0.a1 Prupe.5G208200_v2.0.a1
pyrus_communis	pycom06g18220 pycom14g17810
rosa_chinensis	RchiOBHm_Chr7g0183461 RchiOBHm_Chr7g0183481
rosa_laevigata	RLG00000005045
rosa_multiflora	Rmu_co8378391.1_g000001 Rmu_sc0000951.1_g000003
rosa_roxburghii	Rroxscaffold_3G00270440
rosa_rugosa	Rorug06G0458100
rosa_samantha	Rh7AG059000 Rh7BG059000 Rh7DG058800 Rh7DG059200 Rh7DG059300
rosa_wichuraiana	Rw7G004860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
Acc36I	ACCTGC	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	3 cut(s)	268, 498, 896
AclWI	GGATC	4 cut(s)	31, 58, 425, 871
AcuI	CTGAAG	1 cut(s)	62
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	3 cut(s)	302, 680, 848
AfiI	CCNNNNNNNGG	7 cut(s)	46, 223, 632, 801, 841, 895, 997
AflII	CTTAAG	1 cut(s)	992
AgsI	TTSAA	3 cut(s)	253, 418, 652
AjnI	CCWGG	3 cut(s)	81, 138, 578
AloI	GAACNNNNNNTCC	2 cut(s)	607, 639
AluBI	AGCT	9 cut(s)	11, 52, 193, 553, 874, 967, 997, 1028, 1039
AluI	AGCT	9 cut(s)	11, 52, 193, 553, 874, 967, 997, 1028, 1039
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	292, 482
AlwI	GGATC	4 cut(s)	31, 58, 425, 871
AoxI	GGCC	3 cut(s)	104, 234, 511
ApeKI	GCWGC	1 cut(s)	270
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	5 cut(s)	159, 169, 227, 668, 898
AsuHPI	GGTGA	2 cut(s)	158, 707
AsuII	TTCGAA	1 cut(s)	76
AvaII	GGWCC	5 cut(s)	159, 169, 227, 668, 898
BanII	GRGCYC	2 cut(s)	120, 195
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	6 cut(s)	132, 170, 170, 352, 406, 692
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	3 cut(s)	83, 140, 580
BclI	TGATCA	2 cut(s)	129, 1060
BcoDI	GTCTC	2 cut(s)	292, 482
BfaI	CTAG	1 cut(s)	566
BfrI	CTTAAG	1 cut(s)	992
BfuAI	ACCTGC	1 cut(s)	396
BisI	GCNGC	2 cut(s)	268, 271
BlpI	GCTNAGC	1 cut(s)	963
BlsI	GCNGC	2 cut(s)	269, 272
Bme1390I	CCNGG	3 cut(s)	83, 140, 580
Bme18I	GGWCC	5 cut(s)	159, 169, 227, 668, 898
BmgT120I	GGNCC	5 cut(s)	159, 169, 227, 668, 898
BmiI	GGNNCC	3 cut(s)	171, 228, 229
BmrFI	CCNGG	3 cut(s)	83, 140, 580
BmsI	GCATC	3 cut(s)	529, 580, 994
Bpu1102I	GCTNAGC	1 cut(s)	963
Bpu14I	TTCGAA	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	1059
BsaHI	GRCGYC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	4 cut(s)	231, 460, 609, 1008
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	7 cut(s)	46, 223, 632, 801, 841, 895, 997
Bse3DI	GCAATG	1 cut(s)	681
Bse8I	GATNNNNATC	1 cut(s)	1059
BseBI	CCWGG	3 cut(s)	83, 140, 580
BseDI	CCNNGG	4 cut(s)	231, 460, 609, 1008
BseGI	GGATG	2 cut(s)	525, 1039
BseJI	GATNNNNATC	1 cut(s)	1059
BseLI	CCNNNNNNNGG	7 cut(s)	46, 223, 632, 801, 841, 895, 997
BseMI	GCAATG	1 cut(s)	681
BseRI	GAGGAG	2 cut(s)	62, 396
BseXI	GCAGC	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	549
BshFI	GGCC	3 cut(s)	106, 236, 513
BsiHKAI	GWGCWC	1 cut(s)	195
BslFI	GGGAC	3 cut(s)	155, 213, 476
BslI	CCNNNNNNNGG	7 cut(s)	46, 223, 632, 801, 841, 895, 997
BsmAI	GTCTC	2 cut(s)	292, 482
BsmFI	GGGAC	3 cut(s)	155, 213, 476
BsmI	GAATGC	2 cut(s)	647, 917
BsnI	GGCC	3 cut(s)	106, 236, 513
Bso31I	GGTCTC	1 cut(s)	292
Bsp119I	TTCGAA	1 cut(s)	76
Bsp1286I	GDGCHC	2 cut(s)	120, 195
Bsp143I	GATC	7 cut(s)	36, 63, 129, 357, 430, 876, 1060
Bsp1720I	GCTNAGC	1 cut(s)	963
Bsp19I	CCATGG	1 cut(s)	1008
BspACI	CCGC	3 cut(s)	268, 498, 896
BspANI	GGCC	3 cut(s)	106, 236, 513
BspLI	GGNNCC	3 cut(s)	171, 228, 229
BspMI	ACCTGC	1 cut(s)	396
BspPI	GGATC	4 cut(s)	31, 58, 425, 871
BspQI	GCTCTTC	1 cut(s)	864
BspT104I	TTCGAA	1 cut(s)	76
BspTI	CTTAAG	1 cut(s)	992
BspTNI	GGTCTC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	681
BssECI	CCNNGG	4 cut(s)	231, 460, 609, 1008
BssMI	GATC	7 cut(s)	36, 63, 129, 357, 430, 876, 1060
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	3 cut(s)	231, 609, 1008
Bst2UI	CCWGG	3 cut(s)	83, 140, 580
Bst4CI	ACNGT	5 cut(s)	146, 218, 656, 922, 1068
Bst6I	CTCTTC	1 cut(s)	864
BstACI	GRCGYC	1 cut(s)	21
BstAFI	CTTAAG	1 cut(s)	992
BstBI	TTCGAA	1 cut(s)	76
BstC8I	GCNNGC	5 cut(s)	265, 555, 736, 817, 999
BstDEI	CTNAG	3 cut(s)	291, 948, 963
BstDSI	CCRYGG	2 cut(s)	460, 1008
BstEII	GGTNACC	1 cut(s)	146
BstENI	CCTNNNNNAGG	2 cut(s)	44, 839
BstF5I	GGATG	2 cut(s)	525, 1039
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	7 cut(s)	39, 66, 132, 360, 433, 879, 1063
BstMAI	GTCTC	2 cut(s)	292, 482
BstMBI	GATC	7 cut(s)	36, 63, 129, 357, 430, 876, 1060
BstMWI	GCNNNNNNNGC	4 cut(s)	276, 559, 816, 871
BstNI	CCWGG	3 cut(s)	83, 140, 580
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	3 cut(s)	81, 138, 578
BstV1I	GCAGC	1 cut(s)	257
BsuRI	GGCC	3 cut(s)	106, 236, 513
BtgI	CCRYGG	2 cut(s)	460, 1008
BtsCI	GGATG	2 cut(s)	525, 1039
BtsI	GCAGTG	1 cut(s)	935
BtsIMutI	CAGTG	1 cut(s)	935
BveI	ACCTGC	1 cut(s)	396
Cac8I	GCNNGC	5 cut(s)	265, 555, 736, 817, 999
CfoI	GCGC	1 cut(s)	449
Cfr13I	GGNCC	5 cut(s)	159, 169, 227, 668, 898
CsiI	ACCWGGT	1 cut(s)	578
Csp6I	GTAC	3 cut(s)	301, 679, 847
CspCI	CAANNNNNGTGG	2 cut(s)	535, 570
CviAII	CATG	4 cut(s)	509, 691, 745, 1009
CviQI	GTAC	3 cut(s)	301, 679, 847
DdeI	CTNAG	3 cut(s)	291, 948, 963
DpnI	GATC	7 cut(s)	38, 65, 131, 359, 432, 878, 1062
DpnII	GATC	7 cut(s)	36, 63, 129, 357, 430, 876, 1060
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	3 cut(s)	231, 609, 1008
Eco147I	AGGCCT	1 cut(s)	236
Eco24I	GRGCYC	2 cut(s)	120, 195
Eco31I	GGTCTC	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	467
Eco47I	GGWCC	5 cut(s)	159, 169, 227, 668, 898
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	62
Eco91I	GGTNACC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	2 cut(s)	44, 839
EcoO109I	RGGNCCY	2 cut(s)	169, 227
EcoO65I	GGTNACC	1 cut(s)	146
EcoRII	CCWGG	3 cut(s)	81, 138, 578
EcoRV	GATATC	1 cut(s)	467
EcoT14I	CCWWGG	3 cut(s)	231, 609, 1008
EcoT38I	GRGCYC	2 cut(s)	120, 195
ErhI	CCWWGG	3 cut(s)	231, 609, 1008
FaeI	CATG	4 cut(s)	512, 694, 748, 1012
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	3 cut(s)	155, 213, 476
FatI	CATG	4 cut(s)	508, 690, 744, 1008
FauNDI	CATATG	1 cut(s)	800
FbaI	TGATCA	2 cut(s)	129, 1060
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	268, 271
FokI	GGATG	2 cut(s)	512, 1046
FriOI	GRGCYC	2 cut(s)	120, 195
Fsp4HI	GCNGC	2 cut(s)	268, 271
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	2 cut(s)	268, 271
GsaI	CCCAGC	1 cut(s)	553
HaeIII	GGCC	3 cut(s)	106, 236, 513
HhaI	GCGC	1 cut(s)	449
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	4 cut(s)	512, 694, 748, 1012
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HincII	GTYRAC	2 cut(s)	19, 832
HindII	GTYRAC	2 cut(s)	19, 832
HindIII	AAGCTT	2 cut(s)	965, 1026
HinfI	GANTC	3 cut(s)	73, 257, 687
HpaI	GTTAAC	1 cut(s)	832
HphI	GGTGA	2 cut(s)	158, 707
Hpy166II	GTNNAC	3 cut(s)	19, 659, 832
Hpy188I	TCNGA	3 cut(s)	36, 129, 600
Hpy188III	TCNNGA	5 cut(s)	40, 61, 67, 566, 781
Hpy8I	GTNNAC	3 cut(s)	19, 659, 832
Hpy99I	CGWCG	4 cut(s)	23, 73, 157, 323
HpyAV	CCTTC	5 cut(s)	37, 259, 437, 742, 892
HpyCH4III	ACNGT	5 cut(s)	146, 218, 656, 922, 1068
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	5 cut(s)	243, 365, 593, 744, 915
HpyF10VI	GCNNNNNNNGC	4 cut(s)	276, 559, 816, 871
HpyF3I	CTNAG	3 cut(s)	291, 948, 963
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	512, 694, 748, 1012
HspAI	GCGC	1 cut(s)	447
KflI	GGGWCCC	1 cut(s)	227
Ksp22I	TGATCA	2 cut(s)	129, 1060
KspAI	GTTAAC	1 cut(s)	832
Kzo9I	GATC	7 cut(s)	36, 63, 129, 357, 430, 876, 1060
LguI	GCTCTTC	1 cut(s)	864
LmnI	GCTCC	3 cut(s)	8, 49, 547
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	3 cut(s)	529, 580, 994
MabI	ACCWGGT	1 cut(s)	578
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	146, 1012
MalI	GATC	7 cut(s)	38, 65, 131, 359, 432, 878, 1062
MboI	GATC	7 cut(s)	36, 63, 129, 357, 430, 876, 1060
MboII	GAAGA	5 cut(s)	103, 307, 726, 877, 881
MfeI	CAATTG	1 cut(s)	708
MhlI	GDGCHC	2 cut(s)	120, 195
MluCI	AATT	1 cut(s)	708
MlyI	GAGTC	2 cut(s)	251, 681
MnlI	CCTC	9 cut(s)	40, 96, 150, 247, 417, 478, 524, 573, 845
MseI	TTAA	3 cut(s)	831, 993, 1041
MspA1I	CMGCKG	2 cut(s)	270, 500
MspCI	CTTAAG	1 cut(s)	992
MspR9I	CCNGG	3 cut(s)	83, 140, 580
MunI	CAATTG	1 cut(s)	708
Mva1269I	GAATGC	2 cut(s)	647, 917
MvaI	CCWGG	3 cut(s)	83, 140, 580
MwoI	GCNNNNNNNGC	4 cut(s)	276, 559, 816, 871
NcoI	CCATGG	1 cut(s)	1008
NdeI	CATATG	1 cut(s)	800
NdeII	GATC	7 cut(s)	36, 63, 129, 357, 430, 876, 1060
NlaIII	CATG	4 cut(s)	512, 694, 748, 1012
NlaIV	GGNNCC	3 cut(s)	171, 228, 229
NmuCI	GTSAC	1 cut(s)	146
NspV	TTCGAA	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	864
PctI	GAATGC	2 cut(s)	647, 917
PfeI	GAWTC	1 cut(s)	73
PflFI	GACNNNGTC	1 cut(s)	455
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	269, 272
PleI	GAGTC	2 cut(s)	251, 681
PpsI	GAGTC	2 cut(s)	251, 681
PpuMI	RGGWCCY	2 cut(s)	169, 227
Psp124BI	GAGCTC	1 cut(s)	195
Psp5II	RGGWCCY	2 cut(s)	169, 227
Psp6I	CCWGG	3 cut(s)	81, 138, 578
PspEI	GGTNACC	1 cut(s)	146
PspFI	CCCAGC	1 cut(s)	549
PspGI	CCWGG	3 cut(s)	81, 138, 578
PspN4I	GGNNCC	3 cut(s)	171, 228, 229
PspPI	GGNCC	5 cut(s)	159, 169, 227, 668, 898
PspPPI	RGGWCCY	2 cut(s)	169, 227
PsyI	GACNNNGTC	1 cut(s)	455
RsaI	GTAC	3 cut(s)	302, 680, 848
RsaNI	GTAC	3 cut(s)	301, 679, 847
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	864
SaqAI	TTAA	3 cut(s)	831, 993, 1041
SatI	GCNGC	2 cut(s)	268, 271
Sau3AI	GATC	7 cut(s)	36, 63, 129, 357, 430, 876, 1060
Sau96I	GGNCC	5 cut(s)	159, 169, 227, 668, 898
SchI	GAGTC	2 cut(s)	251, 681
ScrFI	CCNGG	3 cut(s)	83, 140, 580
SduI	GDGCHC	2 cut(s)	120, 195
SexAI	ACCWGGT	1 cut(s)	578
SfaNI	GCATC	3 cut(s)	529, 580, 994
SfuI	TTCGAA	1 cut(s)	76
SinI	GGWCC	5 cut(s)	159, 169, 227, 668, 898
SmlI	CTYRAG	1 cut(s)	992
SmoI	CTYRAG	1 cut(s)	992
Sse9I	AATT	1 cut(s)	708
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	3 cut(s)	268, 498, 896
SspMI	CTAG	1 cut(s)	566
SstI	GAGCTC	1 cut(s)	195
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	3 cut(s)	81, 138, 578
StyI	CCWWGG	3 cut(s)	231, 609, 1008
TaaI	ACNGT	5 cut(s)	146, 218, 656, 922, 1068
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	8 cut(s)	18, 76, 114, 155, 183, 202, 369, 939
TasI	AATT	1 cut(s)	708
TatI	WGTACW	3 cut(s)	300, 678, 846
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	3 cut(s)	831, 993, 1041
Tru9I	TTAA	3 cut(s)	831, 993, 1041
TscAI	CASTG	1 cut(s)	935
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	270
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	653, 761
TspGWI	ACGGA	3 cut(s)	449, 470, 1059
TspRI	CASTG	1 cut(s)	935
Tth111I	GACNNNGTC	1 cut(s)	455
Vha464I	CTTAAG	1 cut(s)	992
VpaK11BI	GGWCC	5 cut(s)	159, 169, 227, 668, 898
XagI	CCTNNNNNAGG	2 cut(s)	44, 839
XbaI	TCTAGA	1 cut(s)	565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	770
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	1 cut(s)	566
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.