Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8378391.1

Orthogroup ID

OG0008993

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1037

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8378391.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 578 bp

atggcggagtacagcaaggtcgcgccgacgccgctgttgaaggatgagctggacatagtgatcccgacgatccgaaacctggacttcttggaaatgtggaggcccttcttccagcagtaccacctcatcatcgtccaggacggcgaccccagcaaggtcatcaaggtccccgagggcttcgactacgagctttacaaccgcaacgacattaaccggattctcggccccaaagccgcctgtatctccttcaaggactccgcctgccgctgcttcggctacatggtctccaagaagaagtacatcttcaccatcgacgacgattgcttcgttgctaaagatcccactggaaaagagatcaatgcactagagcagcacatcaagaaccttctgtgcccgtcgactccatttttctttaacaccctgtacgacccataccgtgaaggtgcagattttgtccgcggttaccctttcagtctgcgtgaaggtgtgccaaccgctgtttctcacggcctctggctcaacattcctgattatgatgcacctacccagcttgttaagcctcttgagaggaacaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

192

Amino Acids

22.11

Weight (kDa)

5.41

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08900
fragaria_vesca	FvH4_5g13530
malus_domestica	MD06G1203900.v1.1 MD14G1215200.v1.1 MD16G1059200.v1.1
prunus_persica	Prupe.1G289800_v2.0.a1 Prupe.5G208200_v2.0.a1
pyrus_communis	pycom06g18220 pycom14g17810
rosa_chinensis	RchiOBHm_Chr7g0183461 RchiOBHm_Chr7g0183481
rosa_laevigata	RLG00000005045
rosa_multiflora	Rmu_co8378391.1_g000001 Rmu_sc0000951.1_g000003
rosa_roxburghii	Rroxscaffold_3G00270440
rosa_rugosa	Rorug06G0458100
rosa_samantha	Rh7AG059000 Rh7BG059000 Rh7DG058800 Rh7DG059200 Rh7DG059300
rosa_wichuraiana	Rw7G004860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	398
AccII	CGCG	2 cut(s)	23, 459
AciI	CCGC	9 cut(s)	5, 32, 199, 234, 258, 265, 457, 459, 495
AclWI	GGATC	3 cut(s)	55, 64, 332
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	4 cut(s)	11, 119, 299, 425
AfiI	CCNNNNNNNGG	2 cut(s)	79, 154
AgsI	TTSAA	2 cut(s)	40, 250
AjnI	CCWGG	2 cut(s)	78, 135
AjuI	GAANNNNNNNTTGG	2 cut(s)	484, 516
AluBI	AGCT	3 cut(s)	49, 190, 550
AluI	AGCT	3 cut(s)	49, 190, 550
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	3 cut(s)	55, 64, 332
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	3 cut(s)	101, 223, 508
ApeKI	GCWGC	2 cut(s)	267, 370
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	3 cut(s)	102, 166, 224
AsuHPI	GGTGA	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	166
BaeGI	GKGCMC	1 cut(s)	395
BbvI	GCAGC	2 cut(s)	254, 382
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	2 cut(s)	157, 523
BciT130I	CCWGG	2 cut(s)	80, 137
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	1 cut(s)	365
BisI	GCNGC	5 cut(s)	32, 234, 265, 268, 371
BlsI	GCNGC	5 cut(s)	33, 235, 266, 269, 372
Bme1390I	CCNGG	2 cut(s)	80, 137
Bme18I	GGWCC	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	3 cut(s)	102, 166, 224
BmiI	GGNNCC	2 cut(s)	168, 226
BmrFI	CCNGG	2 cut(s)	80, 137
BmsI	GCATC	1 cut(s)	526
BsaHI	GRCGYC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	2 cut(s)	171, 457
BsaWI	WCCGGW	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 154
Bse1I	ACTGG	1 cut(s)	349
BseBI	CCWGG	2 cut(s)	80, 137
BseDI	CCNNGG	2 cut(s)	171, 457
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	2 cut(s)	79, 154
BseNI	ACTGG	1 cut(s)	349
BseSI	GKGCMC	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	254, 382
BseYI	CCCAGC	2 cut(s)	149, 546
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	2 cut(s)	23, 459
BshFI	GGCC	3 cut(s)	103, 225, 510
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	79, 154
BsmAI	GTCTC	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	3 cut(s)	103, 225, 510
Bso31I	GGTCTC	1 cut(s)	289
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	60, 69, 337, 354
BspACI	CCGC	9 cut(s)	5, 32, 199, 234, 258, 265, 457, 459, 495
BspANI	GGCC	3 cut(s)	103, 225, 510
BspFNI	CGCG	2 cut(s)	23, 459
BspLI	GGNNCC	2 cut(s)	168, 226
BspPI	GGATC	3 cut(s)	55, 64, 332
BspTNI	GGTCTC	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	171, 457
BssMI	GATC	4 cut(s)	60, 69, 337, 354
BssNI	GRCGYC	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	80, 137
Bst4CI	ACNGT	1 cut(s)	437
BstACI	GRCGYC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	262
BstDSI	CCRYGG	1 cut(s)	457
BstEII	GGTNACC	1 cut(s)	461
BstF5I	GGATG	1 cut(s)	49
BstFNI	CGCG	2 cut(s)	23, 459
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	4 cut(s)	63, 72, 340, 357
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	4 cut(s)	60, 69, 337, 354
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 150, 273, 556
BstNI	CCWGG	2 cut(s)	80, 137
BstPI	GGTNACC	1 cut(s)	461
BstSCI	CCNGG	2 cut(s)	78, 135
BstSLI	GKGCMC	1 cut(s)	395
BstUI	CGCG	2 cut(s)	23, 459
BstV1I	GCAGC	2 cut(s)	254, 382
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	3 cut(s)	103, 225, 510
BtgI	CCRYGG	1 cut(s)	457
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	262
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	3 cut(s)	102, 166, 224
Cfr42I	CCGCGG	1 cut(s)	460
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	4 cut(s)	10, 118, 298, 424
CviAII	CATG	1 cut(s)	280
CviQI	GTAC	4 cut(s)	10, 118, 298, 424
DpnI	GATC	4 cut(s)	62, 71, 339, 356
DpnII	GATC	4 cut(s)	60, 69, 337, 354
EciI	GGCGGA	2 cut(s)	20, 247
Eco31I	GGTCTC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	461
EcoO109I	RGGNCCY	2 cut(s)	102, 166
EcoO65I	GGTNACC	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	78, 135
FaeI	CATG	1 cut(s)	283
FaiI	YATR	4 cut(s)	56, 281, 433, 534
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	5 cut(s)	32, 234, 265, 268, 371
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	5 cut(s)	32, 234, 265, 268, 371
FspBI	CTAG	1 cut(s)	365
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	5 cut(s)	32, 234, 265, 268, 371
GsaI	CCCAGC	2 cut(s)	153, 550
HaeIII	GGCC	3 cut(s)	103, 225, 510
HapII	CCGG	1 cut(s)	214
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	3 cut(s)	217, 254, 400
HpaII	CCGG	1 cut(s)	214
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	4 cut(s)	64, 379, 527, 563
Hpy8I	GTNNAC	1 cut(s)	399
Hpy99I	CGWCG	5 cut(s)	31, 70, 317, 320, 400
HpyAV	CCTTC	6 cut(s)	34, 115, 256, 395, 434, 476
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4V	TGCA	3 cut(s)	362, 446, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 150, 273, 556
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	1 cut(s)	23
KspI	CCGCGG	1 cut(s)	460
Kzo9I	GATC	4 cut(s)	60, 69, 337, 354
Lsp1109I	GCAGC	2 cut(s)	254, 382
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	1 cut(s)	365
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	4 cut(s)	62, 71, 339, 356
MboI	GATC	4 cut(s)	60, 69, 337, 354
MboII	GAAGA	3 cut(s)	100, 295, 304
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	395
MlyI	GAGTC	2 cut(s)	248, 394
MnlI	CCTC	6 cut(s)	93, 134, 166, 521, 561, 570
MseI	TTAA	3 cut(s)	210, 414, 555
MspA1I	CMGCKG	4 cut(s)	34, 267, 459, 497
MspI	CCGG	1 cut(s)	214
MspR9I	CCNGG	2 cut(s)	80, 137
MvaI	CCWGG	2 cut(s)	80, 137
MvnI	CGCG	2 cut(s)	23, 459
MwoI	GCNNNNNNNGC	4 cut(s)	31, 150, 273, 556
NdeII	GATC	4 cut(s)	60, 69, 337, 354
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	2 cut(s)	168, 226
NmeAIII	GCCGAG	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	217
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	5 cut(s)	33, 235, 266, 269, 372
PleI	GAGTC	2 cut(s)	248, 394
PpsI	GAGTC	2 cut(s)	248, 394
PpuMI	RGGWCCY	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	2 cut(s)	78, 135
PspEI	GGTNACC	1 cut(s)	461
PspFI	CCCAGC	2 cut(s)	149, 546
PspGI	CCWGG	2 cut(s)	78, 135
PspN4I	GGNNCC	2 cut(s)	168, 226
PspPI	GGNCC	3 cut(s)	102, 166, 224
PspPPI	RGGWCCY	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	4 cut(s)	11, 119, 299, 425
RsaNI	GTAC	4 cut(s)	10, 118, 298, 424
SacII	CCGCGG	1 cut(s)	460
SalI	GTCGAC	1 cut(s)	397
SaqAI	TTAA	3 cut(s)	210, 414, 555
SatI	GCNGC	5 cut(s)	32, 234, 265, 268, 371
Sau3AI	GATC	4 cut(s)	60, 69, 337, 354
Sau96I	GGNCC	3 cut(s)	102, 166, 224
SchI	GAGTC	2 cut(s)	248, 394
ScrFI	CCNGG	2 cut(s)	80, 137
SduI	GDGCHC	1 cut(s)	395
SfaNI	GCATC	1 cut(s)	526
Sfr303I	CCGCGG	1 cut(s)	460
SgrBI	CCGCGG	1 cut(s)	460
SinI	GGWCC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
SsiI	CCGC	9 cut(s)	5, 32, 199, 234, 258, 265, 457, 459, 495
SspMI	CTAG	1 cut(s)	365
StyD4I	CCNGG	2 cut(s)	78, 135
TaaI	ACNGT	1 cut(s)	437
TaqI	TCGA	3 cut(s)	180, 312, 398
TatI	WGTACW	2 cut(s)	9, 297
TauI	GCSGC	3 cut(s)	34, 236, 267
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	3 cut(s)	210, 414, 555
Tru9I	TTAA	3 cut(s)	210, 414, 555
TscAI	CASTG	1 cut(s)	349
TseI	GCWGC	2 cut(s)	267, 370
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	398
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.