Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008993

Physical Location & Seq

Genomic Coordinates Forward (+)

16606205 .. 16608512

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G208200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCTGGAGTCAGTAAGGTTGCTCCCACACCTCTGCTCAAAGATGAGCTTGACATTGTTATTCCCACAATCCGAAACCTGGACTTCTTGGAGATGTGGAGGCCATTTTTTGAACAATACCACCTTATCATCGTCCAAGATGGTGACCCTTCAAAGGTCATCAAGGTCCCAGAGGGCTTTGACTACGAGCTCTACAACCGCAATGACATTAACCGCATCCTGGGTCCTAAGGCCTCTTGTATTTCCTTCAAGGACTCTGCTTGCCGCTGCTTCGGCTACATGGTCTCCAAGAAGAAGTACATCTTCACCATCGACGACGATTGCTTTGTTGCTAAAGATCCTTCTGGCAAAGATATCAATGCTCTTGAGCAGCATATTAAGAACCTTCTGACTCCATCAACTCCATTTTTCTTTAACACCTTGTATGACCCATACCGTGAAGGTGCAGACTTTGTCCGTGGTTACCCCTTCAGTCTACGTGAAGGTATCCCAACTGCTGTTTCTCATGGCCTTTGGCTCAACATTCCGGATTATGATGCACCCACTCAGCTTGTTAAGCCTCTAGAGAGAAACACTAGGTTTGTGGATGCAGTCCTGACCATTCCCAAGGGAACTCTCTTTCCCATGTGTGGTATGAATCTGGCATTCAACCGTGAATTGATTGGACCTGCTATGTACTTTGGACTCATGGGTGATGGTCAGCCAATCGGGCGTTACGATGATATGTGGGCTGGCTGGTGCATGAAGGTCATATGTGACCACTTGGGGCTGGGAGTGAAGACAGGATTGCCCTACATCTGGCATAGCAAAGCAAGCAATCCATTTGTGAACCTTAAGAAGGAATACAAAGGAATATACTGGCAAGAAGAGTTGATCCCATTCTTCCAATCTGCTACCCTTCCAAAAGACTGCACCACCGTTCAGAGCTGCTACATTGAGCTCTCCAAGCAAGTGAAGGCAAAGCTTGGCAAGGTTGATGACTACTTCCTCAAGCTTGCAGATGCCATGGTCACATGGGTTGAAGCATGGGACGAGTTGAACCCATCTGGAGAAAAATCTGTTGAGCAGAACGGAGTTGTTGCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

363

Amino Acids

41.11

Weight (kDa)

5.66

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08900
fragaria_vesca	FvH4_5g13530
malus_domestica	MD06G1203900.v1.1 MD14G1215200.v1.1 MD16G1059200.v1.1
prunus_persica	Prupe.1G289800_v2.0.a1 Prupe.5G208200_v2.0.a1
pyrus_communis	pycom06g18220 pycom14g17810
rosa_chinensis	RchiOBHm_Chr7g0183461 RchiOBHm_Chr7g0183481
rosa_laevigata	RLG00000005045
rosa_multiflora	Rmu_co8378391.1_g000001 Rmu_sc0000951.1_g000003
rosa_roxburghii	Rroxscaffold_3G00270440
rosa_rugosa	Rorug06G0458100
rosa_samantha	Rh7AG059000 Rh7BG059000 Rh7DG058800 Rh7DG059200 Rh7DG059300
rosa_wichuraiana	Rw7G004860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	676
AccI	GTMKAC	1 cut(s)	475
AccIII	TCCGGA	1 cut(s)	526
AciI	CCGC	3 cut(s)	199, 214, 265
AclWI	GGATC	2 cut(s)	332, 868
AcuI	CTGAAG	1 cut(s)	454
AfaI	GTAC	2 cut(s)	299, 677
AfiI	CCNNNNNNNGG	6 cut(s)	79, 154, 220, 629, 798, 838
AflII	CTTAAG	1 cut(s)	833
AgsI	TTSAA	6 cut(s)	113, 153, 250, 649, 1022, 1039
AjnI	CCWGG	2 cut(s)	78, 219
AjuI	GAANNNNNNNTTGG	2 cut(s)	484, 516
AloI	GAACNNNNNNTCC	2 cut(s)	604, 636
AluBI	AGCT	7 cut(s)	49, 190, 550, 927, 940, 964, 994
AluI	AGCT	7 cut(s)	49, 190, 550, 927, 940, 964, 994
Alw21I	GWGCWC	2 cut(s)	192, 942
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	2 cut(s)	332, 868
Aor13HI	TCCGGA	1 cut(s)	526
AoxI	GGCC	3 cut(s)	101, 231, 508
ApeKI	GCWGC	3 cut(s)	267, 370, 927
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AspS9I	GGNCC	3 cut(s)	166, 224, 665
AsuHPI	GGTGA	3 cut(s)	155, 298, 704
AvaII	GGWCC	3 cut(s)	166, 224, 665
AxyI	CCTNAGG	1 cut(s)	228
BanII	GRGCYC	2 cut(s)	192, 942
BbsI	GAAGAC	1 cut(s)	785
Bbv12I	GWGCWC	2 cut(s)	192, 942
BbvI	GCAGC	3 cut(s)	254, 382, 914
BccI	CCATC	5 cut(s)	134, 317, 403, 689, 1051
BciT130I	CCWGG	2 cut(s)	80, 221
BciVI	GTATCC	1 cut(s)	497
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	2 cut(s)	563, 576
BfrI	CTTAAG	1 cut(s)	833
BfuAI	ACCTGC	1 cut(s)	676
BfuI	GTATCC	1 cut(s)	497
BglI	GCCNNNNNGGC	1 cut(s)	709
BisI	GCNGC	4 cut(s)	265, 268, 371, 928
BlsI	GCNGC	4 cut(s)	266, 269, 372, 929
Bme1390I	CCNGG	2 cut(s)	80, 221
Bme18I	GGWCC	3 cut(s)	166, 224, 665
BmgT120I	GGNCC	3 cut(s)	166, 224, 665
BmiI	GGNNCC	2 cut(s)	168, 225
BmrFI	CCNGG	2 cut(s)	80, 221
BmsI	GCATC	4 cut(s)	225, 526, 577, 991
BpiI	GAAGAC	1 cut(s)	785
BpmI	CTGGAG	2 cut(s)	27, 1068
BpuEI	CTTGAG	2 cut(s)	386, 974
BsaAI	YACGTR	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	4 cut(s)	220, 457, 606, 1005
BsaWI	WCCGGW	1 cut(s)	526
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	6 cut(s)	79, 154, 220, 629, 798, 838
Bse1I	ACTGG	1 cut(s)	863
Bse21I	CCTNAGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	208
BseAI	TCCGGA	1 cut(s)	526
BseBI	CCWGG	2 cut(s)	80, 221
BseDI	CCNNGG	4 cut(s)	220, 457, 606, 1005
BseGI	GGATG	2 cut(s)	216, 592
BseLI	CCNNNNNNNGG	6 cut(s)	79, 154, 220, 629, 798, 838
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	560
BseNI	ACTGG	1 cut(s)	863
BseXI	GCAGC	3 cut(s)	254, 382, 914
BseYI	CCCAGC	1 cut(s)	769
BsgI	GTGCAG	2 cut(s)	465, 895
BshFI	GGCC	3 cut(s)	103, 233, 510
BsiHKAI	GWGCWC	2 cut(s)	192, 942
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	2 cut(s)	152, 1043
BslI	CCNNNNNNNGG	6 cut(s)	79, 154, 220, 629, 798, 838
BsmAI	GTCTC	1 cut(s)	289
BsmFI	GGGAC	2 cut(s)	152, 1043
BsmI	GAATGC	1 cut(s)	644
BsnI	GGCC	3 cut(s)	103, 233, 510
Bso31I	GGTCTC	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	192, 942
Bsp13I	TCCGGA	1 cut(s)	526
Bsp143I	GATC	2 cut(s)	337, 873
Bsp19I	CCATGG	1 cut(s)	1005
BspACI	CCGC	3 cut(s)	199, 214, 265
BspANI	GGCC	3 cut(s)	103, 233, 510
BspCNI	CTCAG	1 cut(s)	559
BspEI	TCCGGA	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	168, 225
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	2 cut(s)	332, 868
BspTI	CTTAAG	1 cut(s)	833
BspTNI	GGTCTC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	863
BssECI	CCNNGG	4 cut(s)	220, 457, 606, 1005
BssMI	GATC	2 cut(s)	337, 873
BssT1I	CCWWGG	2 cut(s)	606, 1005
Bst2UI	CCWGG	2 cut(s)	80, 221
Bst4CI	ACNGT	3 cut(s)	437, 653, 919
Bst6I	CTCTTC	1 cut(s)	861
BstAFI	CTTAAG	1 cut(s)	833
BstBAI	YACGTR	1 cut(s)	479
BstC8I	GCNNGC	4 cut(s)	262, 733, 814, 996
BstDEI	CTNAG	2 cut(s)	228, 546
BstDSI	CCRYGG	2 cut(s)	457, 1005
BstEII	GGTNACC	2 cut(s)	143, 461
BstENI	CCTNNNNNAGG	1 cut(s)	836
BstF5I	GGATG	2 cut(s)	216, 592
BstKTI	GATC	2 cut(s)	340, 876
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	2 cut(s)	337, 873
BstMWI	GCNNNNNNNGC	5 cut(s)	273, 556, 709, 813, 946
BstNI	CCWGG	2 cut(s)	80, 221
BstPI	GGTNACC	2 cut(s)	143, 461
BstSCI	CCNGG	2 cut(s)	78, 219
BstV1I	GCAGC	3 cut(s)	254, 382, 914
BstV2I	GAAGAC	1 cut(s)	785
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
Bsu36I	CCTNAGG	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	497
BsuRI	GGCC	3 cut(s)	103, 233, 510
BtgI	CCRYGG	2 cut(s)	457, 1005
BtsCI	GGATG	2 cut(s)	216, 592
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	4 cut(s)	262, 733, 814, 996
Cfr13I	GGNCC	3 cut(s)	166, 224, 665
Csp6I	GTAC	2 cut(s)	298, 676
CspCI	CAANNNNNGTGG	2 cut(s)	532, 567
CviAII	CATG	8 cut(s)	280, 506, 625, 688, 742, 1006, 1014, 1026
CviQI	GTAC	2 cut(s)	298, 676
DdeI	CTNAG	2 cut(s)	228, 546
DpnI	GATC	2 cut(s)	339, 875
DpnII	GATC	2 cut(s)	337, 873
Eam1104I	CTCTTC	1 cut(s)	861
EarI	CTCTTC	1 cut(s)	861
Ecl136II	GAGCTC	2 cut(s)	190, 940
Eco130I	CCWWGG	2 cut(s)	606, 1005
Eco147I	AGGCCT	1 cut(s)	233
Eco24I	GRGCYC	2 cut(s)	192, 942
Eco31I	GGTCTC	1 cut(s)	289
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	3 cut(s)	166, 224, 665
Eco53kI	GAGCTC	2 cut(s)	190, 940
Eco57I	CTGAAG	1 cut(s)	454
Eco81I	CCTNAGG	1 cut(s)	228
Eco91I	GGTNACC	2 cut(s)	143, 461
EcoICRI	GAGCTC	2 cut(s)	190, 940
EcoNI	CCTNNNNNAGG	1 cut(s)	836
EcoO109I	RGGNCCY	2 cut(s)	166, 224
EcoO65I	GGTNACC	2 cut(s)	143, 461
EcoRII	CCWGG	2 cut(s)	78, 219
EcoRV	GATATC	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	606, 1005
EcoT38I	GRGCYC	2 cut(s)	192, 942
ErhI	CCWWGG	2 cut(s)	606, 1005
FaeI	CATG	8 cut(s)	283, 509, 628, 691, 745, 1009, 1017, 1029
FalI	AAGNNNNNCTT	4 cut(s)	33, 65, 287, 319
FaqI	GGGAC	2 cut(s)	152, 1043
FatI	CATG	8 cut(s)	279, 505, 624, 687, 741, 1005, 1013, 1025
FauNDI	CATATG	1 cut(s)	752
FblI	GTMKAC	1 cut(s)	475
Fnu4HI	GCNGC	4 cut(s)	265, 268, 371, 928
FokI	GGATG	2 cut(s)	203, 599
FriOI	GRGCYC	2 cut(s)	192, 942
Fsp4HI	GCNGC	4 cut(s)	265, 268, 371, 928
FspBI	CTAG	2 cut(s)	563, 576
GluI	GCNGC	4 cut(s)	265, 268, 371, 928
GsaI	CCCAGC	1 cut(s)	773
GsuI	CTGGAG	2 cut(s)	27, 1068
HaeIII	GGCC	3 cut(s)	103, 233, 510
HapII	CCGG	1 cut(s)	527
Hin1II	CATG	8 cut(s)	283, 509, 628, 691, 745, 1009, 1017, 1029
HindIII	AAGCTT	2 cut(s)	962, 992
HinfI	GANTC	5 cut(s)	9, 254, 391, 637, 684
HpaII	CCGG	1 cut(s)	527
HphI	GGTGA	3 cut(s)	155, 298, 704
Hpy166II	GTNNAC	2 cut(s)	476, 829
Hpy188I	TCNGA	3 cut(s)	74, 390, 924
Hpy188III	TCNNGA	5 cut(s)	365, 527, 563, 595, 1047
Hpy8I	GTNNAC	2 cut(s)	476, 829
Hpy99I	CGWCG	2 cut(s)	317, 320
HpyCH4III	ACNGT	3 cut(s)	437, 653, 919
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	6 cut(s)	446, 539, 590, 741, 912, 998
HpyF10VI	GCNNNNNNNGC	5 cut(s)	273, 556, 709, 813, 946
HpyF3I	CTNAG	2 cut(s)	228, 546
HpySE526I	ACGT	1 cut(s)	478
Hsp92II	CATG	8 cut(s)	283, 509, 628, 691, 745, 1009, 1017, 1029
Kpn2I	TCCGGA	1 cut(s)	526
Kzo9I	GATC	2 cut(s)	337, 873
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	3 cut(s)	254, 382, 914
LweI	GCATC	4 cut(s)	225, 526, 577, 991
MaeI	CTAG	2 cut(s)	563, 576
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	5 cut(s)	143, 461, 713, 755, 1009
MalI	GATC	2 cut(s)	339, 875
MboI	GATC	2 cut(s)	337, 873
MboII	GAAGA	5 cut(s)	295, 304, 790, 874, 878
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	2 cut(s)	192, 942
MluCI	AATT	1 cut(s)	656
MlyI	GAGTC	4 cut(s)	18, 248, 385, 678
MnlI	CCTC	6 cut(s)	42, 93, 166, 244, 570, 998
MroI	TCCGGA	1 cut(s)	526
MseI	TTAA	5 cut(s)	210, 378, 414, 555, 834
MspA1I	CMGCKG	1 cut(s)	267
MspCI	CTTAAG	1 cut(s)	833
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	2 cut(s)	80, 221
Mva1269I	GAATGC	1 cut(s)	644
MvaI	CCWGG	2 cut(s)	80, 221
MwoI	GCNNNNNNNGC	5 cut(s)	273, 556, 709, 813, 946
NcoI	CCATGG	1 cut(s)	1005
NdeI	CATATG	1 cut(s)	752
NdeII	GATC	2 cut(s)	337, 873
NlaIII	CATG	8 cut(s)	283, 509, 628, 691, 745, 1009, 1017, 1029
NlaIV	GGNNCC	2 cut(s)	168, 225
NmuCI	GTSAC	3 cut(s)	143, 755, 1009
PceI	AGGCCT	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	714
PctI	GAATGC	1 cut(s)	644
PfeI	GAWTC	1 cut(s)	637
PflFI	GACNNNGTC	1 cut(s)	452
PkrI	GCNGC	4 cut(s)	266, 269, 372, 929
PleI	GAGTC	4 cut(s)	17, 248, 385, 678
PpsI	GAGTC	4 cut(s)	17, 248, 385, 678
Ppu21I	YACGTR	1 cut(s)	479
PpuMI	RGGWCCY	2 cut(s)	166, 224
Psp124BI	GAGCTC	2 cut(s)	192, 942
Psp5II	RGGWCCY	2 cut(s)	166, 224
Psp6I	CCWGG	2 cut(s)	78, 219
PspEI	GGTNACC	2 cut(s)	143, 461
PspFI	CCCAGC	1 cut(s)	769
PspGI	CCWGG	2 cut(s)	78, 219
PspN4I	GGNNCC	2 cut(s)	168, 225
PspPI	GGNCC	3 cut(s)	166, 224, 665
PspPPI	RGGWCCY	2 cut(s)	166, 224
PsuI	RGATCY	1 cut(s)	337
PsyI	GACNNNGTC	1 cut(s)	452
RsaI	GTAC	2 cut(s)	299, 677
RsaNI	GTAC	2 cut(s)	298, 676
SacI	GAGCTC	2 cut(s)	192, 942
SaqAI	TTAA	5 cut(s)	210, 378, 414, 555, 834
SatI	GCNGC	4 cut(s)	265, 268, 371, 928
Sau3AI	GATC	2 cut(s)	337, 873
Sau96I	GGNCC	3 cut(s)	166, 224, 665
SchI	GAGTC	4 cut(s)	18, 248, 385, 678
ScrFI	CCNGG	2 cut(s)	80, 221
SduI	GDGCHC	2 cut(s)	192, 942
SfaNI	GCATC	4 cut(s)	225, 526, 577, 991
SinI	GGWCC	3 cut(s)	166, 224, 665
SmlI	CTYRAG	3 cut(s)	365, 833, 989
SmoI	CTYRAG	3 cut(s)	365, 833, 989
Sse9I	AATT	1 cut(s)	656
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	3 cut(s)	199, 214, 265
SspMI	CTAG	2 cut(s)	563, 576
SstI	GAGCTC	2 cut(s)	192, 942
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	2 cut(s)	78, 219
StyI	CCWWGG	2 cut(s)	606, 1005
TaaI	ACNGT	3 cut(s)	437, 653, 919
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	656
TatI	WGTACW	2 cut(s)	297, 675
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	637
Tru1I	TTAA	5 cut(s)	210, 378, 414, 555, 834
Tru9I	TTAA	5 cut(s)	210, 378, 414, 555, 834
TseFI	GTSAC	3 cut(s)	143, 755, 1009
TseI	GCWGC	3 cut(s)	267, 370, 927
Tsp45I	GTSAC	3 cut(s)	143, 755, 1009
TspDTI	ATGAA	2 cut(s)	650, 758
TspGWI	ACGGA	2 cut(s)	446, 1086
Tth111I	GACNNNGTC	1 cut(s)	452
Vha464I	CTTAAG	1 cut(s)	833
VpaK11BI	GGWCC	3 cut(s)	166, 224, 665
XagI	CCTNNNNNAGG	1 cut(s)	836
XbaI	TCTAGA	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	475
XspI	CTAG	2 cut(s)	563, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.