Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008993

Physical Location & Seq

Genomic Coordinates Reverse (-)

63006600 .. 63008828

Gene Structure 2229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCGGAGTACAGCAAGGTGGCGCCGACGCCGCTGCTGAAGGATGAGCTGGACATAGTGATCCCGACGATCCGAAACCTGGACTTCTTGGAAATGTGGAGGCCCTTCTTCGAGCAGTACCACCTGATCATCGTCCAGGACGGCGACCCCAGCAAGGTCATCAAGGTCCCCGAGGGCTTCGACTACGAGCTTTACAACCGTAACGACATTAACCGGATTCTCGGCCCCAAAGCCGCCTGTATCTCCTTCAAAGACTCCGCCTGCCGCTGCTTCGGCTACATGGTCTCCAAGAAGAAGTACATCTTCACCATCGACGACGATTGCTTCGTTGCTAAAGATCCCACTGGAAAACAGATCAATGCACTAGAGCAGCACATCAAGAACCTTCTTCTGCGTGAAGGTGTGCCAACCGCTGTTTCTCACGGCCTCTGGCTCAACATTCCTGATTATGATGCACCTACCCAGCTTGTTAAGCCTCTTGAGAGGAACACCAGGTTTGTGGATGCAGTCTTGACCATCCCCAAGGGAACTCTCTTTCCCATGTGTGGGATGAATCTGGCATTCAACCGTGAGTTGATCGGCCCTGCTATGTACTTTGGACTCATGGGCGATGGTCAGCCAATTGGGCGCTACGACGATATGTGGGCTGGATGGTGCATGAAGGTTATTTGTGACCACTTGGGGCTAGGAGTGAAGACGGGACTGCCCTACATCTGGCATAGCAAAGCCAGCAACCCATTTGTTAACCTTAAGAAGGAATACAAAGGAATCTACTGGCAGGAAGAGTTGATCCCATTTTTCCAATCTGCTACGCTTCCCAAGGATTGCACCACTGTTCAGGCCTGCTACCTTGAACTCTCCAAGCAAGTCAAGGCGAAACTCGGTAAGGTTGATGACTACTTCAACAAGCTTGCAGATGCCATGGTTACATGGATTGAAGCATGGGATGAGTTGAACCCAGCTGGGGGGAAAAGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

326

Amino Acids

37.06

Weight (kDa)

6.01

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RGP	PF03214	13 - 130	2.3e-54	Reversibly glycosylated polypeptide
RGP	PF03214	131 - 319	3e-93	Reversibly glycosylated polypeptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08900
fragaria_vesca	FvH4_5g13530
malus_domestica	MD06G1203900.v1.1 MD14G1215200.v1.1 MD16G1059200.v1.1
prunus_persica	Prupe.1G289800_v2.0.a1 Prupe.5G208200_v2.0.a1
pyrus_communis	pycom06g18220 pycom14g17810
rosa_chinensis	RchiOBHm_Chr7g0183461 RchiOBHm_Chr7g0183481
rosa_laevigata	RLG00000005045
rosa_multiflora	Rmu_co8378391.1_g000001 Rmu_sc0000951.1_g000003
rosa_roxburghii	Rroxscaffold_3G00270440
rosa_rugosa	Rorug06G0458100
rosa_samantha	Rh7AG059000 Rh7BG059000 Rh7DG058800 Rh7DG059200 Rh7DG059300
rosa_wichuraiana	Rw7G004860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AciI	CCGC	6 cut(s)	5, 32, 234, 258, 265, 411
AclWI	GGATC	4 cut(s)	55, 64, 332, 784
AcuI	CTGAAG	1 cut(s)	59
AcyI	GRCGYC	2 cut(s)	23, 29
AfaI	GTAC	4 cut(s)	11, 119, 299, 593
AfiI	CCNNNNNNNGG	8 cut(s)	79, 154, 545, 546, 714, 754, 964, 965
AflII	CTTAAG	1 cut(s)	749
AgsI	TTSAA	6 cut(s)	250, 565, 854, 904, 938, 955
AjnI	CCWGG	3 cut(s)	78, 135, 491
AjuI	GAANNNNNNNTTGG	2 cut(s)	400, 432
AloI	GAACNNNNNNTCC	2 cut(s)	520, 552
AluBI	AGCT	6 cut(s)	49, 190, 466, 910, 962, 975
AluI	AGCT	6 cut(s)	49, 190, 466, 910, 962, 975
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	4 cut(s)	55, 64, 332, 784
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	5 cut(s)	101, 223, 424, 580, 840
ApeKI	GCWGC	3 cut(s)	34, 267, 370
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AspLEI	GCGC	2 cut(s)	25, 630
AspS9I	GGNCC	4 cut(s)	102, 166, 224, 581
AsuHPI	GGTGA	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	701
BbvI	GCAGC	3 cut(s)	21, 254, 382
BccI	CCATC	4 cut(s)	317, 524, 605, 645
BceAI	ACGGC	2 cut(s)	157, 439
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	3 cut(s)	80, 137, 493
BclI	TGATCA	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	2 cut(s)	365, 686
BfoI	RGCGCY	2 cut(s)	26, 631
BfrI	CTTAAG	1 cut(s)	749
BglI	GCCNNNNNGGC	1 cut(s)	625
BisI	GCNGC	6 cut(s)	32, 35, 234, 265, 268, 371
BlsI	GCNGC	6 cut(s)	33, 36, 235, 266, 269, 372
Bme1390I	CCNGG	3 cut(s)	80, 137, 493
Bme18I	GGWCC	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	4 cut(s)	102, 166, 224, 581
BmiI	GGNNCC	3 cut(s)	24, 168, 226
BmrFI	CCNGG	3 cut(s)	80, 137, 493
BmsI	GCATC	3 cut(s)	442, 493, 907
BpiI	GAAGAC	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	500
BsaHI	GRCGYC	2 cut(s)	23, 29
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	4 cut(s)	171, 522, 819, 921
BsaWI	WCCGGW	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	8 cut(s)	79, 154, 545, 546, 714, 754, 964, 965
Bse1I	ACTGG	2 cut(s)	349, 779
BseBI	CCWGG	3 cut(s)	80, 137, 493
BseDI	CCNNGG	4 cut(s)	171, 522, 819, 921
BseGI	GGATG	6 cut(s)	49, 508, 516, 555, 656, 952
BseLI	CCNNNNNNNGG	8 cut(s)	79, 154, 545, 546, 714, 754, 964, 965
BseNI	ACTGG	2 cut(s)	349, 779
BseXI	GCAGC	3 cut(s)	21, 254, 382
BseYI	CCCAGC	4 cut(s)	149, 462, 958, 962
BshFI	GGCC	5 cut(s)	103, 225, 426, 582, 842
BshNI	GGYRCC	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	214
BslFI	GGGAC	2 cut(s)	152, 714
BslI	CCNNNNNNNGG	8 cut(s)	79, 154, 545, 546, 714, 754, 964, 965
BsmAI	GTCTC	1 cut(s)	289
BsmFI	GGGAC	2 cut(s)	152, 714
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	5 cut(s)	103, 225, 426, 582, 842
Bso31I	GGTCTC	1 cut(s)	289
BsoBI	CYCGRG	1 cut(s)	170
Bsp143I	GATC	7 cut(s)	60, 69, 126, 337, 354, 576, 789
Bsp19I	CCATGG	1 cut(s)	921
BspACI	CCGC	6 cut(s)	5, 32, 234, 258, 265, 411
BspANI	GGCC	5 cut(s)	103, 225, 426, 582, 842
BspLI	GGNNCC	3 cut(s)	24, 168, 226
BspPI	GGATC	4 cut(s)	55, 64, 332, 784
BspT107I	GGYRCC	1 cut(s)	22
BspTI	CTTAAG	1 cut(s)	749
BspTNI	GGTCTC	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	349, 779
BssECI	CCNNGG	4 cut(s)	171, 522, 819, 921
BssMI	GATC	7 cut(s)	60, 69, 126, 337, 354, 576, 789
BssNI	GRCGYC	2 cut(s)	23, 29
BssT1I	CCWWGG	3 cut(s)	522, 819, 921
Bst2UI	CCWGG	3 cut(s)	80, 137, 493
Bst4CI	ACNGT	3 cut(s)	200, 569, 835
Bst6I	CTCTTC	1 cut(s)	777
BstACI	GRCGYC	2 cut(s)	23, 29
BstAFI	CTTAAG	1 cut(s)	749
BstC8I	GCNNGC	4 cut(s)	262, 730, 844, 912
BstDSI	CCRYGG	1 cut(s)	921
BstENI	CCTNNNNNAGG	1 cut(s)	752
BstF5I	GGATG	6 cut(s)	49, 508, 516, 555, 656, 952
BstH2I	RGCGCY	2 cut(s)	26, 631
BstHHI	GCGC	2 cut(s)	25, 630
BstKTI	GATC	7 cut(s)	63, 72, 129, 340, 357, 579, 792
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	7 cut(s)	60, 69, 126, 337, 354, 576, 789
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 150, 273, 472, 625, 729
BstNI	CCWGG	3 cut(s)	80, 137, 493
BstSCI	CCNGG	3 cut(s)	78, 135, 491
BstV1I	GCAGC	3 cut(s)	21, 254, 382
BstV2I	GAAGAC	1 cut(s)	701
BstX2I	RGATCY	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	5 cut(s)	103, 225, 426, 582, 842
BtgI	CCRYGG	1 cut(s)	921
BtgZI	GCGATG	1 cut(s)	624
BtsCI	GGATG	6 cut(s)	49, 508, 516, 555, 656, 952
BtsIMutI	CAGTG	2 cut(s)	342, 831
Cac8I	GCNNGC	4 cut(s)	262, 730, 844, 912
CfoI	GCGC	2 cut(s)	25, 630
Cfr13I	GGNCC	4 cut(s)	102, 166, 224, 581
CseI	GACGC	1 cut(s)	37
CsiI	ACCWGGT	1 cut(s)	491
Csp6I	GTAC	4 cut(s)	10, 118, 298, 592
CviAII	CATG	7 cut(s)	280, 541, 604, 658, 922, 930, 942
CviQI	GTAC	4 cut(s)	10, 118, 298, 592
DinI	GGCGCC	1 cut(s)	24
DpnI	GATC	7 cut(s)	62, 71, 128, 339, 356, 578, 791
DpnII	GATC	7 cut(s)	60, 69, 126, 337, 354, 576, 789
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
EciI	GGCGGA	2 cut(s)	20, 247
Eco130I	CCWWGG	3 cut(s)	522, 819, 921
Eco147I	AGGCCT	1 cut(s)	842
Eco31I	GGTCTC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	752
EcoO109I	RGGNCCY	2 cut(s)	102, 166
EcoRII	CCWGG	3 cut(s)	78, 135, 491
EcoT14I	CCWWGG	3 cut(s)	522, 819, 921
EgeI	GGCGCC	1 cut(s)	24
EheI	GGCGCC	1 cut(s)	24
ErhI	CCWWGG	3 cut(s)	522, 819, 921
FaeI	CATG	7 cut(s)	283, 544, 607, 661, 925, 933, 945
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	2 cut(s)	152, 714
FatI	CATG	7 cut(s)	279, 540, 603, 657, 921, 929, 941
FbaI	TGATCA	1 cut(s)	126
Fnu4HI	GCNGC	6 cut(s)	32, 35, 234, 265, 268, 371
FokI	GGATG	6 cut(s)	56, 503, 515, 562, 663, 959
Fsp4HI	GCNGC	6 cut(s)	32, 35, 234, 265, 268, 371
FspBI	CTAG	2 cut(s)	365, 686
GlaI	GCGC	2 cut(s)	24, 629
GluI	GCNGC	6 cut(s)	32, 35, 234, 265, 268, 371
GsaI	CCCAGC	4 cut(s)	153, 466, 962, 966
HaeII	RGCGCY	2 cut(s)	26, 631
HaeIII	GGCC	5 cut(s)	103, 225, 426, 582, 842
HapII	CCGG	1 cut(s)	214
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	2 cut(s)	25, 630
Hin1I	GRCGYC	2 cut(s)	23, 29
Hin1II	CATG	7 cut(s)	283, 544, 607, 661, 925, 933, 945
Hin6I	GCGC	2 cut(s)	23, 628
HinP1I	GCGC	2 cut(s)	23, 628
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	1 cut(s)	908
HinfI	GANTC	5 cut(s)	217, 254, 553, 600, 768
HpaI	GTTAAC	1 cut(s)	745
HpaII	CCGG	1 cut(s)	214
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	5 cut(s)	64, 379, 443, 479, 511
Hpy8I	GTNNAC	1 cut(s)	745
Hpy99I	CGWCG	5 cut(s)	31, 70, 317, 320, 638
HpyAV	CCTTC	7 cut(s)	34, 115, 256, 392, 395, 655, 748
HpyCH4III	ACNGT	3 cut(s)	200, 569, 835
HpyCH4V	TGCA	6 cut(s)	362, 455, 506, 657, 828, 914
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 150, 273, 472, 625, 729
Hsp92I	GRCGYC	2 cut(s)	23, 29
Hsp92II	CATG	7 cut(s)	283, 544, 607, 661, 925, 933, 945
HspAI	GCGC	2 cut(s)	23, 628
KasI	GGCGCC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	126
KspAI	GTTAAC	1 cut(s)	745
Kzo9I	GATC	7 cut(s)	60, 69, 126, 337, 354, 576, 789
Lsp1109I	GCAGC	3 cut(s)	21, 254, 382
LweI	GCATC	3 cut(s)	442, 493, 907
MabI	ACCWGGT	1 cut(s)	491
MaeI	CTAG	2 cut(s)	365, 686
MaeIII	GTNAC	3 cut(s)	200, 671, 925
MalI	GATC	7 cut(s)	62, 71, 128, 339, 356, 578, 791
MboI	GATC	7 cut(s)	60, 69, 126, 337, 354, 576, 789
MboII	GAAGA	6 cut(s)	100, 295, 304, 380, 706, 794
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	1 cut(s)	621
Mly113I	GGCGCC	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	248, 594
MnlI	CCTC	5 cut(s)	93, 166, 437, 477, 486
MseI	TTAA	4 cut(s)	210, 471, 744, 750
MspA1I	CMGCKG	4 cut(s)	34, 267, 413, 962
MspCI	CTTAAG	1 cut(s)	749
MspI	CCGG	1 cut(s)	214
MspR9I	CCNGG	3 cut(s)	80, 137, 493
MunI	CAATTG	1 cut(s)	621
Mva1269I	GAATGC	1 cut(s)	560
MvaI	CCWGG	3 cut(s)	80, 137, 493
MwoI	GCNNNNNNNGC	6 cut(s)	31, 150, 273, 472, 625, 729
NarI	GGCGCC	1 cut(s)	23
NcoI	CCATGG	1 cut(s)	921
NdeII	GATC	7 cut(s)	60, 69, 126, 337, 354, 576, 789
NlaIII	CATG	7 cut(s)	283, 544, 607, 661, 925, 933, 945
NlaIV	GGNNCC	3 cut(s)	24, 168, 226
NmeAIII	GCCGAG	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	671
PceI	AGGCCT	1 cut(s)	842
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PctI	GAATGC	1 cut(s)	560
PfeI	GAWTC	3 cut(s)	217, 553, 768
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	6 cut(s)	33, 36, 235, 266, 269, 372
PleI	GAGTC	2 cut(s)	248, 594
PluTI	GGCGCC	1 cut(s)	26
PpsI	GAGTC	2 cut(s)	248, 594
PpuMI	RGGWCCY	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	3 cut(s)	78, 135, 491
PspFI	CCCAGC	4 cut(s)	149, 462, 958, 962
PspGI	CCWGG	3 cut(s)	78, 135, 491
PspN4I	GGNNCC	3 cut(s)	24, 168, 226
PspPI	GGNCC	4 cut(s)	102, 166, 224, 581
PspPPI	RGGWCCY	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	962
RsaI	GTAC	4 cut(s)	11, 119, 299, 593
RsaNI	GTAC	4 cut(s)	10, 118, 298, 592
SaqAI	TTAA	4 cut(s)	210, 471, 744, 750
SatI	GCNGC	6 cut(s)	32, 35, 234, 265, 268, 371
Sau3AI	GATC	7 cut(s)	60, 69, 126, 337, 354, 576, 789
Sau96I	GGNCC	4 cut(s)	102, 166, 224, 581
SchI	GAGTC	2 cut(s)	248, 594
ScrFI	CCNGG	3 cut(s)	80, 137, 493
SexAI	ACCWGGT	1 cut(s)	491
SfaNI	GCATC	3 cut(s)	442, 493, 907
SfoI	GGCGCC	1 cut(s)	24
SinI	GGWCC	1 cut(s)	166
SmlI	CTYRAG	2 cut(s)	479, 749
SmoI	CTYRAG	2 cut(s)	479, 749
Sse9I	AATT	1 cut(s)	621
SseBI	AGGCCT	1 cut(s)	842
SsiI	CCGC	6 cut(s)	5, 32, 234, 258, 265, 411
SspDI	GGCGCC	1 cut(s)	22
SspMI	CTAG	2 cut(s)	365, 686
StuI	AGGCCT	1 cut(s)	842
StyD4I	CCNGG	3 cut(s)	78, 135, 491
StyI	CCWWGG	3 cut(s)	522, 819, 921
TaaI	ACNGT	3 cut(s)	200, 569, 835
TaqI	TCGA	3 cut(s)	111, 180, 312
TasI	AATT	1 cut(s)	621
TatI	WGTACW	3 cut(s)	9, 297, 591
TauI	GCSGC	3 cut(s)	34, 236, 267
TfiI	GAWTC	3 cut(s)	217, 553, 768
Tru1I	TTAA	4 cut(s)	210, 471, 744, 750
Tru9I	TTAA	4 cut(s)	210, 471, 744, 750
TscAI	CASTG	2 cut(s)	349, 838
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	3 cut(s)	34, 267, 370
Tsp45I	GTSAC	1 cut(s)	671
TspDTI	ATGAA	2 cut(s)	566, 674
TspRI	CASTG	2 cut(s)	349, 838
Vha464I	CTTAAG	1 cut(s)	749
VpaK11BI	GGWCC	1 cut(s)	166
XagI	CCTNNNNNAGG	1 cut(s)	752
XspI	CTAG	2 cut(s)	365, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.