Prupe.1G290200_v2.0.a1

Squamosa promoter-binding-like protein 6

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
28899647 .. 28904912
5266 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G290200.1

Sequence Viewer

Length: 1602 bp
ATGTTGACTCTCAGTCACAGTGTATCTGCTTCGACCTCACCAAAACCTGAAAATAAAATACTCCCTCTCTCTCTCTCTCCGTGTCTCTGTCTCTCTCACTCACTCCGTGCCTTCATTGTTTCGTCTGAAGGGAAAGGATTTTTATTCCCCGAAGAAATAGATATACAAATTGATGCGTTTGCAAGGAGTAGAAAAGCATTGCTAGAATGGGATAACAAAACTTGCTTGAATTTCGGTAAAGAATCAGTTGACGGCACGGAGTTCATGGAATTGGATCTCCCTGACATAGTGAGGAAGCCTTTTCATACAAACCAAGGAGTGGAAATCTTGAGTGGTGTGGTTGGTAATGATTCTAGTTATAATTCTGTAGCTTCTCCTACTTGTTTGATTTCTTCAAGTTCATCTTTGGGTGAAGGAGAATCTGGATCAAAGTTTTCGAGCCCGGTCACTGAATCTAATAGCCAGGATTCATCACTCATTGCTTTGAAGCTAGGGAGGTTGACTGATAGCAAAAATGGGCAGAATGGTCAACATGCTAAAGAGAGGTCTAAAAGAGGTGGCATTAAGGGTTCATACTCTCACATTCCCACCTGCCAAGTCCTTGGTTGTAACATGGATCTTAGCTCCTCAAAGGATTACCACAAGAGGCATAGAGTTTGTGATGCTCACTCCAAGACTCCCATAGTGATTGTTAATGGCATGGAACAGAGGTTTTGTCAGCAGTGTAGCAGGTTTCATCTGCTTGCTGAATTTGACGATGTTAAGCGCAGTTGTCGTAGACGCCTAGCTGGCCACAATGAACGCCGAAGGAAGCCTCAACTAGATACCCTCAATTGTAAACCGCATAAGTTGCTTCGGTCATATCAAGGCACTGGTTATGTAGGAACTTCCTTTGCAAAGAGAACACCCTTTGTCTTTTCAGATATTCTTCCAGGTGGCATTCTATATCCAGAAGAATATGCACATGCTAACCAGTATGGAAATGTCAAATGTGAAGATGAGTCAACTTACAGTCAATGTGTAACACCTATAGCAAACAGGCAAATGCTTCCGAAATCTGTCCTTGGGAAACAACATGCTCCAGGAATTCCTTCATCAGGAAATGAATACTCTACTTTTGATGCAGCATCAACCATTCAGAAAGCATCTGGGTCCTCAAACTCCTGTTGTGCTCTCTCTCTTCTGTCAACTCAATCGCATAACTTATCAGGGCATTCAGCAGGAGTTCAGGTTCCTAGCCCCTCGATAATACAACAAAGTACTCATCACAGTGTTGGTCAACTTTATGAAAAGCCTTCAAGAGTAAACTCCATGGAAAAATGTGGACAAAGCGGGTCCTACCTACATATTATGAACTCCATGGGAGTTGACCAGATGGAATCAGTAATAGATTCTAGTCAGGCTGTTGACTTCCAACTTCACACAGATGGGGGTTTTCAAGAGTCACATTGTTTAAGTACCAAGTATTGTCTTTCTCCCGAACATGGAACAACTTTTGATTTGCTGCAATTGTCATCACATCTTCAAAGAGTGGAGCATGAGAGAAACTTTTTGCAAGTAAAACAGGAGCATGGAGAATACTACTGTTTCCCAACTGCTTAA

Protein Analysis

534

Amino Acids

58.58

Weight (kDa)

7.31

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
AarI CACCTGC 1 cut(s) 599
Acc36I ACCTGC 2 cut(s) 599, 720
AccB7I CCANNNNNTGG 1 cut(s) 319
AccI GTMKAC 1 cut(s) 778
AciI CCGC 2 cut(s) 842, 1332
AclWI GGATC 3 cut(s) 282, 433, 624
AcoI YGGCCR 1 cut(s) 790
AcsI RAATTY 3 cut(s) 229, 749, 1086
AcuI CTGAAG 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 781
AdeI CACNNNGTG 1 cut(s) 107
AfaI GTAC 2 cut(s) 1261, 1459
AfiI CCNNNNNNNGG 3 cut(s) 319, 1097, 1484
AgsI TTSAA 6 cut(s) 229, 396, 487, 1299, 1439, 1526
AhdI GACNNNNNGTC 1 cut(s) 12
AjnI CCWGG 3 cut(s) 462, 931, 1081
AloI GAACNNNNNNTCC 2 cut(s) 1215, 1247
AluBI AGCT 4 cut(s) 371, 490, 624, 788
AluI AGCT 4 cut(s) 371, 490, 624, 788
Alw21I GWGCWC 1 cut(s) 1174
Alw26I GTCTC 2 cut(s) 89, 95
AlwI GGATC 3 cut(s) 282, 433, 624
AoxI GGCC 1 cut(s) 790
ApeKI GCWGC 2 cut(s) 1124, 1504
ApoI RAATTY 3 cut(s) 229, 749, 1086
Asp700I GAANNNNTTC 1 cut(s) 1090
AspLEI GCGC 1 cut(s) 768
AspS9I GGNCC 2 cut(s) 1152, 1335
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 2 cut(s) 30, 422
AvaII GGWCC 2 cut(s) 1152, 1335
BalI TGGCCA 1 cut(s) 792
BanII GRGCYC 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 1174
BbvI GCAGC 2 cut(s) 1136, 1491
BccI CCATC 2 cut(s) 1369, 1421
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 3 cut(s) 464, 933, 1083
BcnI CCSGG 1 cut(s) 443
BcoDI GTCTC 2 cut(s) 89, 95
BfaI CTAG 7 cut(s) 203, 354, 491, 785, 821, 1236, 1395
BfmI CTRYAG 2 cut(s) 366, 1029
BfuAI ACCTGC 2 cut(s) 599, 720
BglI GCCNNNNNGGC 1 cut(s) 789
BisI GCNGC 2 cut(s) 1125, 1505
BlsI GCNGC 2 cut(s) 1126, 1506
BmcAI AGTACT 1 cut(s) 1261
Bme1390I CCNGG 4 cut(s) 443, 464, 933, 1083
Bme18I GGWCC 2 cut(s) 1152, 1335
BmeRI GACNNNNNGTC 1 cut(s) 12
BmgT120I GGNCC 2 cut(s) 1152, 1335
BmiI GGNNCC 3 cut(s) 1153, 1233, 1336
BmrFI CCNGG 4 cut(s) 443, 464, 933, 1083
BmsI GCATC 5 cut(s) 163, 652, 1111, 1136, 1154
BpmI CTGGAG 1 cut(s) 1065
BpuEI CTTGAG 1 cut(s) 349
BpuMI CCSGG 1 cut(s) 443
BsaHI GRCGYC 1 cut(s) 781
BsaJI CCNNGG 5 cut(s) 313, 601, 1063, 1311, 1359
BsaXI ACNNNNNCTCC 2 cut(s) 1215, 1245
Bsc4I CCNNNNNNNGG 3 cut(s) 319, 1097, 1484
Bse1I ACTGG 2 cut(s) 877, 973
Bse3DI GCAATG 2 cut(s) 197, 477
BseBI CCWGG 3 cut(s) 464, 933, 1083
BseDI CCNNGG 5 cut(s) 313, 601, 1063, 1311, 1359
BseLI CCNNNNNNNGG 3 cut(s) 319, 1097, 1484
BseMI GCAATG 2 cut(s) 197, 477
BseMII CTCAG 1 cut(s) 25
BseNI ACTGG 2 cut(s) 877, 973
BseRI GAGGAG 1 cut(s) 616
BseXI GCAGC 2 cut(s) 1136, 1491
BshFI GGCC 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 1174
BsiSI CCGG 1 cut(s) 443
BslI CCNNNNNNNGG 3 cut(s) 319, 1097, 1484
BsmAI GTCTC 2 cut(s) 89, 95
BsmI GAATGC 2 cut(s) 939, 1213
BsnI GGCC 1 cut(s) 792
Bsp1286I GDGCHC 2 cut(s) 443, 1174
Bsp143I GATC 3 cut(s) 274, 425, 616
Bsp19I CCATGG 2 cut(s) 1311, 1359
BspACI CCGC 2 cut(s) 842, 1332
BspANI GGCC 1 cut(s) 792
BspCNI CTCAG 1 cut(s) 24
BspLI GGNNCC 3 cut(s) 1153, 1233, 1336
BspMI ACCTGC 2 cut(s) 599, 720
BspPI GGATC 3 cut(s) 282, 433, 624
BsrDI GCAATG 2 cut(s) 197, 477
BsrI ACTGG 2 cut(s) 877, 973
BssECI CCNNGG 5 cut(s) 313, 601, 1063, 1311, 1359
BssMI GATC 3 cut(s) 274, 425, 616
BssNI GRCGYC 1 cut(s) 781
BssT1I CCWWGG 5 cut(s) 313, 601, 1063, 1311, 1359
Bst2UI CCWGG 3 cut(s) 464, 933, 1083
Bst4CI ACNGT 4 cut(s) 20, 1013, 1271, 1586
Bst6I CTCTTC 1 cut(s) 1185
BstACI GRCGYC 1 cut(s) 781
BstAPI GCANNNNNTGC 1 cut(s) 850
BstC8I GCNNGC 2 cut(s) 744, 790
BstDEI CTNAG 2 cut(s) 11, 620
BstDSI CCRYGG 2 cut(s) 1311, 1359
BstENI CCTNNNNNAGG 1 cut(s) 1095
BstHHI GCGC 1 cut(s) 768
BstKTI GATC 3 cut(s) 277, 428, 619
BstMAI GTCTC 2 cut(s) 89, 95
BstMBI GATC 3 cut(s) 274, 425, 616
BstMWI GCNNNNNNNGC 2 cut(s) 789, 850
BstNI CCWGG 3 cut(s) 464, 933, 1083
BstNSI RCATGY 3 cut(s) 536, 968, 1079
BstSCI CCNGG 4 cut(s) 441, 462, 931, 1081
BstSFI CTRYAG 2 cut(s) 366, 1029
BstV1I GCAGC 2 cut(s) 1136, 1491
BstX2I RGATCY 2 cut(s) 274, 616
BstXI CCANNNNNNTGG 1 cut(s) 602
BstYI RGATCY 2 cut(s) 274, 616
BsuRI GGCC 1 cut(s) 792
BtgI CCRYGG 2 cut(s) 1311, 1359
BtsI GCAGTG 1 cut(s) 728
BtsIMutI CAGTG 5 cut(s) 25, 447, 728, 870, 1276
BveI ACCTGC 2 cut(s) 599, 720
Cac8I GCNNGC 2 cut(s) 744, 790
CfoI GCGC 1 cut(s) 768
Cfr13I GGNCC 2 cut(s) 1152, 1335
CseI GACGC 1 cut(s) 789
Csp6I GTAC 2 cut(s) 1260, 1458
CviQI GTAC 2 cut(s) 1260, 1458
DdeI CTNAG 2 cut(s) 11, 620
DpnI GATC 3 cut(s) 276, 427, 618
DpnII GATC 3 cut(s) 274, 425, 616
DraIII CACNNNGTG 1 cut(s) 107
DriI GACNNNNNGTC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 790
Eam1104I CTCTTC 1 cut(s) 1185
Eam1105I GACNNNNNGTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 1185
Eco130I CCWWGG 5 cut(s) 313, 601, 1063, 1311, 1359
Eco24I GRGCYC 1 cut(s) 443
Eco47I GGWCC 2 cut(s) 1152, 1335
Eco57I CTGAAG 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 1095
EcoO109I RGGNCCY 2 cut(s) 1152, 1335
EcoRI GAATTC 1 cut(s) 1086
EcoRII CCWGG 3 cut(s) 462, 931, 1081
EcoT14I CCWWGG 5 cut(s) 313, 601, 1063, 1311, 1359
EcoT38I GRGCYC 1 cut(s) 443
ErhI CCWWGG 5 cut(s) 313, 601, 1063, 1311, 1359
FalI AAGNNNNNCTT 2 cut(s) 388, 420
FauI CCCGC 1 cut(s) 1325
FblI GTMKAC 1 cut(s) 778
Fnu4HI GCNGC 2 cut(s) 1125, 1505
FriOI GRGCYC 1 cut(s) 443
Fsp4HI GCNGC 2 cut(s) 1125, 1505
FspBI CTAG 7 cut(s) 203, 354, 491, 785, 821, 1236, 1395
GlaI GCGC 1 cut(s) 767
GluI GCNGC 2 cut(s) 1125, 1505
GsuI CTGGAG 1 cut(s) 1065
HaeIII GGCC 1 cut(s) 792
HapII CCGG 1 cut(s) 443
HgaI GACGC 1 cut(s) 789
HhaI GCGC 1 cut(s) 768
Hin1I GRCGYC 1 cut(s) 781
Hin6I GCGC 1 cut(s) 766
HinP1I GCGC 1 cut(s) 766
HincII GTYRAC 9 cut(s) 6, 250, 501, 530, 1005, 1188, 1280, 1369, 1408
HindII GTYRAC 9 cut(s) 6, 250, 501, 530, 1005, 1188, 1280, 1369, 1408
HpaII CCGG 1 cut(s) 443
HphI GGTGA 2 cut(s) 30, 422
Hpy188I TCNGA 4 cut(s) 127, 922, 1053, 1140
Hpy188III TCNNGA 7 cut(s) 328, 423, 950, 1098, 1299, 1439, 1478
HpyAV CCTTC 6 cut(s) 121, 122, 407, 801, 1101, 1305
HpyCH4III ACNGT 4 cut(s) 20, 1013, 1271, 1586
HpyCH4V TGCA 6 cut(s) 182, 896, 962, 1124, 1507, 1555
HpyF10VI GCNNNNNNNGC 2 cut(s) 789, 850
HpyF3I CTNAG 2 cut(s) 11, 620
Hsp92I GRCGYC 1 cut(s) 781
HspAI GCGC 1 cut(s) 766
Kzo9I GATC 3 cut(s) 274, 425, 616
LmnI GCTCC 4 cut(s) 629, 1084, 1534, 1567
Lsp1109I GCAGC 2 cut(s) 1136, 1491
LweI GCATC 5 cut(s) 163, 652, 1111, 1136, 1154
MaeI CTAG 7 cut(s) 203, 354, 491, 785, 821, 1236, 1395
MaeIII GTNAC 5 cut(s) 14, 445, 608, 1021, 1443
MalI GATC 3 cut(s) 276, 427, 618
MboI GATC 3 cut(s) 274, 425, 616
MboII GAAGA 7 cut(s) 164, 384, 920, 965, 1007, 1172, 1514
MfeI CAATTG 2 cut(s) 832, 1508
MflI RGATCY 2 cut(s) 274, 616
MhlI GDGCHC 2 cut(s) 443, 1174
MlsI TGGCCA 1 cut(s) 792
MluCI AATT 8 cut(s) 168, 229, 269, 361, 749, 832, 1086, 1508
MluNI TGGCCA 1 cut(s) 792
MlyI GAGTC 3 cut(s) 670, 1010, 1451
MmeI TCCRAC 1 cut(s) 1438
Mox20I TGGCCA 1 cut(s) 792
MroXI GAANNNNTTC 1 cut(s) 1090
MscI TGGCCA 1 cut(s) 792
MseI TTAA 5 cut(s) 564, 693, 762, 1454, 1600
MslI CAYNNNNRTG 2 cut(s) 1269, 1425
Msp20I TGGCCA 1 cut(s) 792
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 4 cut(s) 443, 464, 933, 1083
MunI CAATTG 2 cut(s) 832, 1508
Mva1269I GAATGC 2 cut(s) 939, 1213
MvaI CCWGG 3 cut(s) 464, 933, 1083
MwoI GCNNNNNNNGC 2 cut(s) 789, 850
NciI CCSGG 1 cut(s) 443
NcoI CCATGG 2 cut(s) 1311, 1359
NdeII GATC 3 cut(s) 274, 425, 616
NlaIV GGNNCC 3 cut(s) 1153, 1233, 1336
NmuCI GTSAC 3 cut(s) 14, 445, 1443
NspI RCATGY 3 cut(s) 536, 968, 1079
PaqCI CACCTGC 1 cut(s) 599
PctI GAATGC 2 cut(s) 939, 1213
PdmI GAANNNNTTC 1 cut(s) 1090
PfeI GAWTC 7 cut(s) 242, 350, 419, 452, 467, 1379, 1391
PflMI CCANNNNNTGG 1 cut(s) 319
PfoI TCCNGGA 1 cut(s) 1081
PkrI GCNGC 2 cut(s) 1126, 1506
PleI GAGTC 3 cut(s) 670, 1009, 1450
PpsI GAGTC 3 cut(s) 670, 1009, 1450
PpuMI RGGWCCY 2 cut(s) 1152, 1335
PsiI TTATAA 1 cut(s) 360
Psp5II RGGWCCY 2 cut(s) 1152, 1335
Psp6I CCWGG 3 cut(s) 462, 931, 1081
PspGI CCWGG 3 cut(s) 462, 931, 1081
PspN4I GGNNCC 3 cut(s) 1153, 1233, 1336
PspPI GGNCC 2 cut(s) 1152, 1335
PspPPI RGGWCCY 2 cut(s) 1152, 1335
PsuI RGATCY 2 cut(s) 274, 616
RsaI GTAC 2 cut(s) 1261, 1459
RsaNI GTAC 2 cut(s) 1260, 1458
RseI CAYNNNNRTG 2 cut(s) 1269, 1425
SaqAI TTAA 5 cut(s) 564, 693, 762, 1454, 1600
SatI GCNGC 2 cut(s) 1125, 1505
Sau3AI GATC 3 cut(s) 274, 425, 616
Sau96I GGNCC 2 cut(s) 1152, 1335
ScaI AGTACT 1 cut(s) 1261
SchI GAGTC 3 cut(s) 670, 1010, 1451
ScrFI CCNGG 4 cut(s) 443, 464, 933, 1083
SduI GDGCHC 2 cut(s) 443, 1174
SfaNI GCATC 5 cut(s) 163, 652, 1111, 1136, 1154
SfcI CTRYAG 2 cut(s) 366, 1029
SinI GGWCC 2 cut(s) 1152, 1335
SmiMI CAYNNNNRTG 2 cut(s) 1269, 1425
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 8 cut(s) 168, 229, 269, 361, 749, 832, 1086, 1508
SsiI CCGC 2 cut(s) 842, 1332
SspMI CTAG 7 cut(s) 203, 354, 491, 785, 821, 1236, 1395
StyD4I CCNGG 4 cut(s) 441, 462, 931, 1081
StyI CCWWGG 5 cut(s) 313, 601, 1063, 1311, 1359
TaaI ACNGT 4 cut(s) 20, 1013, 1271, 1586
TaqI TCGA 3 cut(s) 32, 437, 1244
TaqII GACCGA 1 cut(s) 846
TasI AATT 8 cut(s) 168, 229, 269, 361, 749, 832, 1086, 1508
TatI WGTACW 1 cut(s) 1259
TfiI GAWTC 7 cut(s) 242, 350, 419, 452, 467, 1379, 1391
Tru1I TTAA 5 cut(s) 564, 693, 762, 1454, 1600
Tru9I TTAA 5 cut(s) 564, 693, 762, 1454, 1600
TscAI CASTG 5 cut(s) 25, 454, 728, 877, 1276
TseFI GTSAC 3 cut(s) 14, 445, 1443
TseI GCWGC 2 cut(s) 1124, 1504
Tsp45I GTSAC 3 cut(s) 14, 445, 1443
TspGWI ACGGA 3 cut(s) 69, 95, 272
TspRI CASTG 5 cut(s) 25, 454, 728, 877, 1276
Van91I CCANNNNNTGG 1 cut(s) 319
VpaK11BI GGWCC 2 cut(s) 1152, 1335
XagI CCTNNNNNAGG 1 cut(s) 1095
XapI RAATTY 3 cut(s) 229, 749, 1086
XceI RCATGY 3 cut(s) 536, 968, 1079
XmiI GTMKAC 1 cut(s) 778
XmnI GAANNNNTTC 1 cut(s) 1090
XspI CTAG 7 cut(s) 203, 354, 491, 785, 821, 1236, 1395
ZrmI AGTACT 1 cut(s) 1261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.