Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005916

Physical Location & Seq

Genomic Coordinates Forward (+)

3325871 .. 3328292

Gene Structure 2422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGAGTCCTGGAGTTTTGGTTCAGAAGAGAAAGGGTTTTTGTTTCCGGAAGAAATCGATATACCAACTGATGCATTTTCAAGGAATACTAGAAAAGCATTCCTGGACTTGGATGACAAAACTTGCTTTAATTTTGGCAAGGAATCAGTTGACAGCGTGGGGTTCATGGATTTGGGGTTCCCTGATATTAACCAAGGAGTGGAAATCTTGAATGGTGTGGTTTGTAATGATTCTAGTTATAATTCTGTAGCTTCACCGAGTTGTTTGATTAGTTCAAATTCATCTTTTGGTGAGGGAGAATCCGGGTCGAAGTTTTCAGGCCCTGTGACTGAATGCAGTAGTATGGATTCATCAATGATTGCTTTGAAGCTAGGGAGCTTGGCTGATAGCAGAGGTGGGCAGAATATTCAGCATTCGATTTCTACAGAGAGGTCAAAAAAAGCTGGCAATGGCCCGAGGAGTTTGTACCATCCCGCTCCCACCTGCCAGGTACATGGGTGTAACATGGATCTTACCTTCTCAAAGGATTACCACAAGAGGCATAGGGTTTGTGATGCTCACTCCAAGACTGCCGTAGTGATTGTTAATGGAATCGAGCAGCGGTTTTGCCAGCAGTGCAGCAGGTTTCATCTTCTTGCTGAATTTGATGATGTGAAGCGCAGTTGTCGTAGGCGCCTAGCTGGCCACAACCTTCGCCGAAGGAAGCCTCTACTAGATACCCTCGATTGTAAACCGCATAAGTTGATCGATCCGGACATGTCAAGGAAACGGGTATATGGGAAGCTCCTTTCCGAAGGGCACACCCTCTGTTTTTTCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

274

Amino Acids

30.32

Weight (kDa)

7.56

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005916)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29640
malus_domestica	MD13G1059500.v1.1 MD16G1058800.v1.1
prunus_persica	Prupe.1G290200_v2.0.a1 Prupe.1G290200_v2.0.a1 Prupe.1G290200_v2.0.a1 Prupe.1G290200_v2.0.a1 Prupe.1G290200_v2.0.a1 Prupe.1G290200_v2.0.a1 Prupe.1G290200_v2.0.a1
pyrus_communis	pycom13g05300 pycom16g05140
rosa_chinensis	RchiOBHm_Chr4g0437871
rosa_laevigata	RLG00000006405
rosa_multiflora	Rmu_sc0008907.1_g000005
rosa_roxburghii	Rroxscaffold_5G00379060
rosa_rugosa	Rorug04G0304800 Rorug04G0304900 Rorug04G0305000 Rorug04G0305000 Rorug04G0305100
rosa_samantha	Rh4AG356900 Rh4BG367700 Rh4CG381700 Rh4DG362200 Rh4DG362300
rosa_wichuraiana	Rw0G011580 Rw0G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AarI	CACCTGC	1 cut(s)	491
Acc36I	ACCTGC	2 cut(s)	491, 612
AccB1I	GGYRCC	1 cut(s)	672
AccB7I	CCANNNNNTGG	1 cut(s)	199
AccBSI	CCGCTC	1 cut(s)	476
AccIII	TCCGGA	2 cut(s)	46, 751
AciI	CCGC	3 cut(s)	474, 601, 734
AclWI	GGATC	2 cut(s)	516, 743
AcoI	YGGCCR	1 cut(s)	682
AcsI	RAATTY	2 cut(s)	277, 641
AcyI	GRCGYC	1 cut(s)	673
AfaI	GTAC	2 cut(s)	467, 492
AfiI	CCNNNNNNNGG	2 cut(s)	109, 199
AflIII	ACRYGT	1 cut(s)	756
AgsI	TTSAA	4 cut(s)	81, 211, 276, 367
AjnI	CCWGG	3 cut(s)	8, 102, 486
AloI	GAACNNNNNNTCC	3 cut(s)	36, 161, 193
AluBI	AGCT	6 cut(s)	251, 370, 378, 443, 680, 784
AluI	AGCT	6 cut(s)	251, 370, 378, 443, 680, 784
AlwI	GGATC	2 cut(s)	516, 743
AlwNI	CAGNNNCTG	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	454
Aor13HI	TCCGGA	2 cut(s)	46, 751
AoxI	GGCC	3 cut(s)	319, 451, 682
ApeKI	GCWGC	2 cut(s)	598, 618
ApoI	RAATTY	2 cut(s)	277, 641
AspLEI	GCGC	2 cut(s)	660, 675
AspS9I	GGNCC	2 cut(s)	320, 452
AsuC2I	CCSGG	1 cut(s)	304
AsuHPI	GGTGA	2 cut(s)	246, 302
AvaI	CYCGRG	1 cut(s)	454
BaeGI	GKGCMC	1 cut(s)	801
BaeI	ACNNNNGTAYC	2 cut(s)	482, 515
BalI	TGGCCA	1 cut(s)	684
BanI	GGYRCC	1 cut(s)	672
BbvI	GCAGC	2 cut(s)	610, 630
BccI	CCATC	1 cut(s)	477
BceAI	ACGGC	1 cut(s)	557
BciT130I	CCWGG	3 cut(s)	10, 104, 488
BcnI	CCSGG	1 cut(s)	304
BfaI	CTAG	5 cut(s)	90, 234, 371, 677, 713
BfmI	CTRYAG	2 cut(s)	246, 423
BfoI	RGCGCY	1 cut(s)	676
BfuAI	ACCTGC	2 cut(s)	491, 612
BglI	GCCNNNNNGGC	1 cut(s)	681
BisI	GCNGC	2 cut(s)	599, 619
BlsI	GCNGC	2 cut(s)	600, 620
Bme1390I	CCNGG	4 cut(s)	10, 104, 304, 488
BmeT110I	CYCGRG	1 cut(s)	454
BmgT120I	GGNCC	2 cut(s)	320, 452
BmiI	GGNNCC	2 cut(s)	179, 674
BmrFI	CCNGG	4 cut(s)	10, 104, 304, 488
BmsI	GCATC	2 cut(s)	61, 544
BpmI	CTGGAG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	304
Bsa29I	ATCGAT	2 cut(s)	57, 747
BsaHI	GRCGYC	1 cut(s)	673
BsaJI	CCNNGG	2 cut(s)	193, 455
BsaWI	WCCGGW	2 cut(s)	46, 751
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 199
Bse3DI	GCAATG	1 cut(s)	454
BseAI	TCCGGA	2 cut(s)	46, 751
BseBI	CCWGG	3 cut(s)	10, 104, 488
BseCI	ATCGAT	2 cut(s)	57, 747
BseDI	CCNNGG	2 cut(s)	193, 455
BseGI	GGATG	2 cut(s)	118, 469
BseLI	CCNNNNNNNGG	2 cut(s)	109, 199
BseMI	GCAATG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	472
BseSI	GKGCMC	1 cut(s)	801
BseXI	GCAGC	2 cut(s)	610, 630
BsgI	GTGCAG	1 cut(s)	637
BshFI	GGCC	3 cut(s)	321, 453, 684
BshNI	GGYRCC	1 cut(s)	672
BshVI	ATCGAT	2 cut(s)	57, 747
BsiHKCI	CYCGRG	1 cut(s)	454
BsiSI	CCGG	3 cut(s)	47, 303, 752
BslI	CCNNNNNNNGG	2 cut(s)	109, 199
BsmI	GAATGC	3 cut(s)	98, 338, 412
BsnI	GGCC	3 cut(s)	321, 453, 684
BsoBI	CYCGRG	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	801
Bsp13I	TCCGGA	2 cut(s)	46, 751
Bsp143I	GATC	3 cut(s)	508, 744, 748
BspACI	CCGC	3 cut(s)	474, 601, 734
BspANI	GGCC	3 cut(s)	321, 453, 684
BspDI	ATCGAT	2 cut(s)	57, 747
BspEI	TCCGGA	2 cut(s)	46, 751
BspLI	GGNNCC	2 cut(s)	179, 674
BspMI	ACCTGC	2 cut(s)	491, 612
BspPI	GGATC	2 cut(s)	516, 743
BspT107I	GGYRCC	1 cut(s)	672
BsrBI	CCGCTC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	193, 455
BssMI	GATC	3 cut(s)	508, 744, 748
BssNI	GRCGYC	1 cut(s)	673
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	3 cut(s)	10, 104, 488
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	673
BstC8I	GCNNGC	3 cut(s)	445, 611, 682
BstF5I	GGATG	2 cut(s)	118, 469
BstH2I	RGCGCY	1 cut(s)	676
BstHHI	GCGC	2 cut(s)	660, 675
BstKTI	GATC	3 cut(s)	511, 747, 751
BstMBI	GATC	3 cut(s)	508, 744, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	615, 681
BstNI	CCWGG	3 cut(s)	10, 104, 488
BstNSI	RCATGY	1 cut(s)	760
BstSCI	CCNGG	4 cut(s)	8, 102, 302, 486
BstSFI	CTRYAG	2 cut(s)	246, 423
BstSLI	GKGCMC	1 cut(s)	801
BstV1I	GCAGC	2 cut(s)	610, 630
BstX2I	RGATCY	1 cut(s)	508
BstXI	CCANNNNNNTGG	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	508
Bsu15I	ATCGAT	2 cut(s)	57, 747
BsuRI	GGCC	3 cut(s)	321, 453, 684
BsuTUI	ATCGAT	2 cut(s)	57, 747
BtsCI	GGATG	2 cut(s)	118, 469
BtsI	GCAGTG	1 cut(s)	620
BtsIMutI	CAGTG	1 cut(s)	620
BveI	ACCTGC	2 cut(s)	491, 612
Cac8I	GCNNGC	3 cut(s)	445, 611, 682
CaiI	CAGNNNCTG	1 cut(s)	323
CfoI	GCGC	2 cut(s)	660, 675
Cfr13I	GGNCC	2 cut(s)	320, 452
ClaI	ATCGAT	2 cut(s)	57, 747
Csp6I	GTAC	2 cut(s)	466, 491
CviAII	CATG	4 cut(s)	166, 494, 505, 757
CviQI	GTAC	2 cut(s)	466, 491
DinI	GGCGCC	1 cut(s)	674
DpnI	GATC	3 cut(s)	510, 746, 750
DpnII	GATC	3 cut(s)	508, 744, 748
EaeI	YGGCCR	1 cut(s)	682
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	320
EcoRII	CCWGG	3 cut(s)	8, 102, 486
EcoT14I	CCWWGG	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	76
EgeI	GGCGCC	1 cut(s)	674
EheI	GGCGCC	1 cut(s)	674
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	4 cut(s)	169, 497, 508, 760
FatI	CATG	4 cut(s)	165, 493, 504, 756
FauI	CCCGC	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	599, 619
FokI	GGATG	2 cut(s)	125, 456
Fsp4HI	GCNGC	2 cut(s)	599, 619
FspBI	CTAG	5 cut(s)	90, 234, 371, 677, 713
GlaI	GCGC	2 cut(s)	659, 674
GluI	GCNGC	2 cut(s)	599, 619
GsuI	CTGGAG	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	676
HaeIII	GGCC	3 cut(s)	321, 453, 684
HapII	CCGG	3 cut(s)	47, 303, 752
HhaI	GCGC	2 cut(s)	660, 675
Hin1I	GRCGYC	1 cut(s)	673
Hin1II	CATG	4 cut(s)	169, 497, 508, 760
Hin6I	GCGC	2 cut(s)	658, 673
HinP1I	GCGC	2 cut(s)	658, 673
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	6 cut(s)	5, 143, 230, 299, 347, 591
HpaII	CCGG	3 cut(s)	47, 303, 752
HphI	GGTGA	2 cut(s)	246, 302
Hpy166II	GTNNAC	2 cut(s)	151, 731
Hpy188I	TCNGA	3 cut(s)	25, 793, 818
Hpy188III	TCNNGA	3 cut(s)	47, 208, 752
Hpy8I	GTNNAC	2 cut(s)	151, 731
HpyAV	CCTTC	4 cut(s)	526, 693, 701, 788
HpyCH4V	TGCA	3 cut(s)	74, 336, 618
HpyF10VI	GCNNNNNNNGC	2 cut(s)	615, 681
Hsp92I	GRCGYC	1 cut(s)	673
Hsp92II	CATG	4 cut(s)	169, 497, 508, 760
HspAI	GCGC	2 cut(s)	658, 673
KasI	GGCGCC	1 cut(s)	672
Kpn2I	TCCGGA	2 cut(s)	46, 751
Kzo9I	GATC	3 cut(s)	508, 744, 748
LmnI	GCTCC	3 cut(s)	375, 481, 789
Lsp1109I	GCAGC	2 cut(s)	610, 630
LweI	GCATC	2 cut(s)	61, 544
MaeI	CTAG	5 cut(s)	90, 234, 371, 677, 713
MaeIII	GTNAC	2 cut(s)	325, 500
MalI	GATC	3 cut(s)	510, 746, 750
MbiI	CCGCTC	1 cut(s)	476
MboI	GATC	3 cut(s)	508, 744, 748
MboII	GAAGA	3 cut(s)	38, 62, 623
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	1 cut(s)	801
MlsI	TGGCCA	1 cut(s)	684
MluCI	AATT	4 cut(s)	130, 241, 277, 641
MluNI	TGGCCA	1 cut(s)	684
Mly113I	GGCGCC	1 cut(s)	673
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	8 cut(s)	286, 386, 423, 450, 531, 717, 731, 815
Mox20I	TGGCCA	1 cut(s)	684
Mph1103I	ATGCAT	1 cut(s)	76
MroI	TCCGGA	2 cut(s)	46, 751
MscI	TGGCCA	1 cut(s)	684
MseI	TTAA	3 cut(s)	129, 189, 585
Msp20I	TGGCCA	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	601
MspI	CCGG	3 cut(s)	47, 303, 752
MspR9I	CCNGG	4 cut(s)	10, 104, 304, 488
Mva1269I	GAATGC	3 cut(s)	98, 338, 412
MvaI	CCWGG	3 cut(s)	10, 104, 488
MwoI	GCNNNNNNNGC	2 cut(s)	615, 681
NarI	GGCGCC	1 cut(s)	673
NciI	CCSGG	1 cut(s)	304
NdeII	GATC	3 cut(s)	508, 744, 748
NlaIII	CATG	4 cut(s)	169, 497, 508, 760
NlaIV	GGNNCC	2 cut(s)	179, 674
NmuCI	GTSAC	1 cut(s)	325
NsiI	ATGCAT	1 cut(s)	76
NspI	RCATGY	1 cut(s)	760
PaqCI	CACCTGC	1 cut(s)	491
PciI	ACATGT	1 cut(s)	756
PctI	GAATGC	3 cut(s)	98, 338, 412
PfeI	GAWTC	5 cut(s)	143, 230, 299, 347, 591
PflMI	CCANNNNNTGG	1 cut(s)	199
PfoI	TCCNGGA	2 cut(s)	8, 102
PkrI	GCNGC	2 cut(s)	600, 620
PleI	GAGTC	1 cut(s)	13
PluTI	GGCGCC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	13
PscI	ACATGT	1 cut(s)	756
PsiI	TTATAA	1 cut(s)	240
Psp6I	CCWGG	3 cut(s)	8, 102, 486
PspGI	CCWGG	3 cut(s)	8, 102, 486
PspN4I	GGNNCC	2 cut(s)	179, 674
PspPI	GGNCC	2 cut(s)	320, 452
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	508
RsaI	GTAC	2 cut(s)	467, 492
RsaNI	GTAC	2 cut(s)	466, 491
SaqAI	TTAA	3 cut(s)	129, 189, 585
SatI	GCNGC	2 cut(s)	599, 619
Sau3AI	GATC	3 cut(s)	508, 744, 748
Sau96I	GGNCC	2 cut(s)	320, 452
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	4 cut(s)	10, 104, 304, 488
SduI	GDGCHC	1 cut(s)	801
SfaNI	GCATC	2 cut(s)	61, 544
SfcI	CTRYAG	2 cut(s)	246, 423
SfoI	GGCGCC	1 cut(s)	674
Sse9I	AATT	4 cut(s)	130, 241, 277, 641
SsiI	CCGC	3 cut(s)	474, 601, 734
SspDI	GGCGCC	1 cut(s)	672
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	5 cut(s)	90, 234, 371, 677, 713
StyD4I	CCNGG	4 cut(s)	8, 102, 302, 486
StyI	CCWWGG	1 cut(s)	193
TaqI	TCGA	6 cut(s)	57, 308, 416, 594, 723, 747
TasI	AATT	4 cut(s)	130, 241, 277, 641
TfiI	GAWTC	5 cut(s)	143, 230, 299, 347, 591
Tru1I	TTAA	3 cut(s)	129, 189, 585
Tru9I	TTAA	3 cut(s)	129, 189, 585
TscAI	CASTG	1 cut(s)	620
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	2 cut(s)	598, 618
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	4 cut(s)	154, 270, 339, 617
TspRI	CASTG	1 cut(s)	620
Van91I	CCANNNNNTGG	1 cut(s)	199
XapI	RAATTY	2 cut(s)	277, 641
XceI	RCATGY	1 cut(s)	760
XspI	CTAG	5 cut(s)	90, 234, 371, 677, 713
Zsp2I	ATGCAT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.