pycom13g05300

Squamosa promoter-binding-like protein 6

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
3537996 .. 3541621
3626 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g05300.2

Sequence Viewer

Length: 1644 bp
ATGGAGTCTTGGAGTTTTGGTTCAGAAGGGAAAGGGTTTTTGTTTCCGGAAGAAATGGATATGCCAACTGATGCATTTTCAAGGAGTACTAGGAAAGCATTGCTAGAATTGGATAACAAAACTTGCTTTAATTTTGGTAAGGAATCAGTTGATAGCATGGGGTTCATGGATTTGGGATTCCCTGATATTAACCAAGGAGTGGAAATCTTGAATGGTGTGATCGGTAATGATTCTAGTTATAATTCTGTAGCTTCACCTTGTTGTTTGATTAGTTCAAGTTCATCTTTTGGTGATGGGGAATCTGGGTCGAAGTTTTCGAGCCCTGTGACTGAATCTAATAGCATGGATTCATCAATGATTGCTTTGAAGCTAGGGGGGTTTGCTGATAGCAGAGGTGGGCAGAACAGTCAGCATTCGATTTCTAGAGAGAGGTCGAAAAGAGCTGGCAATGGCATGAGGAGTTCATACTATCATGCTCCAACCTGCCAAGTCCATGGTTGTAACATGGATCTTACCTTTTCAAAGGATTACCACAAGAGGCATAGGGTTTGTGATCCTCACTCCAAGACTGCCATAGTGATTGTTAATGGAATTGAACAGCGGTTTTGCCAGCAGTGCAGCAGGTTTCATCTTCTTGCTGAATTTGATGCTGTGAAGCGCAGTTGTCGTAGACGCCTAGCTGGCCACAACCTTCGCCGAAGGAAGCCTCAACTAGATACCCTCGATTGTAAACCGCATAAGTTGATTCGGTCATGCGAAGGAAACGGGTATATGGGAACTTCCTTTTCAAAGGGAACACCCTTTGTTTTTTCGGATATACTTCCAGGTGGCTGCATTCAGTATCCAGAATATGAAGAAGCTAACCTATATGGACGTGTCAAATCTGAAGACAGGTCAACCTACGGCCAGTCTGTAACACCTATACCAAACAGGCAGTTTATTCCAAAATCATTCTGCCATCTGCCTGGCCTTGGAGAACAGCATGCTCTGGGAATTCCCTCGTCAGGAAATGAATACTCTGTCTTTGATACAGCATCAACGGCTGAGAAAGCATTTGAGACTGCATATTCGAGCTGTGCTCATTCTCTTCTGTCAGCTCAATCGCATAACTTATCAAGCAATTCAGCTGGAGTTCAAGTGCCTAGCCCCCTGATAAATCAAAGTGCCCATCGCAGTTTTGGTCAACTTAATGAAAAGACTTCGAGGGTAAACTCCATGGAAAATTGTGGACGAAACAGGTCCTACCCGTTTAGTATGAAATCTATGGGAGCCGACCATATGGAATCAATCAAAATTTCTGATTCTAGGTATGCTGCTGACTTCCAACTTCACACAGACAGGGCTTTGCATCTGTCAGATTGCTTAAGTGACAAGTATTGTGTTTCTCCTGAACGAACTTTTGATTTGCGGCAATTGTCATCACACCTTCAAAGAGTAGAGCATGAGAGAGACTTTTTTCAAGTAAAGCAGGAAAATGGAGAATTCTACTGTTTCCCGACGGGCGTGCAAGCAACAATGTTGCTGGAGGCTGGAGGCAGTTTGGATCTTCAGCAGAATTCCAACATTTCCATACAGAGGCTGGTAGAAACTTTAGATACCATTGGCAGTAACACTCTATTCCGAAAGGAAAATATAGCTATCTAG

Protein Analysis

548

Amino Acids

60.7

Weight (kDa)

6.68

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 240
Acc36I ACCTGC 2 cut(s) 491, 612
AccB7I CCANNNNNTGG 1 cut(s) 199
AccI GTMKAC 1 cut(s) 670
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 3 cut(s) 601, 734, 1408
AclWI GGATC 3 cut(s) 516, 548, 1551
AcoI YGGCCR 2 cut(s) 682, 904
AcsI RAATTY 5 cut(s) 641, 993, 1293, 1481, 1555
AcuI CTGAAG 2 cut(s) 906, 1532
AcyI GRCGYC 1 cut(s) 673
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 4 cut(s) 199, 971, 1004, 1575
AflII CTTAAG 1 cut(s) 1363
AflIII ACRYGT 1 cut(s) 874
AjiI CACGTC 1 cut(s) 875
AjnI CCWGG 2 cut(s) 823, 964
AloI GAACNNNNNNTCC 1 cut(s) 36
AluBI AGCT 9 cut(s) 251, 370, 443, 680, 860, 1074, 1097, 1127, 1637
AluI AGCT 9 cut(s) 251, 370, 443, 680, 860, 1074, 1097, 1127, 1637
Alw21I GWGCWC 1 cut(s) 1081
Alw26I GTCTC 2 cut(s) 1052, 1443
AlwI GGATC 3 cut(s) 516, 548, 1551
AlwNI CAGNNNCTG 1 cut(s) 1579
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 3 cut(s) 682, 904, 967
ApeKI GCWGC 3 cut(s) 618, 831, 1313
ApoI RAATTY 5 cut(s) 641, 993, 1293, 1481, 1555
ArsI GACNNNNNNTTYG 2 cut(s) 1051, 1083
AspLEI GCGC 1 cut(s) 660
AspS9I GGNCC 1 cut(s) 1239
AsuHPI GGTGA 2 cut(s) 246, 302
AvaII GGWCC 1 cut(s) 1239
BaeGI GKGCMC 1 cut(s) 1168
BalI TGGCCA 1 cut(s) 684
BanII GRGCYC 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 894
Bbv12I GWGCWC 1 cut(s) 1081
BbvI GCAGC 3 cut(s) 630, 818, 1300
BccI CCATC 3 cut(s) 287, 966, 1176
BceAI ACGGC 2 cut(s) 919, 1056
BcgI CGANNNNNNTGC 2 cut(s) 1486, 1520
BciT130I CCWGG 2 cut(s) 825, 966
BciVI GTATCC 1 cut(s) 852
BcoDI GTCTC 2 cut(s) 1052, 1443
BfmI CTRYAG 1 cut(s) 246
BfrI CTTAAG 1 cut(s) 1363
BfuAI ACCTGC 2 cut(s) 491, 612
BfuI GTATCC 1 cut(s) 852
BglI GCCNNNNNGGC 1 cut(s) 681
BisI GCNGC 4 cut(s) 619, 832, 1314, 1409
BlsI GCNGC 4 cut(s) 620, 833, 1315, 1410
BmcAI AGTACT 1 cut(s) 88
Bme1390I CCNGG 2 cut(s) 825, 966
Bme18I GGWCC 1 cut(s) 1239
BmgBI CACGTC 1 cut(s) 875
BmgT120I GGNCC 1 cut(s) 1239
BmiI GGNNCC 1 cut(s) 1270
BmrFI CCNGG 2 cut(s) 825, 966
BmsI GCATC 4 cut(s) 61, 637, 1043, 1357
BpiI GAAGAC 1 cut(s) 894
BplI GAGNNNNNCTC 2 cut(s) 1063, 1095
BpmI CTGGAG 3 cut(s) 1149, 1544, 1551
BsaHI GRCGYC 1 cut(s) 673
BsaJI CCNNGG 4 cut(s) 193, 493, 970, 1215
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 3 cut(s) 34, 1122, 1152
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 971, 1004, 1575
Bse1I ACTGG 1 cut(s) 907
Bse3DI GCAATG 2 cut(s) 98, 454
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 2 cut(s) 825, 966
BseDI CCNNGG 4 cut(s) 193, 493, 970, 1215
BseLI CCNNNNNNNGG 4 cut(s) 199, 971, 1004, 1575
BseMI GCAATG 2 cut(s) 98, 454
BseMII CTCAG 1 cut(s) 1035
BseNI ACTGG 1 cut(s) 907
BseRI GAGGAG 1 cut(s) 472
BseSI GKGCMC 1 cut(s) 1168
BseXI GCAGC 3 cut(s) 630, 818, 1300
BsgI GTGCAG 1 cut(s) 637
BshFI GGCC 3 cut(s) 684, 906, 969
BsiHKAI GWGCWC 1 cut(s) 1081
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 4 cut(s) 199, 971, 1004, 1575
BsmAI GTCTC 2 cut(s) 1052, 1443
BsmI GAATGC 2 cut(s) 412, 834
BsnI GGCC 3 cut(s) 684, 906, 969
Bsp1286I GDGCHC 3 cut(s) 323, 1081, 1168
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 4 cut(s) 219, 508, 553, 1543
Bsp19I CCATGG 2 cut(s) 493, 1215
BspACI CCGC 3 cut(s) 601, 734, 1408
BspANI GGCC 3 cut(s) 684, 906, 969
BspCNI CTCAG 1 cut(s) 1036
BspEI TCCGGA 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 1270
BspMI ACCTGC 2 cut(s) 491, 612
BspPI GGATC 3 cut(s) 516, 548, 1551
BspTI CTTAAG 1 cut(s) 1363
BsrDI GCAATG 2 cut(s) 98, 454
BsrI ACTGG 1 cut(s) 907
BssECI CCNNGG 4 cut(s) 193, 493, 970, 1215
BssMI GATC 4 cut(s) 219, 508, 553, 1543
BssNI GRCGYC 1 cut(s) 673
BssT1I CCWWGG 4 cut(s) 193, 493, 970, 1215
Bst2UI CCWGG 2 cut(s) 825, 966
Bst4CI ACNGT 2 cut(s) 407, 1490
Bst6I CTCTTC 1 cut(s) 1092
BstACI GRCGYC 1 cut(s) 673
BstAFI CTTAAG 1 cut(s) 1363
BstC8I GCNNGC 6 cut(s) 445, 611, 682, 984, 1505, 1509
BstDEI CTNAG 1 cut(s) 1044
BstDSI CCRYGG 2 cut(s) 493, 1215
BstHHI GCGC 1 cut(s) 660
BstKTI GATC 4 cut(s) 222, 511, 556, 1546
BstMAI GTCTC 2 cut(s) 1052, 1443
BstMBI GATC 4 cut(s) 219, 508, 553, 1543
BstMWI GCNNNNNNNGC 4 cut(s) 615, 681, 1040, 1049
BstNI CCWGG 2 cut(s) 825, 966
BstNSI RCATGY 1 cut(s) 986
BstSCI CCNGG 2 cut(s) 823, 964
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 1168
BstV1I GCAGC 3 cut(s) 630, 818, 1300
BstV2I GAAGAC 1 cut(s) 894
BstX2I RGATCY 2 cut(s) 508, 1543
BstXI CCANNNNNNTGG 2 cut(s) 494, 965
BstYI RGATCY 2 cut(s) 508, 1543
BsuI GTATCC 1 cut(s) 852
BsuRI GGCC 3 cut(s) 684, 906, 969
BtgI CCRYGG 2 cut(s) 493, 1215
BtgZI GCGATG 1 cut(s) 1154
BtrI CACGTC 1 cut(s) 875
BtsI GCAGTG 1 cut(s) 620
BtsIMutI CAGTG 1 cut(s) 620
BveI ACCTGC 2 cut(s) 491, 612
Cac8I GCNNGC 6 cut(s) 445, 611, 682, 984, 1505, 1509
CaiI CAGNNNCTG 1 cut(s) 1579
CfoI GCGC 1 cut(s) 660
Cfr13I GGNCC 1 cut(s) 1239
CseI GACGC 1 cut(s) 681
Csp6I GTAC 1 cut(s) 87
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 1 cut(s) 1044
DpnI GATC 4 cut(s) 221, 510, 555, 1545
DpnII GATC 4 cut(s) 219, 508, 553, 1543
EaeI YGGCCR 2 cut(s) 682, 904
Eam1104I CTCTTC 1 cut(s) 1092
EarI CTCTTC 1 cut(s) 1092
Eco130I CCWWGG 4 cut(s) 193, 493, 970, 1215
Eco24I GRGCYC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 1239
Eco57I CTGAAG 2 cut(s) 906, 1532
EcoO109I RGGNCCY 1 cut(s) 1239
EcoRI GAATTC 3 cut(s) 993, 1481, 1555
EcoRII CCWGG 2 cut(s) 823, 964
EcoT14I CCWWGG 4 cut(s) 193, 493, 970, 1215
EcoT22I ATGCAT 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 323
ErhI CCWWGG 4 cut(s) 193, 493, 970, 1215
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FauNDI CATATG 1 cut(s) 1278
FblI GTMKAC 1 cut(s) 670
Fnu4HI GCNGC 4 cut(s) 619, 832, 1314, 1409
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 4 cut(s) 619, 832, 1314, 1409
GlaI GCGC 1 cut(s) 659
GluI GCNGC 4 cut(s) 619, 832, 1314, 1409
GsuI CTGGAG 3 cut(s) 1149, 1544, 1551
HaeIII GGCC 3 cut(s) 684, 906, 969
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 681
HhaI GCGC 1 cut(s) 660
Hin1I GRCGYC 1 cut(s) 673
Hin6I GCGC 1 cut(s) 658
HinP1I GCGC 1 cut(s) 658
HincII GTYRAC 2 cut(s) 897, 1184
HindII GTYRAC 2 cut(s) 897, 1184
HpaII CCGG 1 cut(s) 47
HphI GGTGA 2 cut(s) 246, 302
Hpy166II GTNNAC 6 cut(s) 671, 731, 897, 1184, 1210, 1229
Hpy188I TCNGA 6 cut(s) 25, 814, 886, 1300, 1357, 1622
Hpy188III TCNNGA 7 cut(s) 47, 208, 423, 845, 1005, 1388, 1495
Hpy8I GTNNAC 6 cut(s) 671, 731, 897, 1184, 1210, 1229
Hpy99I CGWCG 1 cut(s) 1501
HpyAV CCTTC 5 cut(s) 20, 693, 701, 752, 1436
HpyCH4III ACNGT 2 cut(s) 407, 1490
HpyCH4IV ACGT 1 cut(s) 874
HpyCH4V TGCA 6 cut(s) 74, 618, 834, 1064, 1348, 1507
HpyF10VI GCNNNNNNNGC 4 cut(s) 615, 681, 1040, 1049
HpyF3I CTNAG 1 cut(s) 1044
HpySE526I ACGT 1 cut(s) 874
Hsp92I GRCGYC 1 cut(s) 673
HspAI GCGC 1 cut(s) 658
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 4 cut(s) 219, 508, 553, 1543
LmnI GCTCC 2 cut(s) 481, 1268
Lsp1109I GCAGC 3 cut(s) 630, 818, 1300
LweI GCATC 4 cut(s) 61, 637, 1043, 1357
MaeII ACGT 1 cut(s) 874
MaeIII GTNAC 5 cut(s) 325, 500, 913, 1367, 1607
MalI GATC 4 cut(s) 221, 510, 555, 1545
MboI GATC 4 cut(s) 219, 508, 553, 1543
MboII GAAGA 6 cut(s) 62, 623, 866, 899, 1079, 1538
MfeI CAATTG 1 cut(s) 1412
MflI RGATCY 2 cut(s) 508, 1543
MhlI GDGCHC 3 cut(s) 323, 1081, 1168
MlsI TGGCCA 1 cut(s) 684
MluNI TGGCCA 1 cut(s) 684
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 3 cut(s) 503, 1348, 1584
Mox20I TGGCCA 1 cut(s) 684
Mph1103I ATGCAT 1 cut(s) 76
MroI TCCGGA 1 cut(s) 46
MscI TGGCCA 1 cut(s) 684
MseI TTAA 5 cut(s) 129, 189, 585, 1188, 1364
Msp20I TGGCCA 1 cut(s) 684
MspA1I CMGCKG 2 cut(s) 601, 1127
MspCI CTTAAG 1 cut(s) 1363
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 825, 966
MunI CAATTG 1 cut(s) 1412
Mva1269I GAATGC 2 cut(s) 412, 834
MvaI CCWGG 2 cut(s) 825, 966
MwoI GCNNNNNNNGC 4 cut(s) 615, 681, 1040, 1049
NcoI CCATGG 2 cut(s) 493, 1215
NdeI CATATG 1 cut(s) 1278
NdeII GATC 4 cut(s) 219, 508, 553, 1543
NlaIV GGNNCC 1 cut(s) 1270
NmuCI GTSAC 2 cut(s) 325, 1367
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 1 cut(s) 986
PaeI GCATGC 1 cut(s) 986
PcsI WCGNNNNNNNCGW 1 cut(s) 314
PctI GAATGC 2 cut(s) 412, 834
PfeI GAWTC 9 cut(s) 143, 177, 230, 299, 332, 347, 745, 1283, 1301
PflMI CCANNNNNTGG 1 cut(s) 199
PkrI GCNGC 4 cut(s) 620, 833, 1315, 1410
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 1239
PsiI TTATAA 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 1239
Psp6I CCWGG 2 cut(s) 823, 964
PspGI CCWGG 2 cut(s) 823, 964
PspN4I GGNNCC 1 cut(s) 1270
PspPI GGNCC 1 cut(s) 1239
PspPPI RGGWCCY 1 cut(s) 1239
PstNI CAGNNNCTG 1 cut(s) 1579
PsuI RGATCY 2 cut(s) 508, 1543
PvuII CAGCTG 1 cut(s) 1127
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SaqAI TTAA 5 cut(s) 129, 189, 585, 1188, 1364
SatI GCNGC 4 cut(s) 619, 832, 1314, 1409
Sau3AI GATC 4 cut(s) 219, 508, 553, 1543
Sau96I GGNCC 1 cut(s) 1239
ScaI AGTACT 1 cut(s) 88
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 825, 966
SduI GDGCHC 3 cut(s) 323, 1081, 1168
SfaNI GCATC 4 cut(s) 61, 637, 1043, 1357
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 1239
SmlI CTYRAG 1 cut(s) 1363
SmoI CTYRAG 1 cut(s) 1363
SphI GCATGC 1 cut(s) 986
SsiI CCGC 3 cut(s) 601, 734, 1408
StyD4I CCNGG 2 cut(s) 823, 964
StyI CCWWGG 4 cut(s) 193, 493, 970, 1215
TaaI ACNGT 2 cut(s) 407, 1490
TaiI ACGT 1 cut(s) 877
TaqI TCGA 7 cut(s) 308, 317, 416, 434, 723, 1070, 1202
TaqII GACCGA 1 cut(s) 738
TatI WGTACW 1 cut(s) 86
TauI GCSGC 1 cut(s) 1411
TfiI GAWTC 9 cut(s) 143, 177, 230, 299, 332, 347, 745, 1283, 1301
Tru1I TTAA 5 cut(s) 129, 189, 585, 1188, 1364
Tru9I TTAA 5 cut(s) 129, 189, 585, 1188, 1364
TscAI CASTG 1 cut(s) 620
TseFI GTSAC 2 cut(s) 325, 1367
TseI GCWGC 3 cut(s) 618, 831, 1313
Tsp45I GTSAC 2 cut(s) 325, 1367
TspDTI ATGAA 9 cut(s) 154, 270, 339, 453, 617, 867, 1026, 1206, 1271
TspRI CASTG 1 cut(s) 620
Van91I CCANNNNNTGG 1 cut(s) 199
Vha464I CTTAAG 1 cut(s) 1363
VpaK11BI GGWCC 1 cut(s) 1239
XapI RAATTY 5 cut(s) 641, 993, 1293, 1481, 1555
XbaI TCTAGA 1 cut(s) 422
XceI RCATGY 1 cut(s) 986
XcmI CCANNNNNNNNNTGG 2 cut(s) 1175, 1576
XmiI GTMKAC 1 cut(s) 670
ZrmI AGTACT 1 cut(s) 88
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.