Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005916

Physical Location & Seq

Genomic Coordinates Forward (+)

48117455 .. 48119346

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0304900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGAGGTTTCTGGATTAGTTTCCCGCCAAGTTCCGTGCTTTTCCGGCGCCGGAATCGATACCCGGTCTGCAAATTCATCGTTTTCCGGCGACGTCCACTTTCCGGGTCGTAATGAATTTGGAGTGAGTTTGAGGACCCGAAGGGCTATGAGTTCTGGGTTTTGCGATAAGGGGCATGTGGAGTATTATTATTCTGGTCCCAGATGCGGTGGTAATAAGAAGGAGAAGGAGAAGGAGATCAAGAAGAAATTGAAGTTGCTTAAAGGATTGTCGGAGCTGTCTGCGTCTTCTCAGATTAGTACTGGGTTGGATTCCGAGGAGGGTTTGGCTGCTCAAGTTCAGGGGAAGCTGATTTCGGAAGGTGCAGAAGCATTGCTACAGCAATTGGAACAGGTAAGAGCTGAGGAGAAGGAGTTGAAGAAAAAGAAGAAAGAAGAGAAGGCGAGGCTTAAAGCAGAGCGGATGAAAACCATGAAGGACTGTGAATCGTCATCTTCATCGTCTTCATCTGAGTCGAGTGAGAGTGAATGTGGGGAGGTGGTTGACATGAACAGCCTGAGAGGTGAGGTCCCTGCCCAACCGATACTAGAGGGTTTGCAGCCATCGACCCAAGGAGGGGTGGCATTATTGACCCAGCCGAGTTCGGTGACCACACTTCAAGAAGATAAATGCTGCACTGGAGCTAGTACTAGTTGTGGCAGCAGTGATAGTATTGGTCCTAACAATGCGGCTAGTAGCTCAGTTATGGAAGCATCTGTTGTGACGAAGATTGAAGTATGCATGGGCAAAAAGTGCAAGACATCAGGAGGTGTAGCCTTGTTGGAAGAATTTGAGAGGTTGATGGGTGTCGAAGGAAGTGTTGTTGGGTGCAAGTGTATGGGAAAATGCAAAAATGGTCCAAATGTGAGGGTTTTGAATTCTCTGGATGAGATTGAATCCGAAGAAGGAACAGAGGACTCTGTAAGGAATCCCACTAATCCTTTGTACATTGGAGTGGGGCTGGAAGATGTGAGCCTCATCGTGGCCAACTTAATGGGGGAAGTCAAGAAGGATTTGGGGCTTGCCACTTCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0098542 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

358

Amino Acids

37.95

Weight (kDa)

5.4

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005916)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29640
malus_domestica	MD13G1059500.v1.1 MD16G1058800.v1.1
prunus_persica	Prupe.1G290200_v2.0.a1 Prupe.1G290200_v2.0.a1 Prupe.1G290200_v2.0.a1 Prupe.1G290200_v2.0.a1 Prupe.1G290200_v2.0.a1 Prupe.1G290200_v2.0.a1 Prupe.1G290200_v2.0.a1
pyrus_communis	pycom13g05300 pycom16g05140
rosa_chinensis	RchiOBHm_Chr4g0437871
rosa_laevigata	RLG00000006405
rosa_multiflora	Rmu_sc0008907.1_g000005
rosa_roxburghii	Rroxscaffold_5G00379060
rosa_rugosa	Rorug04G0304800 Rorug04G0304900 Rorug04G0305000 Rorug04G0305000 Rorug04G0305100
rosa_samantha	Rh4AG356900 Rh4BG367700 Rh4CG381700 Rh4DG362200 Rh4DG362300
rosa_wichuraiana	Rw0G011580 Rw0G016100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	47
AccBSI	CCGCTC	1 cut(s)	460
AciI	CCGC	4 cut(s)	25, 207, 460, 728
AcoI	YGGCCR	1 cut(s)	1023
AcsI	RAATTY	4 cut(s)	73, 116, 827, 916
AcuI	CTGAAG	1 cut(s)	1053
AcyI	GRCGYC	2 cut(s)	48, 93
AfaI	GTAC	3 cut(s)	301, 688, 986
AfiI	CCNNNNNNNGG	5 cut(s)	103, 206, 615, 616, 1021
AgsI	TTSAA	6 cut(s)	253, 418, 659, 773, 916, 935
AhlI	ACTAGT	1 cut(s)	689
AluBI	AGCT	6 cut(s)	277, 349, 401, 683, 738, 1073
AluI	AGCT	6 cut(s)	277, 349, 401, 683, 738, 1073
AoxI	GGCC	1 cut(s)	1023
ApeKI	GCWGC	4 cut(s)	329, 598, 672, 699
ApoI	RAATTY	4 cut(s)	73, 116, 827, 916
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	5 cut(s)	135, 197, 568, 716, 896
AsuC2I	CCSGG	2 cut(s)	64, 105
AsuHPI	GGTGA	2 cut(s)	575, 658
AvaII	GGWCC	5 cut(s)	135, 197, 568, 716, 896
BalI	TGGCCA	1 cut(s)	1025
BanI	GGYRCC	1 cut(s)	47
BarI	GAAGNNNNNNTAC	2 cut(s)	360, 392
BbsI	GAAGAC	2 cut(s)	279, 495
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	4 cut(s)	316, 610, 659, 711
BccI	CCATC	2 cut(s)	610, 835
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BcnI	CCSGG	2 cut(s)	64, 105
BcuI	ACTAGT	1 cut(s)	689
BfaI	CTAG	4 cut(s)	587, 684, 690, 732
BfmI	CTRYAG	1 cut(s)	377
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	5 cut(s)	330, 599, 673, 700, 729
BlsI	GCNGC	5 cut(s)	331, 600, 674, 701, 730
BmcAI	AGTACT	2 cut(s)	301, 688
Bme1390I	CCNGG	2 cut(s)	64, 105
Bme18I	GGWCC	5 cut(s)	135, 197, 568, 716, 896
BmgT120I	GGNCC	5 cut(s)	135, 197, 568, 716, 896
BmiI	GGNNCC	4 cut(s)	49, 137, 199, 570
BmrFI	CCNGG	2 cut(s)	64, 105
BmrI	ACTGGG	1 cut(s)	312
BmsI	GCATC	2 cut(s)	194, 761
BmuI	ACTGGG	1 cut(s)	312
BpiI	GAAGAC	2 cut(s)	279, 495
BpmI	CTGGAG	1 cut(s)	699
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	318
BpuMI	CCSGG	2 cut(s)	64, 105
Bsa29I	ATCGAT	1 cut(s)	57
BsaHI	GRCGYC	2 cut(s)	48, 93
BsaJI	CCNNGG	2 cut(s)	315, 610
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	5 cut(s)	103, 206, 615, 616, 1021
Bse1I	ACTGG	2 cut(s)	307, 682
Bse3DI	GCAATG	1 cut(s)	371
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	315, 610
BseGI	GGATG	2 cut(s)	468, 931
BseLI	CCNNNNNNNGG	5 cut(s)	103, 206, 615, 616, 1021
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	5 cut(s)	305, 393, 501, 548, 753
BseNI	ACTGG	2 cut(s)	307, 682
BseRI	GAGGAG	2 cut(s)	332, 419
BseXI	GCAGC	4 cut(s)	316, 610, 659, 711
BseYI	CCCAGC	1 cut(s)	633
BsgI	GTGCAG	2 cut(s)	384, 658
BshFI	GGCC	1 cut(s)	1025
BshNI	GGYRCC	1 cut(s)	47
BshVI	ATCGAT	1 cut(s)	57
BsiSI	CCGG	5 cut(s)	45, 51, 64, 87, 104
BslFI	GGGAC	2 cut(s)	183, 554
BslI	CCNNNNNNNGG	5 cut(s)	103, 206, 615, 616, 1021
BsmFI	GGGAC	2 cut(s)	183, 554
BsnI	GGCC	1 cut(s)	1025
Bsp1407I	TGTACA	1 cut(s)	984
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	4 cut(s)	25, 207, 460, 728
BspANI	GGCC	1 cut(s)	1025
BspCNI	CTCAG	5 cut(s)	304, 394, 502, 549, 752
BspDI	ATCGAT	1 cut(s)	57
BspLI	GGNNCC	4 cut(s)	49, 137, 199, 570
BspT107I	GGYRCC	1 cut(s)	47
BsrBI	CCGCTC	1 cut(s)	460
BsrDI	GCAATG	1 cut(s)	371
BsrGI	TGTACA	1 cut(s)	984
BsrI	ACTGG	2 cut(s)	307, 682
BssECI	CCNNGG	2 cut(s)	315, 610
BssMI	GATC	1 cut(s)	237
BssNI	GRCGYC	2 cut(s)	48, 93
BssT1I	CCWWGG	1 cut(s)	610
Bst4CI	ACNGT	1 cut(s)	482
Bst6I	CTCTTC	1 cut(s)	429
BstACI	GRCGYC	2 cut(s)	48, 93
BstAPI	GCANNNNNTGC	1 cut(s)	792
BstAUI	TGTACA	1 cut(s)	984
BstC8I	GCNNGC	1 cut(s)	1062
BstDEI	CTNAG	6 cut(s)	291, 402, 510, 557, 739, 1074
BstEII	GGTNACC	1 cut(s)	646
BstF5I	GGATG	2 cut(s)	468, 931
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 792, 1070
BstNSI	RCATGY	1 cut(s)	179
BstPI	GGTNACC	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	62, 103
BstSFI	CTRYAG	1 cut(s)	377
BstV1I	GCAGC	4 cut(s)	316, 610, 659, 711
BstV2I	GAAGAC	2 cut(s)	279, 495
BstXI	CCANNNNNNTGG	1 cut(s)	1033
Bsu15I	ATCGAT	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	1025
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	468, 931
BtsI	GCAGTG	1 cut(s)	709
BtsIMutI	CAGTG	2 cut(s)	675, 709
Cac8I	GCNNGC	1 cut(s)	1062
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	5 cut(s)	135, 197, 568, 716, 896
ClaI	ATCGAT	1 cut(s)	57
CseI	GACGC	1 cut(s)	273
Csp6I	GTAC	3 cut(s)	300, 687, 985
CviAII	CATG	4 cut(s)	176, 472, 547, 781
CviQI	GTAC	3 cut(s)	300, 687, 985
DdeI	CTNAG	6 cut(s)	291, 402, 510, 557, 739, 1074
DinI	GGCGCC	1 cut(s)	49
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	1023
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	610
Eco47I	GGWCC	5 cut(s)	135, 197, 568, 716, 896
Eco57I	CTGAAG	1 cut(s)	1053
Eco91I	GGTNACC	1 cut(s)	646
EcoO109I	RGGNCCY	2 cut(s)	135, 568
EcoO65I	GGTNACC	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	916
EcoT14I	CCWWGG	1 cut(s)	610
EcoT22I	ATGCAT	1 cut(s)	782
EgeI	GGCGCC	1 cut(s)	49
EheI	GGCGCC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	4 cut(s)	179, 475, 550, 784
FaiI	YATR	8 cut(s)	149, 177, 473, 548, 746, 778, 782, 878
FaqI	GGGAC	2 cut(s)	183, 554
FatI	CATG	4 cut(s)	175, 471, 546, 780
FauI	CCCGC	1 cut(s)	32
Fnu4HI	GCNGC	5 cut(s)	330, 599, 673, 700, 729
FokI	GGATG	2 cut(s)	475, 938
Fsp4HI	GCNGC	5 cut(s)	330, 599, 673, 700, 729
FspBI	CTAG	4 cut(s)	587, 684, 690, 732
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	5 cut(s)	330, 599, 673, 700, 729
GsaI	CCCAGC	1 cut(s)	637
GsuI	CTGGAG	1 cut(s)	699
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	1025
HapII	CCGG	5 cut(s)	45, 51, 64, 87, 104
HgaI	GACGC	1 cut(s)	273
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	2 cut(s)	48, 93
Hin1II	CATG	4 cut(s)	179, 475, 550, 784
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	7 cut(s)	54, 311, 485, 512, 935, 956, 967
HpaII	CCGG	5 cut(s)	45, 51, 64, 87, 104
HphI	GGTGA	2 cut(s)	575, 658
Hpy166II	GTNNAC	2 cut(s)	97, 544
Hpy188I	TCNGA	6 cut(s)	274, 294, 316, 358, 511, 940
Hpy188III	TCNNGA	6 cut(s)	12, 241, 659, 804, 923, 1045
Hpy8I	GTNNAC	2 cut(s)	97, 544
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	8 cut(s)	71, 365, 598, 675, 780, 795, 870, 888
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 792, 1070
HpyF3I	CTNAG	6 cut(s)	291, 402, 510, 557, 739, 1074
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	2 cut(s)	48, 93
Hsp92II	CATG	4 cut(s)	179, 475, 550, 784
HspAI	GCGC	1 cut(s)	48
KasI	GGCGCC	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	2 cut(s)	274, 680
Lsp1109I	GCAGC	4 cut(s)	316, 610, 659, 711
LweI	GCATC	2 cut(s)	194, 761
MaeI	CTAG	4 cut(s)	587, 684, 690, 732
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	646, 760
MalI	GATC	1 cut(s)	239
MbiI	CCGCTC	1 cut(s)	460
MboI	GATC	1 cut(s)	237
MfeI	CAATTG	1 cut(s)	383
MlsI	TGGCCA	1 cut(s)	1025
MluCI	AATT	6 cut(s)	73, 116, 248, 383, 827, 916
MluNI	TGGCCA	1 cut(s)	1025
Mly113I	GGCGCC	1 cut(s)	48
MlyI	GAGTC	2 cut(s)	521, 950
MmeI	TCCRAC	3 cut(s)	252, 288, 801
Mox20I	TGGCCA	1 cut(s)	1025
Mph1103I	ATGCAT	1 cut(s)	782
MscI	TGGCCA	1 cut(s)	1025
MseI	TTAA	3 cut(s)	261, 450, 1031
MslI	CAYNNNNRTG	1 cut(s)	992
Msp20I	TGGCCA	1 cut(s)	1025
MspI	CCGG	5 cut(s)	45, 51, 64, 87, 104
MspR9I	CCNGG	2 cut(s)	64, 105
MunI	CAATTG	1 cut(s)	383
MwoI	GCNNNNNNNGC	3 cut(s)	45, 792, 1070
NarI	GGCGCC	1 cut(s)	48
NciI	CCSGG	2 cut(s)	64, 105
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	4 cut(s)	179, 475, 550, 784
NlaIV	GGNNCC	4 cut(s)	49, 137, 199, 570
NmeAIII	GCCGAG	1 cut(s)	663
NmuCI	GTSAC	2 cut(s)	646, 760
NsiI	ATGCAT	1 cut(s)	782
NspI	RCATGY	1 cut(s)	179
PfeI	GAWTC	5 cut(s)	54, 311, 485, 935, 967
PkrI	GCNGC	5 cut(s)	331, 600, 674, 701, 730
PleI	GAGTC	2 cut(s)	520, 950
PluTI	GGCGCC	1 cut(s)	51
PpsI	GAGTC	2 cut(s)	520, 950
PpuMI	RGGWCCY	2 cut(s)	135, 568
Psp5II	RGGWCCY	2 cut(s)	135, 568
PspEI	GGTNACC	1 cut(s)	646
PspFI	CCCAGC	1 cut(s)	633
PspN4I	GGNNCC	4 cut(s)	49, 137, 199, 570
PspPI	GGNCC	5 cut(s)	135, 197, 568, 716, 896
PspPPI	RGGWCCY	2 cut(s)	135, 568
RsaI	GTAC	3 cut(s)	301, 688, 986
RsaNI	GTAC	3 cut(s)	300, 687, 985
RseI	CAYNNNNRTG	1 cut(s)	992
SaqAI	TTAA	3 cut(s)	261, 450, 1031
SatI	GCNGC	5 cut(s)	330, 599, 673, 700, 729
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	5 cut(s)	135, 197, 568, 716, 896
ScaI	AGTACT	2 cut(s)	301, 688
SchI	GAGTC	2 cut(s)	521, 950
ScrFI	CCNGG	2 cut(s)	64, 105
SfaNI	GCATC	2 cut(s)	194, 761
SfcI	CTRYAG	1 cut(s)	377
SfoI	GGCGCC	1 cut(s)	49
SinI	GGWCC	5 cut(s)	135, 197, 568, 716, 896
SmiMI	CAYNNNNRTG	1 cut(s)	992
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
SpeI	ACTAGT	1 cut(s)	689
Sse9I	AATT	6 cut(s)	73, 116, 248, 383, 827, 916
SsiI	CCGC	4 cut(s)	25, 207, 460, 728
SspDI	GGCGCC	1 cut(s)	47
SspMI	CTAG	4 cut(s)	587, 684, 690, 732
StyD4I	CCNGG	2 cut(s)	62, 103
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	1 cut(s)	482
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	4 cut(s)	57, 515, 605, 849
TasI	AATT	6 cut(s)	73, 116, 248, 383, 827, 916
TatI	WGTACW	3 cut(s)	299, 686, 984
TauI	GCSGC	1 cut(s)	731
TfiI	GAWTC	5 cut(s)	54, 311, 485, 935, 967
Tru1I	TTAA	3 cut(s)	261, 450, 1031
Tru9I	TTAA	3 cut(s)	261, 450, 1031
TscAI	CASTG	2 cut(s)	682, 709
TseFI	GTSAC	2 cut(s)	646, 760
TseI	GCWGC	4 cut(s)	329, 598, 672, 699
Tsp45I	GTSAC	2 cut(s)	646, 760
TspDTI	ATGAA	7 cut(s)	66, 129, 479, 486, 488, 495, 563
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	2 cut(s)	682, 709
VpaK11BI	GGWCC	5 cut(s)	135, 197, 568, 716, 896
XapI	RAATTY	4 cut(s)	73, 116, 827, 916
XceI	RCATGY	1 cut(s)	179
XspI	CTAG	4 cut(s)	587, 684, 690, 732
ZraI	GACGTC	1 cut(s)	94
ZrmI	AGTACT	2 cut(s)	301, 688
Zsp2I	ATGCAT	1 cut(s)	782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.