Rw0G011580

Squamosa promoter-binding-like protein 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00507
OG0005916
Physical Location & Seq
Reverse (-)
89421 .. 92409
2989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G011580.1

Sequence Viewer

Length: 1515 bp
ATGGAGCCTTGGAGTTTCGGTTCAGAAGGGAAAGGGTTTTTACTTGCTGATGAGATTGATATACCAATTGATGCATTTGCAAGGAGTACAAAAGCATTCCTAGAATGGGATAACAAAACTTGCTTTAATTTCGATAAAGAATCAGTTGAGAGCATGGAGTTCATGGATTTGGGATTGCCTGATACAGTGAGGGAGCCTTGTCATGGTAACCAAGTAGTGGATGTCTTGAGTGGTGTCGCTGGTGTGGGCTGTAATGATTCTAGTAACAATACCGTAGCTTCTCCTACTTGTTTGATGACTTCAAGTTCATCTTGGGGTGAAGGAGAATCTGGCTCCAAATTTTCGAGTCCAGTCTATGAGTCTAGTAGCCAGGATTCATCACTTATTGCTTTGAAGCTAGGGAGGTTGGCTGATAGCAAATATGGACAGGATAGTCAACATCTGAAAGAGAGGTCAAAGAGAGCTCGCACAAAGGGTCCACATTATCAGACTCTCACCTGCCAAGTTCATGGTTGTAACATGGATCTTAGCTCTTCAAAGGAGTACCATAAGAGGCATAGAGTTTGTGATGCTCACTCAAAGACTGCAATAGTTATCGTTAATGGCATTGAACAGAGGTTTTGTCAACAATGTAGCAGGTTTCATCTGCTGGCTGAATTCGATGATGTTAAGCGCAGTTGTCGTAGACGCTTAGCTGGCCACAATCAACGCCGCAGGAAGCCTCAACTAGATACTTTTGATTGTAAATCGCGTAAGTGGCTTCAGTCATATCAAGGCATTGGATATCTTGGAACTTCCTTGCCAAAGAGAACACCGTTTGTCTTTTCAGATATACTTCCAGGTGGCATTCTATATCCAGAAGAATCTAACGAGTATGGACATATTAAAACTGAAGATGAATCAACTTACAGTCAATGTGTGACACCCATAACAAACAGGCCATTACCTCCAAACTCTTTCCTCCAACTGCATGGCCTCGGGAAGCAACATGCTTCAGAAGTTCCTTCGTCAGGAAGTGAATTCTCGGTTTTTGATAGTGCATCACATGTCCAGAAAGCATCTGGGGCGTCAACCTACCAGGGTGCTCTCTCTCTTCTGTCAGCTCAATCACAGAGCTCAATCCATTCAGCAAGAAATCAAGTGGCTACCCCTCTGCAAATACAGAGAACCCATCATGGTGCTGGTCAAATTAATGAACGGCCTTCCACAGTAAAAGCCTTGGAAAAATATGGACGAAACAGGTCCTTCCCATGCAGGATAAACTCCATGGGAACTGACCAGATGGACTCAGTAATGATATCTGATTCTAGTCATGCCGTTGACTTCCAACTTCACACAGATAGGGTTTTCCAGGAGTCAGCTCGCTTCAGTCACAAGTATCATCTTTCTCCTGAAAATGGACCAACTTTTGATTTGCTCCAATTGTCTTCACATTTTCAAAGAGTGGAGCAAGAGAGAAACTTTTTGCAAGTCAAACATGAGCAGGGGGATTTCTACTGTTTCCCGCAATCTTAA

Protein Analysis

504

Amino Acids

56.37

Weight (kDa)

6.89

Isoelectric Point (pI)

56.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 167 - 240 8.6e-32 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 506
AasI GACNNNNNNGTC 1 cut(s) 432
Acc36I ACCTGC 2 cut(s) 506, 627
AccB7I CCANNNNNTGG 1 cut(s) 217
AccI GTMKAC 1 cut(s) 685
AccII CGCG 1 cut(s) 751
AciI CCGC 2 cut(s) 712, 1505
AclWI GGATC 1 cut(s) 531
AcoI YGGCCR 1 cut(s) 697
AcsI RAATTY 3 cut(s) 338, 656, 1019
AcuI CTGAAG 4 cut(s) 746, 912, 978, 1351
AcyI GRCGYC 1 cut(s) 1067
AfaI GTAC 2 cut(s) 88, 545
AfiI CCNNNNNNNGG 5 cut(s) 106, 203, 217, 1010, 1397
AflIII ACRYGT 1 cut(s) 1045
AgsI TTSAA 5 cut(s) 303, 394, 537, 611, 1439
AjnI CCWGG 4 cut(s) 369, 838, 1077, 1350
AloI GAACNNNNNNTCC 1 cut(s) 36
AluBI AGCT 8 cut(s) 278, 397, 464, 531, 695, 1103, 1116, 1361
AluI AGCT 8 cut(s) 278, 397, 464, 531, 695, 1103, 1116, 1361
Alw21I GWGCWC 3 cut(s) 466, 1087, 1118
AlwI GGATC 1 cut(s) 531
Ama87I CYCGRG 1 cut(s) 977
AoxI GGCC 4 cut(s) 697, 938, 973, 1199
ApoI RAATTY 3 cut(s) 338, 656, 1019
AseI ATTAAT 1 cut(s) 1191
AspLEI GCGC 1 cut(s) 675
AspS9I GGNCC 3 cut(s) 476, 1242, 1400
AsuHPI GGTGA 2 cut(s) 329, 487
AvaI CYCGRG 1 cut(s) 977
AvaII GGWCC 3 cut(s) 476, 1242, 1400
BalI TGGCCA 1 cut(s) 699
BanII GRGCYC 2 cut(s) 466, 1118
BbsI GAAGAC 1 cut(s) 1419
Bbv12I GWGCWC 3 cut(s) 466, 1087, 1118
BccI CCATC 2 cut(s) 1179, 1276
BceAI ACGGC 2 cut(s) 1214, 1301
BciT130I CCWGG 4 cut(s) 371, 840, 1079, 1352
BfaI CTAG 6 cut(s) 101, 261, 363, 398, 728, 1308
BfuAI ACCTGC 2 cut(s) 506, 627
BisI GCNGC 1 cut(s) 712
BlpI GCTNAGC 1 cut(s) 691
BlsI GCNGC 1 cut(s) 713
Bme1390I CCNGG 4 cut(s) 371, 840, 1079, 1352
Bme18I GGWCC 3 cut(s) 476, 1242, 1400
BmeT110I CYCGRG 1 cut(s) 977
BmgT120I GGNCC 3 cut(s) 476, 1242, 1400
BmiI GGNNCC 4 cut(s) 6, 195, 334, 477
BmrFI CCNGG 4 cut(s) 371, 840, 1079, 1352
BmsI GCATC 4 cut(s) 61, 559, 1049, 1067
BpiI GAAGAC 1 cut(s) 1419
Bpu1102I GCTNAGC 1 cut(s) 691
BpuEI CTTGAG 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 1067
BsaJI CCNNGG 5 cut(s) 8, 976, 1078, 1218, 1266
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 5 cut(s) 106, 203, 217, 1010, 1397
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 4 cut(s) 371, 840, 1079, 1352
BseDI CCNNGG 5 cut(s) 8, 976, 1078, 1218, 1266
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 5 cut(s) 106, 203, 217, 1010, 1397
BseMII CTCAG 1 cut(s) 1302
BseNI ACTGG 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 751
BshFI GGCC 4 cut(s) 699, 940, 975, 1201
BsiHKAI GWGCWC 3 cut(s) 466, 1087, 1118
BsiHKCI CYCGRG 1 cut(s) 977
BslI CCNNNNNNNGG 5 cut(s) 106, 203, 217, 1010, 1397
BsmI GAATGC 2 cut(s) 95, 846
BsnI GGCC 4 cut(s) 699, 940, 975, 1201
BsoBI CYCGRG 1 cut(s) 977
Bsp1286I GDGCHC 3 cut(s) 466, 1087, 1118
Bsp143I GATC 1 cut(s) 523
Bsp1720I GCTNAGC 1 cut(s) 691
Bsp19I CCATGG 1 cut(s) 1266
BspACI CCGC 2 cut(s) 712, 1505
BspANI GGCC 4 cut(s) 699, 940, 975, 1201
BspCNI CTCAG 1 cut(s) 1301
BspFNI CGCG 1 cut(s) 751
BspLI GGNNCC 4 cut(s) 6, 195, 334, 477
BspMI ACCTGC 2 cut(s) 506, 627
BspPI GGATC 1 cut(s) 531
BspQI GCTCTTC 1 cut(s) 538
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 5 cut(s) 8, 976, 1078, 1218, 1266
BssMI GATC 1 cut(s) 523
BssNI GRCGYC 1 cut(s) 1067
BssT1I CCWWGG 3 cut(s) 8, 1218, 1266
Bst2UI CCWGG 4 cut(s) 371, 840, 1079, 1352
Bst4CI ACNGT 6 cut(s) 187, 274, 816, 911, 1210, 1499
Bst6I CTCTTC 2 cut(s) 538, 1098
BstACI GRCGYC 1 cut(s) 1067
BstC8I GCNNGC 4 cut(s) 466, 651, 697, 1363
BstDEI CTNAG 3 cut(s) 527, 691, 1288
BstDSI CCRYGG 1 cut(s) 1266
BstEII GGTNACC 1 cut(s) 206
BstENI CCTNNNNNAGG 1 cut(s) 1008
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 751
BstHHI GCGC 1 cut(s) 675
BstKTI GATC 1 cut(s) 526
BstMBI GATC 1 cut(s) 523
BstMWI GCNNNNNNNGC 3 cut(s) 696, 757, 1064
BstNI CCWGG 4 cut(s) 371, 840, 1079, 1352
BstNSI RCATGY 2 cut(s) 992, 1049
BstPI GGTNACC 1 cut(s) 206
BstSCI CCNGG 4 cut(s) 369, 838, 1077, 1350
BstUI CGCG 1 cut(s) 751
BstV2I GAAGAC 1 cut(s) 1419
BstX2I RGATCY 1 cut(s) 523
BstXI CCANNNNNNTGG 2 cut(s) 509, 971
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 4 cut(s) 699, 940, 975, 1201
BtgI CCRYGG 1 cut(s) 1266
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 192
BveI ACCTGC 2 cut(s) 506, 627
Cac8I GCNNGC 4 cut(s) 466, 651, 697, 1363
CfoI GCGC 1 cut(s) 675
Cfr13I GGNCC 3 cut(s) 476, 1242, 1400
CseI GACGC 2 cut(s) 696, 1056
Csp6I GTAC 2 cut(s) 87, 544
CviQI GTAC 2 cut(s) 87, 544
DdeI CTNAG 3 cut(s) 527, 691, 1288
DpnI GATC 1 cut(s) 525
DpnII GATC 1 cut(s) 523
DrdI GACNNNNNNGTC 1 cut(s) 432
DseDI GACNNNNNNGTC 1 cut(s) 432
EaeI YGGCCR 1 cut(s) 697
Eam1104I CTCTTC 2 cut(s) 538, 1098
EarI CTCTTC 2 cut(s) 538, 1098
Ecl136II GAGCTC 2 cut(s) 464, 1116
Eco130I CCWWGG 3 cut(s) 8, 1218, 1266
Eco24I GRGCYC 2 cut(s) 466, 1118
Eco32I GATATC 2 cut(s) 785, 1299
Eco47I GGWCC 3 cut(s) 476, 1242, 1400
Eco53kI GAGCTC 2 cut(s) 464, 1116
Eco57I CTGAAG 4 cut(s) 746, 912, 978, 1351
Eco88I CYCGRG 1 cut(s) 977
Eco91I GGTNACC 1 cut(s) 206
EcoICRI GAGCTC 2 cut(s) 464, 1116
EcoNI CCTNNNNNAGG 1 cut(s) 1008
EcoO109I RGGNCCY 1 cut(s) 1242
EcoO65I GGTNACC 1 cut(s) 206
EcoRI GAATTC 2 cut(s) 656, 1019
EcoRII CCWGG 4 cut(s) 369, 838, 1077, 1350
EcoRV GATATC 2 cut(s) 785, 1299
EcoT14I CCWWGG 3 cut(s) 8, 1218, 1266
EcoT22I ATGCAT 1 cut(s) 76
EcoT38I GRGCYC 2 cut(s) 466, 1118
ErhI CCWWGG 3 cut(s) 8, 1218, 1266
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FauI CCCGC 1 cut(s) 1512
FblI GTMKAC 1 cut(s) 685
Fnu4HI GCNGC 1 cut(s) 712
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 2 cut(s) 466, 1118
Fsp4HI GCNGC 1 cut(s) 712
FspBI CTAG 6 cut(s) 101, 261, 363, 398, 728, 1308
GlaI GCGC 1 cut(s) 674
GluI GCNGC 1 cut(s) 712
HaeIII GGCC 4 cut(s) 699, 940, 975, 1201
HgaI GACGC 2 cut(s) 696, 1056
HhaI GCGC 1 cut(s) 675
Hin1I GRCGYC 1 cut(s) 1067
Hin6I GCGC 1 cut(s) 673
HinP1I GCGC 1 cut(s) 673
HincII GTYRAC 4 cut(s) 437, 626, 1071, 1321
HindII GTYRAC 4 cut(s) 437, 626, 1071, 1321
HphI GGTGA 2 cut(s) 329, 487
Hpy166II GTNNAC 6 cut(s) 437, 479, 626, 686, 1071, 1321
Hpy188I TCNGA 6 cut(s) 25, 444, 489, 829, 997, 1303
Hpy188III TCNNGA 6 cut(s) 226, 857, 979, 1011, 1051, 1391
Hpy8I GTNNAC 6 cut(s) 437, 479, 626, 686, 1071, 1321
HpyAV CCTTC 5 cut(s) 20, 314, 1014, 1212, 1255
HpyCH4III ACNGT 6 cut(s) 187, 274, 816, 911, 1210, 1499
HpyCH4V TGCA 8 cut(s) 74, 80, 587, 970, 1040, 1156, 1254, 1468
HpyF10VI GCNNNNNNNGC 3 cut(s) 696, 757, 1064
HpyF3I CTNAG 3 cut(s) 527, 691, 1288
Hsp92I GRCGYC 1 cut(s) 1067
HspAI GCGC 1 cut(s) 673
Kzo9I GATC 1 cut(s) 523
LguI GCTCTTC 1 cut(s) 538
LmnI GCTCC 5 cut(s) 4, 193, 338, 1422, 1447
LweI GCATC 4 cut(s) 61, 559, 1049, 1067
MaeI CTAG 6 cut(s) 101, 261, 363, 398, 728, 1308
MaeIII GTNAC 5 cut(s) 206, 263, 515, 919, 1370
MalI GATC 1 cut(s) 525
MboI GATC 1 cut(s) 523
MboII GAAGA 5 cut(s) 525, 872, 905, 1085, 1419
MfeI CAATTG 2 cut(s) 66, 1421
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 3 cut(s) 466, 1087, 1118
MlsI TGGCCA 1 cut(s) 699
MluCI AATT 7 cut(s) 66, 127, 338, 656, 1019, 1188, 1421
MluNI TGGCCA 1 cut(s) 699
MlyI GAGTC 5 cut(s) 355, 368, 484, 1280, 1364
MmeI TCCRAC 2 cut(s) 988, 1351
Mox20I TGGCCA 1 cut(s) 699
Mph1103I ATGCAT 1 cut(s) 76
MscI TGGCCA 1 cut(s) 699
MseI TTAA 6 cut(s) 126, 600, 669, 885, 1191, 1513
MslI CAYNNNNRTG 1 cut(s) 1176
Msp20I TGGCCA 1 cut(s) 699
MspR9I CCNGG 4 cut(s) 371, 840, 1079, 1352
MunI CAATTG 2 cut(s) 66, 1421
Mva1269I GAATGC 2 cut(s) 95, 846
MvaI CCWGG 4 cut(s) 371, 840, 1079, 1352
MvnI CGCG 1 cut(s) 751
MwoI GCNNNNNNNGC 3 cut(s) 696, 757, 1064
NcoI CCATGG 1 cut(s) 1266
NdeII GATC 1 cut(s) 523
NlaIV GGNNCC 4 cut(s) 6, 195, 334, 477
NmuCI GTSAC 2 cut(s) 919, 1370
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 2 cut(s) 992, 1049
PaqCI CACCTGC 1 cut(s) 506
PciI ACATGT 1 cut(s) 1045
PciSI GCTCTTC 1 cut(s) 538
PctI GAATGC 2 cut(s) 95, 846
PfeI GAWTC 7 cut(s) 140, 257, 326, 374, 863, 899, 1304
PflMI CCANNNNNTGG 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 1350
PkrI GCNGC 1 cut(s) 713
PleI GAGTC 5 cut(s) 354, 367, 484, 1280, 1363
PpsI GAGTC 5 cut(s) 354, 367, 484, 1280, 1363
PpuMI RGGWCCY 1 cut(s) 1242
PscI ACATGT 1 cut(s) 1045
PshBI ATTAAT 1 cut(s) 1191
Psp124BI GAGCTC 2 cut(s) 466, 1118
Psp5II RGGWCCY 1 cut(s) 1242
Psp6I CCWGG 4 cut(s) 369, 838, 1077, 1350
PspEI GGTNACC 1 cut(s) 206
PspGI CCWGG 4 cut(s) 369, 838, 1077, 1350
PspN4I GGNNCC 4 cut(s) 6, 195, 334, 477
PspPI GGNCC 3 cut(s) 476, 1242, 1400
PspPPI RGGWCCY 1 cut(s) 1242
PsuI RGATCY 1 cut(s) 523
RsaI GTAC 2 cut(s) 88, 545
RsaNI GTAC 2 cut(s) 87, 544
RseI CAYNNNNRTG 1 cut(s) 1176
SacI GAGCTC 2 cut(s) 466, 1118
SapI GCTCTTC 1 cut(s) 538
SaqAI TTAA 6 cut(s) 126, 600, 669, 885, 1191, 1513
SatI GCNGC 1 cut(s) 712
Sau3AI GATC 1 cut(s) 523
Sau96I GGNCC 3 cut(s) 476, 1242, 1400
SchI GAGTC 5 cut(s) 355, 368, 484, 1280, 1364
ScrFI CCNGG 4 cut(s) 371, 840, 1079, 1352
SduI GDGCHC 3 cut(s) 466, 1087, 1118
SfaNI GCATC 4 cut(s) 61, 559, 1049, 1067
SinI GGWCC 3 cut(s) 476, 1242, 1400
SmiMI CAYNNNNRTG 1 cut(s) 1176
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 7 cut(s) 66, 127, 338, 656, 1019, 1188, 1421
SsiI CCGC 2 cut(s) 712, 1505
SspMI CTAG 6 cut(s) 101, 261, 363, 398, 728, 1308
SstI GAGCTC 2 cut(s) 466, 1118
StyD4I CCNGG 4 cut(s) 369, 838, 1077, 1350
StyI CCWWGG 3 cut(s) 8, 1218, 1266
TaaI ACNGT 6 cut(s) 187, 274, 816, 911, 1210, 1499
TaqI TCGA 3 cut(s) 132, 344, 660
TasI AATT 7 cut(s) 66, 127, 338, 656, 1019, 1188, 1421
TatI WGTACW 1 cut(s) 86
TauI GCSGC 1 cut(s) 714
TfiI GAWTC 7 cut(s) 140, 257, 326, 374, 863, 899, 1304
Tru1I TTAA 6 cut(s) 126, 600, 669, 885, 1191, 1513
Tru9I TTAA 6 cut(s) 126, 600, 669, 885, 1191, 1513
TscAI CASTG 1 cut(s) 192
TseFI GTSAC 2 cut(s) 919, 1370
Tsp45I GTSAC 2 cut(s) 919, 1370
TspDTI ATGAA 7 cut(s) 151, 297, 366, 497, 632, 912, 1209
TspRI CASTG 1 cut(s) 192
Van91I CCANNNNNTGG 1 cut(s) 217
VpaK11BI GGWCC 3 cut(s) 476, 1242, 1400
VspI ATTAAT 1 cut(s) 1191
XagI CCTNNNNNAGG 1 cut(s) 1008
XapI RAATTY 3 cut(s) 338, 656, 1019
XceI RCATGY 2 cut(s) 992, 1049
XcmI CCANNNNNNNNNTGG 2 cut(s) 1058, 1178
XmiI GTMKAC 1 cut(s) 685
XspI CTAG 6 cut(s) 101, 261, 363, 398, 728, 1308
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.