RLG00000006405

Squamosa promoter-binding-like protein 6

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
6827455 .. 6832650
5196 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006405

Sequence Viewer

Length: 1683 bp
ATGAAGGGTCTGTCTTTTTCCGTTGGGATATTTGGTTTGGTTCCCGAAAAAACGAGCAAGAGAGAATTGGGCATTTCTGTATTAGTGTCACTGCATAATTCCTGTGACTTTTTGGTTCTGTGTTACATACTCATGGAGCCTTGGAGTTTCGGTTCAGAAGGGAAAGGGTTTTTACTTGCTGATGAGATGGATATACCAATTGATGCATTTGCAAGGAGTACAAAAGCATTCCTAGAATGGGATAACAAAACTTGCTTTAATTTCGATAAAGAATCAGTTGAGAGCATGGAGTTCATGGATTTGGGATTGCCTGATACAGTGAGGGAGCCTTGTCATGGTAACCAAGTAGTGGATGTCTTGAGTGGTGTCGCTGGTGTGGGCTGTAATGATTCTAGTAACAATACCGTAGCTTCTCCTACTTGTTTGATGACTTCAAGTTCATCTTGGGGTGAAGGAGAATCTGGCTCCAAATTTTCGAGTCCAGTCTGTGAGTCTAGTAGCCAGGATTCATCACTTATTGCTTTGAAGCTAGGGAGGTTGGTTGATAGCAAATATGGACAGGATAGTCAACATCTGAAAGAGAGGTCAAAGAGAGCTCGCACAAAGGGTCCACACTATCAGACTCTCACCTGCCAAGTTCATGGTTGTAACATGGATCTTAGCTCTTCAAAGGAGTACCATAAGAGGCATAGAGTTTGTGATGCTCACTCAAAGACTGCAATAGTTATCGTTAATGGCATTGAACAGAGGTTTTGTCAACAATGTAGCAGGTTTCATCTGCTGGCTGAATTCGATGATGTTAAGCGCAGTTGTCGTAGACGCTTAGCTGGCCACAATCAACGCCGCAGGAAGCCTCAACTAGATAGTTTTGATTGTAAATCGCGTAAGTGGCTTCAGTCATATCAAGGCATTGGATATCTTGGAACTTCCTTGCCAAAGAGAACACCGTTTGTCTTTTCAGATATACTTCCAGCTGGCATTCTATATCCAGAAGAATCTAACGAGTATGGACATATTAAAACTGAAGATGAATCAACTTACAGTCAATGTGTGACACCCATAGCAAACAGGCCATTACCTCCAAACTCTTTCCTCCAACTGCATGGCCTCGGGAAGCAACATGCTTCAGAATTTCCTTTGTCAGGAAGTGAATTCTCGGTTTTTGATACTGCATCACATGTCCAGAAAGCATCTGGGGCATCAACCTACCAGGGTGCTCTCTCTCTTCTGTCAGCTCAATCACAGAGCTCAATCCATTCAGCAAGAAATCAAGTGGCTACCCCTCTGCAAATACAGAGAACCAATCATGGTGCTGGTCAAATTAATGAACGGCCTTCCACAGTAAAAGCCTTGGAAAAATATGGACGAAACAGGTCCTTCCCATGCAGGATAAACTCCATGGGAACTGACCAGATGGACTCAGTAATGATTTCTGATTCTAGTCATGCTGTTGACTTCCAACTTCACACAGATAGGGTTTTCCAGGAGTCAGCTCGCTTCAGTCACAAGTATCATCTTTCTCCTGAAAATGGACCAACTTTTGATTTGCTCCAATTGTCTTCACATTTTCAAAGACATTCAAGTGACAATCTTGTTGGAGGCAGTTTGGATTGGCTTCATCAGGGAAAGTCTAACTACATTGGTGCATTTCAGAGGCTGGTAGAAAACTTTTCTTTTCCGTAG

Protein Analysis

561

Amino Acids

62.28

Weight (kDa)

7.31

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 211 - 284 1e-31 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 638
AasI GACNNNNNNGTC 1 cut(s) 564
Acc36I ACCTGC 2 cut(s) 638, 759
AccB7I CCANNNNNTGG 1 cut(s) 349
AccI GTMKAC 1 cut(s) 817
AccII CGCG 1 cut(s) 883
AciI CCGC 1 cut(s) 844
AclWI GGATC 1 cut(s) 663
AcoI YGGCCR 1 cut(s) 829
AcsI RAATTY 4 cut(s) 470, 788, 1130, 1151
AcuI CTGAAG 4 cut(s) 878, 1044, 1110, 1483
AfaI GTAC 2 cut(s) 220, 677
AfiI CCNNNNNNNGG 5 cut(s) 238, 335, 349, 1142, 1529
AflIII ACRYGT 1 cut(s) 1177
AgsI TTSAA 6 cut(s) 435, 526, 669, 743, 1571, 1581
AjnI CCWGG 3 cut(s) 501, 1209, 1482
AloI GAACNNNNNNTCC 2 cut(s) 136, 168
AluBI AGCT 9 cut(s) 410, 529, 596, 663, 827, 974, 1235, 1248, 1493
AluI AGCT 9 cut(s) 410, 529, 596, 663, 827, 974, 1235, 1248, 1493
Alw21I GWGCWC 3 cut(s) 598, 1219, 1250
AlwI GGATC 1 cut(s) 663
AlwNI CAGNNNCTG 1 cut(s) 1657
Ama87I CYCGRG 1 cut(s) 1109
AoxI GGCC 4 cut(s) 829, 1070, 1105, 1331
ApoI RAATTY 4 cut(s) 470, 788, 1130, 1151
AseI ATTAAT 1 cut(s) 1323
AspLEI GCGC 1 cut(s) 807
AspS9I GGNCC 3 cut(s) 608, 1374, 1532
AsuHPI GGTGA 2 cut(s) 461, 619
AvaI CYCGRG 1 cut(s) 1109
AvaII GGWCC 3 cut(s) 608, 1374, 1532
BalI TGGCCA 1 cut(s) 831
BanII GRGCYC 2 cut(s) 598, 1250
BbsI GAAGAC 1 cut(s) 1551
Bbv12I GWGCWC 3 cut(s) 598, 1219, 1250
BccI CCATC 2 cut(s) 181, 1408
BceAI ACGGC 1 cut(s) 1346
BciT130I CCWGG 3 cut(s) 503, 1211, 1484
BfaI CTAG 6 cut(s) 233, 393, 495, 530, 860, 1440
BfuAI ACCTGC 2 cut(s) 638, 759
BisI GCNGC 1 cut(s) 844
BlpI GCTNAGC 1 cut(s) 823
BlsI GCNGC 1 cut(s) 845
Bme1390I CCNGG 3 cut(s) 503, 1211, 1484
Bme18I GGWCC 3 cut(s) 608, 1374, 1532
BmeT110I CYCGRG 1 cut(s) 1109
BmgT120I GGNCC 3 cut(s) 608, 1374, 1532
BmiI GGNNCC 5 cut(s) 42, 138, 327, 466, 609
BmrFI CCNGG 3 cut(s) 503, 1211, 1484
BmsI GCATC 5 cut(s) 193, 691, 1181, 1199, 1208
BpiI GAAGAC 1 cut(s) 1551
Bpu1102I GCTNAGC 1 cut(s) 823
BpuEI CTTGAG 1 cut(s) 379
BsaJI CCNNGG 5 cut(s) 140, 1108, 1210, 1350, 1398
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 5 cut(s) 238, 335, 349, 1142, 1529
Bse1I ACTGG 1 cut(s) 482
BseBI CCWGG 3 cut(s) 503, 1211, 1484
BseDI CCNNGG 5 cut(s) 140, 1108, 1210, 1350, 1398
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 5 cut(s) 238, 335, 349, 1142, 1529
BseMII CTCAG 1 cut(s) 1434
BseNI ACTGG 1 cut(s) 482
Bsh1236I CGCG 1 cut(s) 883
BshFI GGCC 4 cut(s) 831, 1072, 1107, 1333
BsiHKAI GWGCWC 3 cut(s) 598, 1219, 1250
BsiHKCI CYCGRG 1 cut(s) 1109
BslI CCNNNNNNNGG 5 cut(s) 238, 335, 349, 1142, 1529
BsmI GAATGC 2 cut(s) 227, 978
BsnI GGCC 4 cut(s) 831, 1072, 1107, 1333
BsoBI CYCGRG 1 cut(s) 1109
Bsp1286I GDGCHC 3 cut(s) 598, 1219, 1250
Bsp143I GATC 1 cut(s) 655
Bsp1720I GCTNAGC 1 cut(s) 823
Bsp19I CCATGG 1 cut(s) 1398
BspACI CCGC 1 cut(s) 844
BspANI GGCC 4 cut(s) 831, 1072, 1107, 1333
BspCNI CTCAG 1 cut(s) 1433
BspFNI CGCG 1 cut(s) 883
BspLI GGNNCC 5 cut(s) 42, 138, 327, 466, 609
BspMI ACCTGC 2 cut(s) 638, 759
BspPI GGATC 1 cut(s) 663
BspQI GCTCTTC 1 cut(s) 670
BsrI ACTGG 1 cut(s) 482
BssECI CCNNGG 5 cut(s) 140, 1108, 1210, 1350, 1398
BssMI GATC 1 cut(s) 655
BssT1I CCWWGG 3 cut(s) 140, 1350, 1398
Bst2UI CCWGG 3 cut(s) 503, 1211, 1484
Bst4CI ACNGT 5 cut(s) 319, 406, 948, 1043, 1342
Bst6I CTCTTC 2 cut(s) 670, 1230
BstC8I GCNNGC 5 cut(s) 598, 783, 829, 976, 1495
BstDEI CTNAG 3 cut(s) 659, 823, 1420
BstDSI CCRYGG 1 cut(s) 1398
BstEII GGTNACC 1 cut(s) 338
BstENI CCTNNNNNAGG 1 cut(s) 1140
BstF5I GGATG 1 cut(s) 358
BstFNI CGCG 1 cut(s) 883
BstHHI GCGC 1 cut(s) 807
BstKTI GATC 1 cut(s) 658
BstMBI GATC 1 cut(s) 655
BstMWI GCNNNNNNNGC 3 cut(s) 828, 889, 1196
BstNI CCWGG 3 cut(s) 503, 1211, 1484
BstNSI RCATGY 2 cut(s) 1124, 1181
BstPI GGTNACC 1 cut(s) 338
BstSCI CCNGG 3 cut(s) 501, 1209, 1482
BstUI CGCG 1 cut(s) 883
BstV2I GAAGAC 1 cut(s) 1551
BstX2I RGATCY 1 cut(s) 655
BstXI CCANNNNNNTGG 2 cut(s) 641, 1103
BstYI RGATCY 1 cut(s) 655
BsuRI GGCC 4 cut(s) 831, 1072, 1107, 1333
BtgI CCRYGG 1 cut(s) 1398
BtsCI GGATG 1 cut(s) 358
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 89, 324
BveI ACCTGC 2 cut(s) 638, 759
Cac8I GCNNGC 5 cut(s) 598, 783, 829, 976, 1495
CaiI CAGNNNCTG 1 cut(s) 1657
CfoI GCGC 1 cut(s) 807
Cfr13I GGNCC 3 cut(s) 608, 1374, 1532
CseI GACGC 1 cut(s) 828
Csp6I GTAC 2 cut(s) 219, 676
CviQI GTAC 2 cut(s) 219, 676
DdeI CTNAG 3 cut(s) 659, 823, 1420
DpnI GATC 1 cut(s) 657
DpnII GATC 1 cut(s) 655
DrdI GACNNNNNNGTC 1 cut(s) 564
DseDI GACNNNNNNGTC 1 cut(s) 564
EaeI YGGCCR 1 cut(s) 829
Eam1104I CTCTTC 2 cut(s) 670, 1230
EarI CTCTTC 2 cut(s) 670, 1230
Ecl136II GAGCTC 2 cut(s) 596, 1248
Eco130I CCWWGG 3 cut(s) 140, 1350, 1398
Eco24I GRGCYC 2 cut(s) 598, 1250
Eco32I GATATC 1 cut(s) 917
Eco47I GGWCC 3 cut(s) 608, 1374, 1532
Eco53kI GAGCTC 2 cut(s) 596, 1248
Eco57I CTGAAG 4 cut(s) 878, 1044, 1110, 1483
Eco88I CYCGRG 1 cut(s) 1109
Eco91I GGTNACC 1 cut(s) 338
EcoICRI GAGCTC 2 cut(s) 596, 1248
EcoNI CCTNNNNNAGG 1 cut(s) 1140
EcoO109I RGGNCCY 1 cut(s) 1374
EcoO65I GGTNACC 1 cut(s) 338
EcoRI GAATTC 2 cut(s) 788, 1151
EcoRII CCWGG 3 cut(s) 501, 1209, 1482
EcoRV GATATC 1 cut(s) 917
EcoT14I CCWWGG 3 cut(s) 140, 1350, 1398
EcoT22I ATGCAT 1 cut(s) 208
EcoT38I GRGCYC 2 cut(s) 598, 1250
ErhI CCWWGG 3 cut(s) 140, 1350, 1398
FalI AAGNNNNNCTT 2 cut(s) 427, 459
FblI GTMKAC 1 cut(s) 817
Fnu4HI GCNGC 1 cut(s) 844
FokI GGATG 1 cut(s) 365
FriOI GRGCYC 2 cut(s) 598, 1250
Fsp4HI GCNGC 1 cut(s) 844
FspBI CTAG 6 cut(s) 233, 393, 495, 530, 860, 1440
GlaI GCGC 1 cut(s) 806
GluI GCNGC 1 cut(s) 844
HaeIII GGCC 4 cut(s) 831, 1072, 1107, 1333
HgaI GACGC 1 cut(s) 828
HhaI GCGC 1 cut(s) 807
Hin6I GCGC 1 cut(s) 805
HinP1I GCGC 1 cut(s) 805
HincII GTYRAC 3 cut(s) 569, 758, 1453
HindII GTYRAC 3 cut(s) 569, 758, 1453
HphI GGTGA 2 cut(s) 461, 619
Hpy166II GTNNAC 5 cut(s) 569, 611, 758, 818, 1453
Hpy188I TCNGA 7 cut(s) 157, 576, 621, 961, 1129, 1435, 1653
Hpy188III TCNNGA 7 cut(s) 44, 358, 989, 1111, 1143, 1183, 1523
Hpy8I GTNNAC 5 cut(s) 569, 611, 758, 818, 1453
HpyAV CCTTC 4 cut(s) 152, 446, 1344, 1387
HpyCH4III ACNGT 5 cut(s) 319, 406, 948, 1043, 1342
HpyCH4V TGCA 9 cut(s) 94, 206, 212, 719, 1102, 1172, 1288, 1386, 1646
HpyF10VI GCNNNNNNNGC 3 cut(s) 828, 889, 1196
HpyF3I CTNAG 3 cut(s) 659, 823, 1420
HspAI GCGC 1 cut(s) 805
Kzo9I GATC 1 cut(s) 655
LguI GCTCTTC 1 cut(s) 670
LmnI GCTCC 4 cut(s) 136, 325, 470, 1554
LweI GCATC 5 cut(s) 193, 691, 1181, 1199, 1208
MaeI CTAG 6 cut(s) 233, 393, 495, 530, 860, 1440
MaeIII GTNAC 9 cut(s) 87, 104, 122, 338, 395, 647, 1051, 1502, 1583
MalI GATC 1 cut(s) 657
MboI GATC 1 cut(s) 655
MboII GAAGA 5 cut(s) 657, 1004, 1037, 1217, 1551
MfeI CAATTG 2 cut(s) 198, 1553
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 3 cut(s) 598, 1219, 1250
MlsI TGGCCA 1 cut(s) 831
MluNI TGGCCA 1 cut(s) 831
MlyI GAGTC 5 cut(s) 487, 500, 616, 1412, 1496
MmeI TCCRAC 3 cut(s) 1120, 1483, 1576
Mox20I TGGCCA 1 cut(s) 831
Mph1103I ATGCAT 1 cut(s) 208
MscI TGGCCA 1 cut(s) 831
MseI TTAA 5 cut(s) 258, 732, 801, 1017, 1323
MslI CAYNNNNRTG 2 cut(s) 131, 1581
Msp20I TGGCCA 1 cut(s) 831
MspA1I CMGCKG 1 cut(s) 974
MspR9I CCNGG 3 cut(s) 503, 1211, 1484
MunI CAATTG 2 cut(s) 198, 1553
Mva1269I GAATGC 2 cut(s) 227, 978
MvaI CCWGG 3 cut(s) 503, 1211, 1484
MvnI CGCG 1 cut(s) 883
MwoI GCNNNNNNNGC 3 cut(s) 828, 889, 1196
NcoI CCATGG 1 cut(s) 1398
NdeII GATC 1 cut(s) 655
NlaIV GGNNCC 5 cut(s) 42, 138, 327, 466, 609
NmuCI GTSAC 5 cut(s) 87, 104, 1051, 1502, 1583
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 2 cut(s) 1124, 1181
PaqCI CACCTGC 1 cut(s) 638
PciI ACATGT 1 cut(s) 1177
PciSI GCTCTTC 1 cut(s) 670
PctI GAATGC 2 cut(s) 227, 978
PfeI GAWTC 7 cut(s) 272, 389, 458, 506, 995, 1031, 1436
PflMI CCANNNNNTGG 1 cut(s) 349
PfoI TCCNGGA 1 cut(s) 1482
PkrI GCNGC 1 cut(s) 845
PleI GAGTC 5 cut(s) 486, 499, 616, 1412, 1495
PpsI GAGTC 5 cut(s) 486, 499, 616, 1412, 1495
PpuMI RGGWCCY 1 cut(s) 1374
PscI ACATGT 1 cut(s) 1177
PshBI ATTAAT 1 cut(s) 1323
Psp124BI GAGCTC 2 cut(s) 598, 1250
Psp5II RGGWCCY 1 cut(s) 1374
Psp6I CCWGG 3 cut(s) 501, 1209, 1482
PspEI GGTNACC 1 cut(s) 338
PspGI CCWGG 3 cut(s) 501, 1209, 1482
PspN4I GGNNCC 5 cut(s) 42, 138, 327, 466, 609
PspPI GGNCC 3 cut(s) 608, 1374, 1532
PspPPI RGGWCCY 1 cut(s) 1374
PstNI CAGNNNCTG 1 cut(s) 1657
PsuI RGATCY 1 cut(s) 655
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 2 cut(s) 220, 677
RsaNI GTAC 2 cut(s) 219, 676
RseI CAYNNNNRTG 2 cut(s) 131, 1581
SacI GAGCTC 2 cut(s) 598, 1250
SapI GCTCTTC 1 cut(s) 670
SaqAI TTAA 5 cut(s) 258, 732, 801, 1017, 1323
SatI GCNGC 1 cut(s) 844
Sau3AI GATC 1 cut(s) 655
Sau96I GGNCC 3 cut(s) 608, 1374, 1532
SchI GAGTC 5 cut(s) 487, 500, 616, 1412, 1496
ScrFI CCNGG 3 cut(s) 503, 1211, 1484
SduI GDGCHC 3 cut(s) 598, 1219, 1250
SfaNI GCATC 5 cut(s) 193, 691, 1181, 1199, 1208
SinI GGWCC 3 cut(s) 608, 1374, 1532
SmiMI CAYNNNNRTG 2 cut(s) 131, 1581
SmlI CTYRAG 1 cut(s) 358
SmoI CTYRAG 1 cut(s) 358
SsiI CCGC 1 cut(s) 844
SspMI CTAG 6 cut(s) 233, 393, 495, 530, 860, 1440
SstI GAGCTC 2 cut(s) 598, 1250
StyD4I CCNGG 3 cut(s) 501, 1209, 1482
StyI CCWWGG 3 cut(s) 140, 1350, 1398
TaaI ACNGT 5 cut(s) 319, 406, 948, 1043, 1342
TaqI TCGA 3 cut(s) 264, 476, 792
TatI WGTACW 1 cut(s) 218
TauI GCSGC 1 cut(s) 846
TfiI GAWTC 7 cut(s) 272, 389, 458, 506, 995, 1031, 1436
Tru1I TTAA 5 cut(s) 258, 732, 801, 1017, 1323
Tru9I TTAA 5 cut(s) 258, 732, 801, 1017, 1323
TscAI CASTG 2 cut(s) 96, 324
TseFI GTSAC 5 cut(s) 87, 104, 1051, 1502, 1583
Tsp45I GTSAC 5 cut(s) 87, 104, 1051, 1502, 1583
TspDTI ATGAA 9 cut(s) 17, 283, 429, 498, 629, 764, 1044, 1341, 1607
TspGWI ACGGA 2 cut(s) 10, 1668
TspRI CASTG 2 cut(s) 96, 324
Van91I CCANNNNNTGG 1 cut(s) 349
VpaK11BI GGWCC 3 cut(s) 608, 1374, 1532
VspI ATTAAT 1 cut(s) 1323
XagI CCTNNNNNAGG 1 cut(s) 1140
XapI RAATTY 4 cut(s) 470, 788, 1130, 1151
XceI RCATGY 2 cut(s) 1124, 1181
XcmI CCANNNNNNNNNTGG 1 cut(s) 1190
XmiI GTMKAC 1 cut(s) 817
XspI CTAG 6 cut(s) 233, 393, 495, 530, 860, 1440
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.