Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007348

Physical Location & Seq

Genomic Coordinates Reverse (-)

30261881 .. 30264651

Gene Structure 2771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G312000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTCTCTCTTAAACCAGCTTTTCAACAGAGGCGTTTTTGGCACAAAGTGCAAAACATGTTTGAACTTGGCTATTTCACGCATGAAATTGCTGCAAAACAAGAGAGATGTGCAGCTCAAACACATGCGCAAGGAAATTGCGCAATTTTTGCAGGCTGGCCAAGAAGCAATAGCTCGAATTCGGGTGGAGCATGTTATACGAGAGCAAGACATATGGGCTGCGTATGAGATATTGGAGCTGTTCTGTGAATTTGTCCTTGCACGTGTTCCCATTATTGAAAGCCAGAGGGAGTGTCCACCAGAATTACGAGAAGCTATATCAAGTATAATTTTTGCTTCCCCAAGATGTTCAGAAGTTCCAGATTTATTGCAGATCAAGAATTTGTTTACAGCAAAATATGGAAAGGAATTTGTATCAGCTGCGTCTGAGCTTCGTCCTGATTCTGGGGTCAACCGAACTATAATTGAGAAGCTTTCAGTTAGTGCTCCATCTGGAGAGGCCAGGCTTAGGGTCTTGAAGGAAATTGCACAAGAGTACAATCTGAATTGGGATTCTTCTAATACTGAAGCAGAATTCAGTAAAACGCATGAGGATCTGCTGGGTGGATCCAAGCACGTAAGTGGTGGAGCAGCACCTTCTCAAGCTCCGGCAAAACAAGGCTCTTTTAGTTCTTCACCTTCTAATGGGGCACACTCTATTGTGGCTGCAGATATTAAACAAGAACCTAAGTACCTTCATGCTCCAAGACCTTTAAGGGAGACACACACATCATACACTAATGAGATTCAACCATCGATTAATGATGATAAAGCGGCAGCAGTTAGTGATACCAAAAGGGAGACAAGACCAAAATCATCTGAGATCCTGGAGAGAGCTCGAGCTGCCATTGCTTCTGCTGAGCGTGCATCTGCTGCTGCCCGTTCCGCTGCAGAGCTGGTTAAGTCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

317

Amino Acids

34.89

Weight (kDa)

8.73

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25420 AT1G25420 AT1G25420 AT1G25420
fragaria_vesca	FvH4_4g27290 FvH4_4g27290 FvH4_4g27290 FvH4_4g27290
malus_domestica	MD13G1040800.v1.1 MD16G1042100.v1.1
prunus_persica	Prupe.1G312000_v2.0.a1 Prupe.1G312000_v2.0.a1 Prupe.1G312000_v2.0.a1
pyrus_communis	pycom13g03520 pycom16g03640
rosa_chinensis	RchiOBHm_Chr4g0435061
rosa_laevigata	RLG00000006623
rosa_multiflora	Rmu_sc0000400.1_g000011
rosa_roxburghii	Rroxscaffold_5G00376270
rosa_rugosa	Rorug04G0282200
rosa_samantha	Rh4AG337600 Rh4BG345600 Rh4CG360300 Rh4DG340100
rosa_wichuraiana	Rw4G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	128, 141
AciI	CCGC	2 cut(s)	812, 924
AclWI	GGATC	4 cut(s)	600, 600, 613, 856
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	5 cut(s)	177, 248, 379, 407, 572
AcuI	CTGAAG	1 cut(s)	585
AcvI	CACGTG	1 cut(s)	263
AdeI	CACNNNGTG	1 cut(s)	48
AfaI	GTAC	2 cut(s)	536, 731
AfiI	CCNNNNNNNGG	3 cut(s)	443, 507, 683
AflIII	ACRYGT	2 cut(s)	56, 262
AgsI	TTSAA	5 cut(s)	25, 64, 278, 517, 788
AjnI	CCWGG	2 cut(s)	500, 864
AleI	CACNNNNGTG	1 cut(s)	618
Alw21I	GWGCWC	2 cut(s)	487, 877
Alw26I	GTCTC	3 cut(s)	9, 752, 833
AlwI	GGATC	4 cut(s)	600, 600, 613, 856
Ama87I	CYCGRG	1 cut(s)	876
AoxI	GGCC	2 cut(s)	157, 498
ApoI	RAATTY	5 cut(s)	177, 248, 379, 407, 572
AseI	ATTAAT	1 cut(s)	798
AspLEI	GCGC	2 cut(s)	129, 142
AsuHPI	GGTGA	1 cut(s)	666
AvaI	CYCGRG	1 cut(s)	876
BaeGI	GKGCMC	1 cut(s)	691
BaeI	ACNNNNGTAYC	2 cut(s)	713, 746
BalI	TGGCCA	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	877
BbrPI	CACGTG	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	487, 877
BccI	CCATC	2 cut(s)	496, 799
BciT130I	CCWGG	2 cut(s)	502, 866
BcoDI	GTCTC	3 cut(s)	9, 752, 833
BfmI	CTRYAG	2 cut(s)	705, 927
BlpI	GCTNAGC	1 cut(s)	897
Bme1390I	CCNGG	2 cut(s)	502, 866
BmeT110I	CYCGRG	1 cut(s)	876
BmiI	GGNNCC	1 cut(s)	607
BmrFI	CCNGG	2 cut(s)	502, 866
BmsI	GCATC	1 cut(s)	914
BpmI	CTGGAG	2 cut(s)	513, 887
Bpu10I	CCTNAGC	1 cut(s)	506
Bpu1102I	GCTNAGC	1 cut(s)	897
BpuEI	CTTGAG	1 cut(s)	624
Bsa29I	ATCGAT	1 cut(s)	794
BsaAI	YACGTR	2 cut(s)	263, 616
Bsc4I	CCNNNNNNNGG	3 cut(s)	443, 507, 683
Bse3DI	GCAATG	1 cut(s)	885
BseBI	CCWGG	2 cut(s)	502, 866
BseCI	ATCGAT	1 cut(s)	794
BseLI	CCNNNNNNNGG	3 cut(s)	443, 507, 683
BseMI	GCAATG	1 cut(s)	885
BseMII	CTCAG	3 cut(s)	417, 849, 888
BseSI	GKGCMC	1 cut(s)	691
BseYI	CCCAGC	1 cut(s)	598
BsgI	GTGCAG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	159, 500
BshVI	ATCGAT	1 cut(s)	794
BsiHKAI	GWGCWC	2 cut(s)	487, 877
BsiHKCI	CYCGRG	1 cut(s)	876
BsiSI	CCGG	1 cut(s)	647
BslI	CCNNNNNNNGG	3 cut(s)	443, 507, 683
BsmAI	GTCTC	3 cut(s)	9, 752, 833
BsnI	GGCC	2 cut(s)	159, 500
BsoBI	CYCGRG	1 cut(s)	876
Bsp1286I	GDGCHC	3 cut(s)	487, 691, 877
Bsp143I	GATC	4 cut(s)	372, 592, 605, 861
Bsp1720I	GCTNAGC	1 cut(s)	897
BspACI	CCGC	2 cut(s)	812, 924
BspANI	GGCC	2 cut(s)	159, 500
BspCNI	CTCAG	3 cut(s)	418, 850, 889
BspDI	ATCGAT	1 cut(s)	794
BspLI	GGNNCC	1 cut(s)	607
BspMAI	CTGCAG	2 cut(s)	709, 931
BspPI	GGATC	4 cut(s)	600, 600, 613, 856
BsrDI	GCAATG	1 cut(s)	885
BssMI	GATC	4 cut(s)	372, 592, 605, 861
Bst2UI	CCWGG	2 cut(s)	502, 866
BstAPI	GCANNNNNTGC	3 cut(s)	48, 148, 911
BstBAI	YACGTR	2 cut(s)	263, 616
BstC8I	GCNNGC	3 cut(s)	153, 157, 903
BstDEI	CTNAG	5 cut(s)	426, 506, 726, 858, 897
BstHHI	GCGC	2 cut(s)	129, 142
BstKTI	GATC	4 cut(s)	375, 595, 608, 864
BstMAI	GTCTC	3 cut(s)	9, 752, 833
BstMBI	GATC	4 cut(s)	372, 592, 605, 861
BstMWI	GCNNNNNNNGC	8 cut(s)	39, 48, 148, 881, 887, 902, 911, 923
BstNI	CCWGG	2 cut(s)	502, 866
BstNSI	RCATGY	3 cut(s)	60, 127, 194
BstSCI	CCNGG	2 cut(s)	500, 864
BstSFI	CTRYAG	2 cut(s)	705, 927
BstSLI	GKGCMC	1 cut(s)	691
BstX2I	RGATCY	3 cut(s)	592, 605, 861
BstYI	RGATCY	3 cut(s)	592, 605, 861
Bsu15I	ATCGAT	1 cut(s)	794
BsuRI	GGCC	2 cut(s)	159, 500
BsuTUI	ATCGAT	1 cut(s)	794
Cac8I	GCNNGC	3 cut(s)	153, 157, 903
CfoI	GCGC	2 cut(s)	129, 142
ClaI	ATCGAT	1 cut(s)	794
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	2 cut(s)	535, 730
CviAII	CATG	6 cut(s)	57, 82, 124, 191, 587, 737
CviQI	GTAC	2 cut(s)	535, 730
DdeI	CTNAG	5 cut(s)	426, 506, 726, 858, 897
DpnI	GATC	4 cut(s)	374, 594, 607, 863
DpnII	GATC	4 cut(s)	372, 592, 605, 861
DraIII	CACNNNGTG	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	875
Eco24I	GRGCYC	1 cut(s)	877
Eco53kI	GAGCTC	1 cut(s)	875
Eco57I	CTGAAG	1 cut(s)	585
Eco72I	CACGTG	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	876
EcoICRI	GAGCTC	1 cut(s)	875
EcoRI	GAATTC	2 cut(s)	177, 572
EcoRII	CCWGG	2 cut(s)	500, 864
EcoT38I	GRGCYC	1 cut(s)	877
FaeI	CATG	6 cut(s)	60, 85, 127, 194, 590, 740
FatI	CATG	6 cut(s)	56, 81, 123, 190, 586, 736
FauNDI	CATATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	877
FspI	TGCGCA	2 cut(s)	128, 141
GlaI	GCGC	2 cut(s)	128, 141
GsaI	CCCAGC	1 cut(s)	602
GsuI	CTGGAG	2 cut(s)	513, 887
HaeIII	GGCC	2 cut(s)	159, 500
HapII	CCGG	1 cut(s)	647
HgaI	GACGC	1 cut(s)	411
HhaI	GCGC	2 cut(s)	129, 142
Hin1II	CATG	6 cut(s)	60, 85, 127, 194, 590, 740
Hin6I	GCGC	2 cut(s)	127, 140
HinP1I	GCGC	2 cut(s)	127, 140
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	3 cut(s)	440, 551, 784
HpaII	CCGG	1 cut(s)	647
HphI	GGTGA	1 cut(s)	666
Hpy166II	GTNNAC	3 cut(s)	296, 387, 451
Hpy188I	TCNGA	4 cut(s)	352, 427, 543, 859
Hpy188III	TCNNGA	5 cut(s)	359, 376, 437, 492, 514
Hpy8I	GTNNAC	3 cut(s)	296, 387, 451
HpyAV	CCTTC	4 cut(s)	511, 645, 687, 743
HpyCH4IV	ACGT	2 cut(s)	262, 615
HpyF10VI	GCNNNNNNNGC	8 cut(s)	39, 48, 148, 881, 887, 902, 911, 923
HpyF3I	CTNAG	5 cut(s)	426, 506, 726, 858, 897
HpySE526I	ACGT	2 cut(s)	262, 615
Hsp92II	CATG	6 cut(s)	60, 85, 127, 194, 590, 740
HspAI	GCGC	2 cut(s)	127, 140
Kzo9I	GATC	4 cut(s)	372, 592, 605, 861
LmnI	GCTCC	6 cut(s)	187, 235, 490, 626, 649, 745
LweI	GCATC	1 cut(s)	914
MaeII	ACGT	2 cut(s)	262, 615
MalI	GATC	4 cut(s)	374, 594, 607, 863
MboI	GATC	4 cut(s)	372, 592, 605, 861
MboII	GAAGA	2 cut(s)	546, 663
MflI	RGATCY	3 cut(s)	592, 605, 861
MhlI	GDGCHC	3 cut(s)	487, 691, 877
MlsI	TGGCCA	1 cut(s)	159
MluNI	TGGCCA	1 cut(s)	159
MnlI	CCTC	4 cut(s)	23, 279, 490, 583
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	5 cut(s)	11, 714, 752, 798, 939
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	159
MspA1I	CMGCKG	2 cut(s)	419, 926
MspI	CCGG	1 cut(s)	647
MspR9I	CCNGG	2 cut(s)	502, 866
MvaI	CCWGG	2 cut(s)	502, 866
MwoI	GCNNNNNNNGC	8 cut(s)	39, 48, 148, 881, 887, 902, 911, 923
NdeI	CATATG	1 cut(s)	212
NdeII	GATC	4 cut(s)	372, 592, 605, 861
NlaIII	CATG	6 cut(s)	60, 85, 127, 194, 590, 740
NlaIV	GGNNCC	1 cut(s)	607
NsbI	TGCGCA	2 cut(s)	128, 141
NspI	RCATGY	3 cut(s)	60, 127, 194
OliI	CACNNNNGTG	1 cut(s)	618
PaeR7I	CTCGAG	1 cut(s)	876
PciI	ACATGT	1 cut(s)	56
PfeI	GAWTC	3 cut(s)	440, 551, 784
PfoI	TCCNGGA	1 cut(s)	864
PmaCI	CACGTG	1 cut(s)	263
PmlI	CACGTG	1 cut(s)	263
Ppu21I	YACGTR	2 cut(s)	263, 616
PscI	ACATGT	1 cut(s)	56
PshBI	ATTAAT	1 cut(s)	798
Psp124BI	GAGCTC	1 cut(s)	877
Psp6I	CCWGG	2 cut(s)	500, 864
PspCI	CACGTG	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	598
PspGI	CCWGG	2 cut(s)	500, 864
PspN4I	GGNNCC	1 cut(s)	607
PspXI	VCTCGAGB	1 cut(s)	876
PstI	CTGCAG	2 cut(s)	709, 931
PsuI	RGATCY	3 cut(s)	592, 605, 861
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	536, 731
RsaNI	GTAC	2 cut(s)	535, 730
RseI	CAYNNNNRTG	1 cut(s)	618
SacI	GAGCTC	1 cut(s)	877
SaqAI	TTAA	5 cut(s)	11, 714, 752, 798, 939
Sau3AI	GATC	4 cut(s)	372, 592, 605, 861
ScrFI	CCNGG	2 cut(s)	502, 866
SduI	GDGCHC	3 cut(s)	487, 691, 877
SfaNI	GCATC	1 cut(s)	914
SfcI	CTRYAG	2 cut(s)	705, 927
Sfr274I	CTCGAG	1 cut(s)	876
SlaI	CTCGAG	1 cut(s)	876
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	2 cut(s)	639, 876
SmoI	CTYRAG	2 cut(s)	639, 876
SsiI	CCGC	2 cut(s)	812, 924
SstI	GAGCTC	1 cut(s)	877
StyD4I	CCNGG	2 cut(s)	500, 864
TaiI	ACGT	2 cut(s)	265, 618
TaqI	TCGA	3 cut(s)	175, 794, 877
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	1 cut(s)	815
TfiI	GAWTC	3 cut(s)	440, 551, 784
Tru1I	TTAA	5 cut(s)	11, 714, 752, 798, 939
Tru9I	TTAA	5 cut(s)	11, 714, 752, 798, 939
TspDTI	ATGAA	2 cut(s)	98, 725
VspI	ATTAAT	1 cut(s)	798
XapI	RAATTY	5 cut(s)	177, 248, 379, 407, 572
XceI	RCATGY	3 cut(s)	60, 127, 194
XhoI	CTCGAG	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.