Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000400.1

Orthogroup ID

OG0007348

Physical Location & Seq

Genomic Coordinates Reverse (-)

64700 .. 67185

Gene Structure 2486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000400.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgtctctcttgaaccagctcttcaacagaggagttttcggcacaaaatgcaaaacatgtctgaacttggcaatttcgcggattaagttgctgcaaaacaagagagatatgcagcttaaacatatgcgcaaggagattgctcagtttttgcaggctggccaagaagcaattgctcgaattcgggtggagcatgttatacgagagcaaaacatatgggctgcctatgagatattggagcttttctgtgaatttgtcctcgcacgggttcccattattgagagccaaaaggattgcccaccagaactacgagaggctatatcaagcataattttttctgccccaagatgttcagaagttccagatttattgcagatcaagaatttgtttacagcaaaatatgggaaggaatttatagcatctgcctctgagcttcgtcctgattctggtgtcaaccgaactataattgaaaagcttttagttagtgctccctctggagaggcaaggctcaaggtattgaaggaaatcgcacaagagtacaatctgaattgggattcttctagcacggaagcggaattcagtagaaaacatgaagatctactgggtggatccaagcacataagtggtggagctgcactgccttctcgagctcctgcaaatcaagtgtcttttagttctccgccttctaatggtgcacattatattaagccctcagagattaaaccagaacctcaacaacacattcctgctccaagatctttaattcggacgcatgtgtcaagtaccgatgagattcagccatcaattaataatgatacagtaccagttagggaaacaagaccacaatcatctgagatcctggagaaagctcgagctgccattgcgtctgccgaacgcgcatctgctgctgcccgttcagctgctgagctggttaagtcattatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

313

Amino Acids

34.68

Weight (kDa)

8.91

Isoelectric Point (pI)

58.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25420 AT1G25420 AT1G25420 AT1G25420
fragaria_vesca	FvH4_4g27290 FvH4_4g27290 FvH4_4g27290 FvH4_4g27290
malus_domestica	MD13G1040800.v1.1 MD16G1042100.v1.1
prunus_persica	Prupe.1G312000_v2.0.a1 Prupe.1G312000_v2.0.a1 Prupe.1G312000_v2.0.a1
pyrus_communis	pycom13g03520 pycom16g03640
rosa_chinensis	RchiOBHm_Chr4g0435061
rosa_laevigata	RLG00000006623
rosa_multiflora	Rmu_sc0000400.1_g000011
rosa_roxburghii	Rroxscaffold_5G00376270
rosa_rugosa	Rorug04G0282200
rosa_samantha	Rh4AG337600 Rh4BG345600 Rh4CG360300 Rh4DG340100
rosa_wichuraiana	Rw4G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	772
Acc16I	TGCGCA	1 cut(s)	128
AccII	CGCG	2 cut(s)	79, 894
AciI	CCGC	3 cut(s)	79, 569, 677
AclWI	GGATC	3 cut(s)	600, 613, 847
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	5 cut(s)	177, 248, 379, 407, 572
AfaI	GTAC	3 cut(s)	536, 781, 819
AfiI	CCNNNNNNNGG	3 cut(s)	262, 443, 686
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	4 cut(s)	13, 25, 467, 517
AjnI	CCWGG	1 cut(s)	855
AleI	CACNNNNGTG	1 cut(s)	618
Alw21I	GWGCWC	3 cut(s)	487, 649, 694
Alw26I	GTCTC	1 cut(s)	9
Alw44I	GTGCAC	1 cut(s)	690
AlwI	GGATC	3 cut(s)	600, 613, 847
AlwNI	CAGNNNCTG	1 cut(s)	920
Ama87I	CYCGRG	2 cut(s)	642, 867
AoxI	GGCC	1 cut(s)	157
ApaLI	GTGCAC	1 cut(s)	690
ApeKI	GCWGC	8 cut(s)	91, 112, 218, 629, 872, 902, 905, 917
ApoI	RAATTY	5 cut(s)	177, 248, 379, 407, 572
ArsI	GACNNNNNNTTYG	2 cut(s)	647, 679
AseI	ATTAAT	1 cut(s)	804
AspLEI	GCGC	2 cut(s)	129, 896
AvaI	CYCGRG	2 cut(s)	642, 867
BaeGI	GKGCMC	1 cut(s)	694
BalI	TGGCCA	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	649
Bbv12I	GWGCWC	3 cut(s)	487, 649, 694
BbvI	GCAGC	8 cut(s)	78, 124, 205, 616, 859, 889, 892, 904
BccI	CCATC	1 cut(s)	805
BciT130I	CCWGG	1 cut(s)	857
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	558
BglII	AGATCT	2 cut(s)	592, 752
BisI	GCNGC	8 cut(s)	92, 113, 219, 630, 873, 903, 906, 918
BlpI	GCTNAGC	1 cut(s)	921
BlsI	GCNGC	8 cut(s)	93, 114, 220, 631, 874, 904, 907, 919
Bme1390I	CCNGG	1 cut(s)	857
BmeT110I	CYCGRG	2 cut(s)	642, 867
BmiI	GGNNCC	2 cut(s)	267, 607
BmrFI	CCNGG	1 cut(s)	857
BmrI	ACTGGG	1 cut(s)	608
BmsI	GCATC	2 cut(s)	425, 905
BmuI	ACTGGG	1 cut(s)	608
BpmI	CTGGAG	2 cut(s)	513, 878
Bpu1102I	GCTNAGC	1 cut(s)	921
BpuEI	CTTGAG	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 443, 686
Bse1I	ACTGG	2 cut(s)	603, 821
Bse3DI	GCAATG	1 cut(s)	876
BseBI	CCWGG	1 cut(s)	857
BseLI	CCNNNNNNNGG	3 cut(s)	262, 443, 686
BseMI	GCAATG	1 cut(s)	876
BseMII	CTCAG	5 cut(s)	155, 417, 723, 840, 912
BseNI	ACTGG	2 cut(s)	603, 821
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	694
BseXI	GCAGC	8 cut(s)	78, 124, 205, 616, 859, 889, 892, 904
BsgI	GTGCAG	1 cut(s)	615
Bsh1236I	CGCG	2 cut(s)	79, 894
BshFI	GGCC	1 cut(s)	159
BsiHKAI	GWGCWC	3 cut(s)	487, 649, 694
BsiHKCI	CYCGRG	2 cut(s)	642, 867
BslI	CCNNNNNNNGG	3 cut(s)	262, 443, 686
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	159
BsoBI	CYCGRG	2 cut(s)	642, 867
Bsp1286I	GDGCHC	3 cut(s)	487, 649, 694
Bsp143I	GATC	5 cut(s)	372, 592, 605, 752, 852
Bsp1720I	GCTNAGC	1 cut(s)	921
BspACI	CCGC	3 cut(s)	79, 569, 677
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	5 cut(s)	154, 418, 722, 841, 913
BspFNI	CGCG	2 cut(s)	79, 894
BspLI	GGNNCC	2 cut(s)	267, 607
BspPI	GGATC	3 cut(s)	600, 613, 847
BspQI	GCTCTTC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	876
BsrI	ACTGG	2 cut(s)	603, 821
BssMI	GATC	5 cut(s)	372, 592, 605, 752, 852
Bst2UI	CCWGG	1 cut(s)	857
Bst4CI	ACNGT	1 cut(s)	817
Bst6I	CTCTTC	1 cut(s)	26
BstAPI	GCANNNNNTGC	2 cut(s)	48, 902
BstC8I	GCNNGC	2 cut(s)	153, 157
BstDEI	CTNAG	5 cut(s)	141, 426, 709, 849, 921
BstFNI	CGCG	2 cut(s)	79, 894
BstHHI	GCGC	2 cut(s)	129, 896
BstKTI	GATC	5 cut(s)	375, 595, 608, 755, 855
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	5 cut(s)	372, 592, 605, 752, 852
BstMWI	GCNNNNNNNGC	6 cut(s)	48, 872, 878, 893, 902, 914
BstNI	CCWGG	1 cut(s)	857
BstNSI	RCATGY	3 cut(s)	60, 194, 773
BstSCI	CCNGG	1 cut(s)	855
BstSLI	GKGCMC	1 cut(s)	694
BstUI	CGCG	2 cut(s)	79, 894
BstV1I	GCAGC	8 cut(s)	78, 124, 205, 616, 859, 889, 892, 904
BstX2I	RGATCY	4 cut(s)	592, 605, 752, 852
BstYI	RGATCY	4 cut(s)	592, 605, 752, 852
BsuRI	GGCC	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	632
BtsIMutI	CAGTG	1 cut(s)	632
Cac8I	GCNNGC	2 cut(s)	153, 157
CaiI	CAGNNNCTG	1 cut(s)	920
CfoI	GCGC	2 cut(s)	129, 896
CseI	GACGC	2 cut(s)	775, 870
Csp6I	GTAC	3 cut(s)	535, 780, 818
CviAII	CATG	4 cut(s)	57, 191, 587, 770
CviQI	GTAC	3 cut(s)	535, 780, 818
DdeI	CTNAG	5 cut(s)	141, 426, 709, 849, 921
DpnI	GATC	5 cut(s)	374, 594, 607, 754, 854
DpnII	GATC	5 cut(s)	372, 592, 605, 752, 852
DrdI	GACNNNNNNGTC	1 cut(s)	772
DseDI	GACNNNNNNGTC	1 cut(s)	772
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
EciI	GGCGGA	1 cut(s)	666
Ecl136II	GAGCTC	1 cut(s)	647
Eco24I	GRGCYC	1 cut(s)	649
Eco53kI	GAGCTC	1 cut(s)	647
Eco88I	CYCGRG	2 cut(s)	642, 867
EcoICRI	GAGCTC	1 cut(s)	647
EcoRI	GAATTC	2 cut(s)	177, 572
EcoRII	CCWGG	1 cut(s)	855
EcoT38I	GRGCYC	1 cut(s)	649
FaeI	CATG	4 cut(s)	60, 194, 590, 773
FatI	CATG	4 cut(s)	56, 190, 586, 769
FauNDI	CATATG	2 cut(s)	123, 212
Fnu4HI	GCNGC	8 cut(s)	92, 113, 219, 630, 873, 903, 906, 918
FriOI	GRGCYC	1 cut(s)	649
Fsp4HI	GCNGC	8 cut(s)	92, 113, 219, 630, 873, 903, 906, 918
FspBI	CTAG	1 cut(s)	558
FspI	TGCGCA	1 cut(s)	128
GlaI	GCGC	2 cut(s)	128, 895
GluI	GCNGC	8 cut(s)	92, 113, 219, 630, 873, 903, 906, 918
GsuI	CTGGAG	2 cut(s)	513, 878
HaeIII	GGCC	1 cut(s)	159
HgaI	GACGC	2 cut(s)	775, 870
HhaI	GCGC	2 cut(s)	129, 896
Hin1II	CATG	4 cut(s)	60, 194, 590, 773
Hin6I	GCGC	2 cut(s)	127, 894
HinP1I	GCGC	2 cut(s)	127, 894
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	3 cut(s)	440, 551, 790
Hpy166II	GTNNAC	3 cut(s)	387, 451, 692
Hpy188I	TCNGA	7 cut(s)	63, 352, 427, 543, 712, 765, 850
Hpy188III	TCNNGA	6 cut(s)	10, 359, 376, 437, 492, 642
Hpy8I	GTNNAC	3 cut(s)	387, 451, 692
HpyAV	CCTTC	4 cut(s)	397, 511, 648, 690
HpyCH4III	ACNGT	1 cut(s)	817
HpyCH4V	TGCA	8 cut(s)	51, 94, 112, 151, 370, 632, 653, 692
HpyF10VI	GCNNNNNNNGC	6 cut(s)	48, 872, 878, 893, 902, 914
HpyF3I	CTNAG	5 cut(s)	141, 426, 709, 849, 921
Hsp92II	CATG	4 cut(s)	60, 194, 590, 773
HspAI	GCGC	2 cut(s)	127, 894
Kzo9I	GATC	5 cut(s)	372, 592, 605, 752, 852
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	6 cut(s)	187, 235, 490, 626, 652, 751
Lsp1109I	GCAGC	8 cut(s)	78, 124, 205, 616, 859, 889, 892, 904
LweI	GCATC	2 cut(s)	425, 905
MaeI	CTAG	1 cut(s)	558
MalI	GATC	5 cut(s)	374, 594, 607, 754, 854
MboI	GATC	5 cut(s)	372, 592, 605, 752, 852
MboII	GAAGA	3 cut(s)	13, 546, 602
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	4 cut(s)	592, 605, 752, 852
MhlI	GDGCHC	3 cut(s)	487, 649, 694
MlsI	TGGCCA	1 cut(s)	159
MluNI	TGGCCA	1 cut(s)	159
MnlI	CCTC	8 cut(s)	23, 266, 304, 433, 490, 499, 718, 738
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	7 cut(s)	84, 117, 702, 717, 758, 804, 930
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	917
MspR9I	CCNGG	1 cut(s)	857
MunI	CAATTG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	857
MvnI	CGCG	2 cut(s)	79, 894
MwoI	GCNNNNNNNGC	6 cut(s)	48, 872, 878, 893, 902, 914
NdeI	CATATG	2 cut(s)	123, 212
NdeII	GATC	5 cut(s)	372, 592, 605, 752, 852
NlaIII	CATG	4 cut(s)	60, 194, 590, 773
NlaIV	GGNNCC	2 cut(s)	267, 607
NsbI	TGCGCA	1 cut(s)	128
NspI	RCATGY	3 cut(s)	60, 194, 773
OliI	CACNNNNGTG	1 cut(s)	618
PaeR7I	CTCGAG	2 cut(s)	642, 867
PciI	ACATGT	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	26
PfeI	GAWTC	3 cut(s)	440, 551, 790
PfoI	TCCNGGA	1 cut(s)	855
PkrI	GCNGC	8 cut(s)	93, 114, 220, 631, 874, 904, 907, 919
PscI	ACATGT	1 cut(s)	56
PshBI	ATTAAT	1 cut(s)	804
Psp124BI	GAGCTC	1 cut(s)	649
Psp6I	CCWGG	1 cut(s)	855
PspGI	CCWGG	1 cut(s)	855
PspN4I	GGNNCC	2 cut(s)	267, 607
PspXI	VCTCGAGB	1 cut(s)	867
PstNI	CAGNNNCTG	1 cut(s)	920
PsuI	RGATCY	4 cut(s)	592, 605, 752, 852
PvuII	CAGCTG	1 cut(s)	917
RsaI	GTAC	3 cut(s)	536, 781, 819
RsaNI	GTAC	3 cut(s)	535, 780, 818
RseI	CAYNNNNRTG	1 cut(s)	618
SacI	GAGCTC	1 cut(s)	649
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	7 cut(s)	84, 117, 702, 717, 758, 804, 930
SatI	GCNGC	8 cut(s)	92, 113, 219, 630, 873, 903, 906, 918
Sau3AI	GATC	5 cut(s)	372, 592, 605, 752, 852
ScrFI	CCNGG	1 cut(s)	857
SduI	GDGCHC	3 cut(s)	487, 649, 694
SfaNI	GCATC	2 cut(s)	425, 905
Sfr274I	CTCGAG	2 cut(s)	642, 867
SlaI	CTCGAG	2 cut(s)	642, 867
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	3 cut(s)	506, 642, 867
SmoI	CTYRAG	3 cut(s)	506, 642, 867
SsiI	CCGC	3 cut(s)	79, 569, 677
SspMI	CTAG	1 cut(s)	558
SstI	GAGCTC	1 cut(s)	649
StyD4I	CCNGG	1 cut(s)	855
TaaI	ACNGT	1 cut(s)	817
TaqI	TCGA	3 cut(s)	175, 643, 868
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	3 cut(s)	440, 551, 790
Tru1I	TTAA	7 cut(s)	84, 117, 702, 717, 758, 804, 930
Tru9I	TTAA	7 cut(s)	84, 117, 702, 717, 758, 804, 930
TscAI	CASTG	1 cut(s)	639
TseI	GCWGC	8 cut(s)	91, 112, 218, 629, 872, 902, 905, 917
TspDTI	ATGAA	1 cut(s)	603
TspGWI	ACGGA	1 cut(s)	578
TspRI	CASTG	1 cut(s)	639
VneI	GTGCAC	1 cut(s)	690
VspI	ATTAAT	1 cut(s)	804
XapI	RAATTY	5 cut(s)	177, 248, 379, 407, 572
XceI	RCATGY	3 cut(s)	60, 194, 773
XhoI	CTCGAG	2 cut(s)	642, 867
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.