Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007348

Physical Location & Seq

Genomic Coordinates Forward (+)

2330162 .. 2332504

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03520.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTCTCTGTTAAACCAGCTCTTCAACCGAGGCGTTTTCGGCACAAAATGCAAAACATGTTTGAATTTGGGTATTTCACGCATCAAATTACTGCAAAACAAGAGAGATGTGCAGCTCAAAAATATGCGCAAGGAGATTGCACAGTTTTTGCAGGCTGGCCAAGAAGCAATAGCTCGAATTCGGGTGGAGCATGTTATACGAGAGCAGAACATTTGGGCTGCTTATGAGATATTGGAGCTGTTCTGTGAATTCGTCCTTGCACGGGTTCCCATTATTGAAAGTCAGAGGGAGTGCCCAACGGAATTACGAGAAGCTATATCGAGCATAATTTTTGCTGCTCCAAGATGCTCAGATGTTCCAGATTTAATGCAGATCACAAATTTGTTTACAGCAAAATATGGGAAGGAATTTGCATCAGCTGTGTCTGAGCTTCGTCCTGATTCCGGTGTCAACAGAACAATAATTGAAAAGCTTTCAGTTAGTGCTCCCTCCGGAGAGGCAAGGCTCAAGGTACTGAAGGAAATTGCAAAAGAGTACAAGCTGAATTGGGATTCTTCTGACACTGAAGCGGAGTTCAGTAAAAAGCATGAAGATCTGCTGGGTGGACCGAAGCACATAAGTGGTGCTGCTGCACCTTCTCAAGCTCCCGCAAAACAAATCACATTTAGTTCCCCGCCTGCTAATGGGGCACATTCTATTGTGCCTGCAGATATTAAACAAGAACCTCAATACCTTCATGCTCCAAGATCTTTAAGCAAGACACCATCGTTCACTAATGAGATTCAACCATCAGCGAATGATGATAAAGCAAGACCAGTTAGTGAAACCAAAGGGGAGACAAGACCACAATCGTCTGATATCCTCGAGAGAGCTCGAGCTGCCATTGCCTCTGCTGAGCATGCGTCTGCTGCTGCCCGTCAGGCTGCAGAGCTGGTTAAGTCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

316

Amino Acids

34.7

Weight (kDa)

8.72

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25420 AT1G25420 AT1G25420 AT1G25420
fragaria_vesca	FvH4_4g27290 FvH4_4g27290 FvH4_4g27290 FvH4_4g27290
malus_domestica	MD13G1040800.v1.1 MD16G1042100.v1.1
prunus_persica	Prupe.1G312000_v2.0.a1 Prupe.1G312000_v2.0.a1 Prupe.1G312000_v2.0.a1
pyrus_communis	pycom13g03520 pycom16g03640
rosa_chinensis	RchiOBHm_Chr4g0435061
rosa_laevigata	RLG00000006623
rosa_multiflora	Rmu_sc0000400.1_g000011
rosa_roxburghii	Rroxscaffold_5G00376270
rosa_rugosa	Rorug04G0282200
rosa_samantha	Rh4AG337600 Rh4BG345600 Rh4CG360300 Rh4DG340100
rosa_wichuraiana	Rw4G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	946
Acc16I	TGCGCA	1 cut(s)	128
AccIII	TCCGGA	1 cut(s)	491
AciI	CCGC	3 cut(s)	569, 648, 674
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	5 cut(s)	64, 177, 248, 379, 407
AcuI	CTGAAG	2 cut(s)	536, 585
AfaI	GTAC	2 cut(s)	513, 536
AfiI	CCNNNNNNNGG	3 cut(s)	262, 443, 683
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	5 cut(s)	25, 64, 278, 467, 785
AleI	CACNNNNGTG	1 cut(s)	618
Alw21I	GWGCWC	2 cut(s)	487, 874
Alw26I	GTCTC	2 cut(s)	9, 830
Ama87I	CYCGRG	2 cut(s)	863, 873
Aor13HI	TCCGGA	1 cut(s)	491
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	9 cut(s)	112, 218, 335, 626, 629, 878, 908, 911, 923
ApoI	RAATTY	5 cut(s)	64, 177, 248, 379, 407
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	605
AvaI	CYCGRG	2 cut(s)	863, 873
AvaII	GGWCC	1 cut(s)	605
BaeGI	GKGCMC	2 cut(s)	296, 691
BalI	TGGCCA	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	874
Bbv12I	GWGCWC	2 cut(s)	487, 874
BbvI	GCAGC	9 cut(s)	124, 205, 322, 613, 616, 865, 895, 898, 910
BccI	CCATC	2 cut(s)	772, 796
BcoDI	GTCTC	2 cut(s)	9, 830
BfmI	CTRYAG	2 cut(s)	705, 924
BglI	GCCNNNNNGGC	1 cut(s)	920
BglII	AGATCT	2 cut(s)	592, 746
BisI	GCNGC	9 cut(s)	113, 219, 336, 627, 630, 879, 909, 912, 924
BlpI	GCTNAGC	1 cut(s)	894
BlsI	GCNGC	9 cut(s)	114, 220, 337, 628, 631, 880, 910, 913, 925
Bme18I	GGWCC	1 cut(s)	605
BmeT110I	CYCGRG	2 cut(s)	863, 873
BmgT120I	GGNCC	1 cut(s)	605
BmiI	GGNNCC	1 cut(s)	267
BmsI	GCATC	3 cut(s)	90, 335, 422
Bpu1102I	GCTNAGC	1 cut(s)	894
BpuEI	CTTGAG	2 cut(s)	491, 624
BsaJI	CCNNGG	1 cut(s)	28
BsaWI	WCCGGW	2 cut(s)	443, 491
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 443, 683
Bse1I	ACTGG	1 cut(s)	815
Bse3DI	GCAATG	1 cut(s)	882
BseAI	TCCGGA	1 cut(s)	491
BseDI	CCNNGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	3 cut(s)	262, 443, 683
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	3 cut(s)	363, 417, 885
BseNI	ACTGG	1 cut(s)	815
BseSI	GKGCMC	2 cut(s)	296, 691
BseXI	GCAGC	9 cut(s)	124, 205, 322, 613, 616, 865, 895, 898, 910
BseYI	CCCAGC	1 cut(s)	598
BsgI	GTGCAG	2 cut(s)	131, 615
BshFI	GGCC	1 cut(s)	159
BsiHKAI	GWGCWC	2 cut(s)	487, 874
BsiHKCI	CYCGRG	2 cut(s)	863, 873
BsiSI	CCGG	2 cut(s)	444, 492
BslI	CCNNNNNNNGG	3 cut(s)	262, 443, 683
BsmAI	GTCTC	2 cut(s)	9, 830
BsnI	GGCC	1 cut(s)	159
BsoBI	CYCGRG	2 cut(s)	863, 873
Bsp1286I	GDGCHC	4 cut(s)	296, 487, 691, 874
Bsp13I	TCCGGA	1 cut(s)	491
Bsp143I	GATC	3 cut(s)	372, 592, 746
Bsp1720I	GCTNAGC	1 cut(s)	894
BspACI	CCGC	3 cut(s)	569, 648, 674
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	3 cut(s)	362, 418, 886
BspEI	TCCGGA	1 cut(s)	491
BspLI	GGNNCC	1 cut(s)	267
BspMAI	CTGCAG	2 cut(s)	709, 928
BspQI	GCTCTTC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	882
BsrI	ACTGG	1 cut(s)	815
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	3 cut(s)	372, 592, 746
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	48
BstC8I	GCNNGC	5 cut(s)	153, 157, 678, 705, 900
BstDEI	CTNAG	3 cut(s)	349, 426, 894
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	3 cut(s)	375, 595, 749
BstMAI	GTCTC	2 cut(s)	9, 830
BstMBI	GATC	3 cut(s)	372, 592, 746
BstMWI	GCNNNNNNNGC	8 cut(s)	39, 48, 686, 878, 884, 899, 908, 920
BstNSI	RCATGY	3 cut(s)	60, 194, 902
BstSFI	CTRYAG	2 cut(s)	705, 924
BstSLI	GKGCMC	2 cut(s)	296, 691
BstV1I	GCAGC	9 cut(s)	124, 205, 322, 613, 616, 865, 895, 898, 910
BstX2I	RGATCY	2 cut(s)	592, 746
BstYI	RGATCY	2 cut(s)	592, 746
BsuRI	GGCC	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	561
Cac8I	GCNNGC	5 cut(s)	153, 157, 678, 705, 900
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	605
CseI	GACGC	1 cut(s)	891
Csp6I	GTAC	2 cut(s)	512, 535
CviAII	CATG	5 cut(s)	57, 191, 587, 737, 899
CviQI	GTAC	2 cut(s)	512, 535
DdeI	CTNAG	3 cut(s)	349, 426, 894
DpnI	GATC	3 cut(s)	374, 594, 748
DpnII	GATC	3 cut(s)	372, 592, 746
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	872
Eco24I	GRGCYC	1 cut(s)	874
Eco32I	GATATC	1 cut(s)	859
Eco47I	GGWCC	1 cut(s)	605
Eco53kI	GAGCTC	1 cut(s)	872
Eco57I	CTGAAG	2 cut(s)	536, 585
Eco88I	CYCGRG	2 cut(s)	863, 873
EcoICRI	GAGCTC	1 cut(s)	872
EcoRI	GAATTC	2 cut(s)	177, 248
EcoRV	GATATC	1 cut(s)	859
EcoT38I	GRGCYC	1 cut(s)	874
FaeI	CATG	5 cut(s)	60, 194, 590, 740, 902
FatI	CATG	5 cut(s)	56, 190, 586, 736, 898
FauI	CCCGC	2 cut(s)	655, 681
Fnu4HI	GCNGC	9 cut(s)	113, 219, 336, 627, 630, 879, 909, 912, 924
FriOI	GRGCYC	1 cut(s)	874
Fsp4HI	GCNGC	9 cut(s)	113, 219, 336, 627, 630, 879, 909, 912, 924
FspI	TGCGCA	1 cut(s)	128
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	9 cut(s)	113, 219, 336, 627, 630, 879, 909, 912, 924
GsaI	CCCAGC	1 cut(s)	602
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	2 cut(s)	444, 492
HgaI	GACGC	1 cut(s)	891
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	5 cut(s)	60, 194, 590, 740, 902
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	3 cut(s)	440, 551, 781
HpaII	CCGG	2 cut(s)	444, 492
Hpy166II	GTNNAC	4 cut(s)	387, 451, 605, 771
Hpy188I	TCNGA	5 cut(s)	285, 352, 427, 559, 856
Hpy188III	TCNNGA	4 cut(s)	359, 437, 492, 865
Hpy8I	GTNNAC	4 cut(s)	387, 451, 605, 771
HpyAV	CCTTC	4 cut(s)	397, 511, 645, 743
HpyCH4III	ACNGT	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	8 cut(s)	39, 48, 686, 878, 884, 899, 908, 920
HpyF3I	CTNAG	3 cut(s)	349, 426, 894
Hsp92II	CATG	5 cut(s)	60, 194, 590, 740, 902
HspAI	GCGC	1 cut(s)	127
Kpn2I	TCCGGA	1 cut(s)	491
Kzo9I	GATC	3 cut(s)	372, 592, 746
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	6 cut(s)	187, 235, 343, 490, 649, 745
Lsp1109I	GCAGC	9 cut(s)	124, 205, 322, 613, 616, 865, 895, 898, 910
LweI	GCATC	3 cut(s)	90, 335, 422
MalI	GATC	3 cut(s)	374, 594, 748
MboI	GATC	3 cut(s)	372, 592, 746
MboII	GAAGA	3 cut(s)	13, 546, 602
MflI	RGATCY	2 cut(s)	592, 746
MhlI	GDGCHC	4 cut(s)	296, 487, 691, 874
MlsI	TGGCCA	1 cut(s)	159
MluNI	TGGCCA	1 cut(s)	159
MnlI	CCTC	7 cut(s)	23, 279, 490, 499, 735, 872, 898
Mox20I	TGGCCA	1 cut(s)	159
MroI	TCCGGA	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	5 cut(s)	11, 365, 714, 752, 936
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	2 cut(s)	444, 492
MwoI	GCNNNNNNNGC	8 cut(s)	39, 48, 686, 878, 884, 899, 908, 920
NdeII	GATC	3 cut(s)	372, 592, 746
NlaIII	CATG	5 cut(s)	60, 194, 590, 740, 902
NlaIV	GGNNCC	1 cut(s)	267
NsbI	TGCGCA	1 cut(s)	128
NspI	RCATGY	3 cut(s)	60, 194, 902
OliI	CACNNNNGTG	1 cut(s)	618
PaeI	GCATGC	1 cut(s)	902
PaeR7I	CTCGAG	2 cut(s)	863, 873
PciI	ACATGT	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	26
PfeI	GAWTC	3 cut(s)	440, 551, 781
PkrI	GCNGC	9 cut(s)	114, 220, 337, 628, 631, 880, 910, 913, 925
PscI	ACATGT	1 cut(s)	56
PsiI	TTATAA	1 cut(s)	946
Psp124BI	GAGCTC	1 cut(s)	874
PspFI	CCCAGC	1 cut(s)	598
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	605
PspXI	VCTCGAGB	1 cut(s)	873
PstI	CTGCAG	2 cut(s)	709, 928
PsuI	RGATCY	2 cut(s)	592, 746
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	513, 536
RsaNI	GTAC	2 cut(s)	512, 535
RseI	CAYNNNNRTG	1 cut(s)	618
SacI	GAGCTC	1 cut(s)	874
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	5 cut(s)	11, 365, 714, 752, 936
SatI	GCNGC	9 cut(s)	113, 219, 336, 627, 630, 879, 909, 912, 924
Sau3AI	GATC	3 cut(s)	372, 592, 746
Sau96I	GGNCC	1 cut(s)	605
SduI	GDGCHC	4 cut(s)	296, 487, 691, 874
SfaNI	GCATC	3 cut(s)	90, 335, 422
SfcI	CTRYAG	2 cut(s)	705, 924
Sfr274I	CTCGAG	2 cut(s)	863, 873
SinI	GGWCC	1 cut(s)	605
SlaI	CTCGAG	2 cut(s)	863, 873
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	4 cut(s)	506, 639, 863, 873
SmoI	CTYRAG	4 cut(s)	506, 639, 863, 873
SphI	GCATGC	1 cut(s)	902
SsiI	CCGC	3 cut(s)	569, 648, 674
SstI	GAGCTC	1 cut(s)	874
TaaI	ACNGT	1 cut(s)	144
TaqI	TCGA	4 cut(s)	175, 320, 864, 874
TaqII	GACCGA	1 cut(s)	622
TatI	WGTACW	1 cut(s)	534
TfiI	GAWTC	3 cut(s)	440, 551, 781
Tru1I	TTAA	5 cut(s)	11, 365, 714, 752, 936
Tru9I	TTAA	5 cut(s)	11, 365, 714, 752, 936
TscAI	CASTG	1 cut(s)	568
TseI	GCWGC	9 cut(s)	112, 218, 335, 626, 629, 878, 908, 911, 923
TspDTI	ATGAA	2 cut(s)	603, 725
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	605
XapI	RAATTY	5 cut(s)	64, 177, 248, 379, 407
XceI	RCATGY	3 cut(s)	60, 194, 902
XhoI	CTCGAG	2 cut(s)	863, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.