Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007348

Physical Location & Seq

Genomic Coordinates Forward (+)

2251345 .. 2253621

Gene Structure 2277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g03640.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTCTCTGTTAAACCAGCTCTTCAACAGAGGCGTTTTCGGCACAAAATGCAAAACATGTTTGAATTTGGGTATTTCACGCATTAAATTGCTGCAAAACAAGAGAGATGTGCAGCTCAAACATATGCGCAAGGAGATTGCGCAGTTTTTGCAGGCTGGCCAAGAAGCAATAGCTCGAATTCGGGTGGAGCATGTTATACGAGAGCAAAACATTTGGGCTGCTTATGAGATATTGGAGCTGTTCTGTGAATTTGTACTTGCACGTGTTCCCATTATTGAAAATCAGAGGGAGTGTCCAACGGAATTACGAGAAGCTATATCGAGCATAATTTTTGCTGCCCCAAGATGCTCAGATGTTCCAGATTTAATGCAGATCACAAATTTGTTTACAGCAAAATATGGGAAGGAATTTGTATCAGCTGTGTCTGAGCTTCGTCCTGATTCTGGTGTCAATAGAACAATAATTGAAAAGCTTTCAGTTAGTGCTCCTTCTGGAGAGGCAAGGCTTAAGGTATTGAAGGAAATTGCACAAGAGTACAAGCTGAATTGGGATTCTTCTGACACTGAAGCGGAATTCAGTAAAAAGCATGACGATCTGCTGGGTGGATCGAAGCACGTAAGTGGTGCTGCTGCACCTTCTCAAGCTCCCACAAAACGAGTAACTTTTAGTTCCCCACCTTCTAATGGGGCACATACTATTGTGCCTGCAGATATTAAACAAGAACCTCAATACCTCCATGCTCCAAGATCTTTAATCAAGACACCATCGTTCAGTAGTGAGATTCAACCATCAGGGAATGATGATAAAGCAAGACCAGTTAGTGAAACCAAAGGGGAGACAAGACCACAATCATCTGATATCTTGGACAGAGCTCGAGCTGCCATTGCCTCTGCTGAGCGTGCATCTGCTGCTGCCCGTCGGGCTGCAGAGCTGGTTAAGTCCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

316

Amino Acids

34.82

Weight (kDa)

9.03

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25420 AT1G25420 AT1G25420 AT1G25420
fragaria_vesca	FvH4_4g27290 FvH4_4g27290 FvH4_4g27290 FvH4_4g27290
malus_domestica	MD13G1040800.v1.1 MD16G1042100.v1.1
prunus_persica	Prupe.1G312000_v2.0.a1 Prupe.1G312000_v2.0.a1 Prupe.1G312000_v2.0.a1
pyrus_communis	pycom13g03520 pycom16g03640
rosa_chinensis	RchiOBHm_Chr4g0435061
rosa_laevigata	RLG00000006623
rosa_multiflora	Rmu_sc0000400.1_g000011
rosa_roxburghii	Rroxscaffold_5G00376270
rosa_rugosa	Rorug04G0282200
rosa_samantha	Rh4AG337600 Rh4BG345600 Rh4CG360300 Rh4DG340100
rosa_wichuraiana	Rw4G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	128, 141
AciI	CCGC	1 cut(s)	569
AclWI	GGATC	1 cut(s)	613
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	6 cut(s)	64, 177, 248, 379, 407, 572
AcuI	CTGAAG	1 cut(s)	585
AcvI	CACGTG	1 cut(s)	263
AfaI	GTAC	2 cut(s)	255, 536
AfiI	CCNNNNNNNGG	2 cut(s)	443, 683
AflII	CTTAAG	1 cut(s)	506
AflIII	ACRYGT	2 cut(s)	56, 262
AgsI	TTSAA	6 cut(s)	25, 64, 278, 467, 517, 785
AleI	CACNNNNGTG	1 cut(s)	618
Alw21I	GWGCWC	2 cut(s)	487, 874
Alw26I	GTCTC	2 cut(s)	9, 830
AlwI	GGATC	1 cut(s)	613
Ama87I	CYCGRG	1 cut(s)	873
AoxI	GGCC	1 cut(s)	157
ApoI	RAATTY	6 cut(s)	64, 177, 248, 379, 407, 572
AspLEI	GCGC	2 cut(s)	129, 142
AvaI	CYCGRG	1 cut(s)	873
BaeGI	GKGCMC	1 cut(s)	691
BalI	TGGCCA	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	874
BbrPI	CACGTG	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	487, 874
BccI	CCATC	2 cut(s)	772, 796
BcoDI	GTCTC	2 cut(s)	9, 830
BfmI	CTRYAG	2 cut(s)	705, 924
BfrI	CTTAAG	1 cut(s)	506
BglI	GCCNNNNNGGC	1 cut(s)	920
BglII	AGATCT	1 cut(s)	746
BlpI	GCTNAGC	1 cut(s)	894
BmeT110I	CYCGRG	1 cut(s)	873
BmsI	GCATC	2 cut(s)	335, 911
BpmI	CTGGAG	1 cut(s)	513
Bpu1102I	GCTNAGC	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	624
BsaAI	YACGTR	2 cut(s)	263, 616
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 683
Bse1I	ACTGG	1 cut(s)	815
Bse3DI	GCAATG	1 cut(s)	882
BseLI	CCNNNNNNNGG	2 cut(s)	443, 683
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	3 cut(s)	363, 417, 885
BseNI	ACTGG	1 cut(s)	815
BseSI	GKGCMC	1 cut(s)	691
BseYI	CCCAGC	1 cut(s)	598
BsgI	GTGCAG	2 cut(s)	131, 615
BshFI	GGCC	1 cut(s)	159
BsiHKAI	GWGCWC	2 cut(s)	487, 874
BsiHKCI	CYCGRG	1 cut(s)	873
BslI	CCNNNNNNNGG	2 cut(s)	443, 683
BsmAI	GTCTC	2 cut(s)	9, 830
BsnI	GGCC	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	873
Bsp1286I	GDGCHC	3 cut(s)	487, 691, 874
Bsp143I	GATC	4 cut(s)	372, 592, 605, 746
Bsp1720I	GCTNAGC	1 cut(s)	894
BspACI	CCGC	1 cut(s)	569
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	3 cut(s)	362, 418, 886
BspMAI	CTGCAG	2 cut(s)	709, 928
BspPI	GGATC	1 cut(s)	613
BspQI	GCTCTTC	1 cut(s)	26
BspTI	CTTAAG	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	882
BsrI	ACTGG	1 cut(s)	815
BssMI	GATC	4 cut(s)	372, 592, 605, 746
Bst6I	CTCTTC	1 cut(s)	26
BstAFI	CTTAAG	1 cut(s)	506
BstAPI	GCANNNNNTGC	3 cut(s)	48, 148, 908
BstBAI	YACGTR	2 cut(s)	263, 616
BstC8I	GCNNGC	4 cut(s)	153, 157, 705, 900
BstDEI	CTNAG	3 cut(s)	349, 426, 894
BstHHI	GCGC	2 cut(s)	129, 142
BstKTI	GATC	4 cut(s)	375, 595, 608, 749
BstMAI	GTCTC	2 cut(s)	9, 830
BstMBI	GATC	4 cut(s)	372, 592, 605, 746
BstMWI	GCNNNNNNNGC	8 cut(s)	39, 48, 148, 878, 884, 899, 908, 920
BstNSI	RCATGY	2 cut(s)	60, 194
BstSFI	CTRYAG	2 cut(s)	705, 924
BstSLI	GKGCMC	1 cut(s)	691
BstX2I	RGATCY	1 cut(s)	746
BstYI	RGATCY	1 cut(s)	746
BsuRI	GGCC	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	561
Cac8I	GCNNGC	4 cut(s)	153, 157, 705, 900
CfoI	GCGC	2 cut(s)	129, 142
Csp6I	GTAC	2 cut(s)	254, 535
CviAII	CATG	4 cut(s)	57, 191, 587, 737
CviQI	GTAC	2 cut(s)	254, 535
DdeI	CTNAG	3 cut(s)	349, 426, 894
DpnI	GATC	4 cut(s)	374, 594, 607, 748
DpnII	GATC	4 cut(s)	372, 592, 605, 746
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	872
Eco24I	GRGCYC	1 cut(s)	874
Eco32I	GATATC	1 cut(s)	859
Eco53kI	GAGCTC	1 cut(s)	872
Eco57I	CTGAAG	1 cut(s)	585
Eco72I	CACGTG	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	873
EcoICRI	GAGCTC	1 cut(s)	872
EcoRI	GAATTC	2 cut(s)	177, 572
EcoRV	GATATC	1 cut(s)	859
EcoT38I	GRGCYC	1 cut(s)	874
FaeI	CATG	4 cut(s)	60, 194, 590, 740
FatI	CATG	4 cut(s)	56, 190, 586, 736
FauNDI	CATATG	1 cut(s)	123
FriOI	GRGCYC	1 cut(s)	874
FspI	TGCGCA	2 cut(s)	128, 141
GlaI	GCGC	2 cut(s)	128, 141
GsaI	CCCAGC	1 cut(s)	602
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	159
HhaI	GCGC	2 cut(s)	129, 142
Hin1II	CATG	4 cut(s)	60, 194, 590, 740
Hin6I	GCGC	2 cut(s)	127, 140
HinP1I	GCGC	2 cut(s)	127, 140
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	3 cut(s)	440, 551, 781
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	5 cut(s)	285, 352, 427, 559, 856
Hpy188III	TCNNGA	4 cut(s)	359, 437, 492, 757
Hpy8I	GTNNAC	1 cut(s)	387
Hpy99I	CGWCG	1 cut(s)	921
HpyAV	CCTTC	5 cut(s)	397, 498, 511, 645, 687
HpyCH4IV	ACGT	2 cut(s)	262, 615
HpyF10VI	GCNNNNNNNGC	8 cut(s)	39, 48, 148, 878, 884, 899, 908, 920
HpyF3I	CTNAG	3 cut(s)	349, 426, 894
HpySE526I	ACGT	2 cut(s)	262, 615
Hsp92II	CATG	4 cut(s)	60, 194, 590, 740
HspAI	GCGC	2 cut(s)	127, 140
Kzo9I	GATC	4 cut(s)	372, 592, 605, 746
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	5 cut(s)	187, 235, 490, 649, 745
LweI	GCATC	2 cut(s)	335, 911
MaeII	ACGT	2 cut(s)	262, 615
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	4 cut(s)	374, 594, 607, 748
MboI	GATC	4 cut(s)	372, 592, 605, 746
MboII	GAAGA	2 cut(s)	13, 546
MflI	RGATCY	1 cut(s)	746
MhlI	GDGCHC	3 cut(s)	487, 691, 874
MlsI	TGGCCA	1 cut(s)	159
MluNI	TGGCCA	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	320
MnlI	CCTC	6 cut(s)	23, 279, 490, 735, 743, 898
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	7 cut(s)	11, 84, 365, 507, 714, 752, 936
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	419
MspCI	CTTAAG	1 cut(s)	506
MwoI	GCNNNNNNNGC	8 cut(s)	39, 48, 148, 878, 884, 899, 908, 920
NdeI	CATATG	1 cut(s)	123
NdeII	GATC	4 cut(s)	372, 592, 605, 746
NlaIII	CATG	4 cut(s)	60, 194, 590, 740
NsbI	TGCGCA	2 cut(s)	128, 141
NspI	RCATGY	2 cut(s)	60, 194
OliI	CACNNNNGTG	1 cut(s)	618
PaeR7I	CTCGAG	1 cut(s)	873
PciI	ACATGT	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	26
PfeI	GAWTC	3 cut(s)	440, 551, 781
PmaCI	CACGTG	1 cut(s)	263
PmlI	CACGTG	1 cut(s)	263
Ppu21I	YACGTR	2 cut(s)	263, 616
PscI	ACATGT	1 cut(s)	56
Psp124BI	GAGCTC	1 cut(s)	874
PspCI	CACGTG	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	598
PspXI	VCTCGAGB	1 cut(s)	873
PstI	CTGCAG	2 cut(s)	709, 928
PsuI	RGATCY	1 cut(s)	746
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	255, 536
RsaNI	GTAC	2 cut(s)	254, 535
RseI	CAYNNNNRTG	1 cut(s)	618
SacI	GAGCTC	1 cut(s)	874
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	7 cut(s)	11, 84, 365, 507, 714, 752, 936
Sau3AI	GATC	4 cut(s)	372, 592, 605, 746
SduI	GDGCHC	3 cut(s)	487, 691, 874
SfaNI	GCATC	2 cut(s)	335, 911
SfcI	CTRYAG	2 cut(s)	705, 924
Sfr274I	CTCGAG	1 cut(s)	873
SlaI	CTCGAG	1 cut(s)	873
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	3 cut(s)	506, 639, 873
SmoI	CTYRAG	3 cut(s)	506, 639, 873
SsiI	CCGC	1 cut(s)	569
SstI	GAGCTC	1 cut(s)	874
TaiI	ACGT	2 cut(s)	265, 618
TaqI	TCGA	4 cut(s)	175, 320, 608, 874
TatI	WGTACW	2 cut(s)	253, 534
TfiI	GAWTC	3 cut(s)	440, 551, 781
Tru1I	TTAA	7 cut(s)	11, 84, 365, 507, 714, 752, 936
Tru9I	TTAA	7 cut(s)	11, 84, 365, 507, 714, 752, 936
TscAI	CASTG	1 cut(s)	568
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	568
Vha464I	CTTAAG	1 cut(s)	506
XapI	RAATTY	6 cut(s)	64, 177, 248, 379, 407, 572
XceI	RCATGY	2 cut(s)	60, 194
XhoI	CTCGAG	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.