Prupe.1G317300_v2.0.a1

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011786
Physical Location & Seq
Reverse (-)
30554142 .. 30556907
2766 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G317300.1

Sequence Viewer

Length: 2097 bp
ATGGAACCACCACCGGCGGCCCCATCGCTGCAGCCCCACCACCCCAACTACGCCGACTCCGTCGACTCCTCTCCTAGGTCCCGCAACACCGACTCATGGGACGAGCCTCTCCCCCCTACCACCAGGCTCCGCCTCATGTGCAGCTACGGCGGCCACATCGTCCCCCGCCCGCACGACAAGTCGTTGTGCTACGTCGGCGGCGACACCCGAATCGTCGTCGTCGACCGCCACACCTCCCTCTCCGACCTCTCCAACCGCCTCTCCAAGACCCTTCTCAACGGCCGCCCCTTCACCCTCAAGTACCAGCTCCCCAGCGAAGACCTCGATTCCTTAATCTCCGTCACCACCGACGAAGACCTCGACAACATGATCGACGAGTACGACCGTACGGCCACCAACAACAGCAACTCTTCCTCCAAGCCCTCCCGCCTCCGCCTCTTCCTCTTTCCCCTGAAGCCCGAATCGACGCAATCGATGGGACCCATTCTCGATATGCCGGCCACCAAGTCCGAGGACTGGTTCTTGAACGCGCTGAATGGCGCGTCTGGTATGCTCAATCGGGGCTTCTCCGATTCCGCCTCCGTGAATTGCTTGCTCGGTCTCGACGACGATGGGATTTCCGGTGGCGCTCCCAATAATTTGGACTCGGCTTCGAGAGACGCCGAGGCTACGATTCCTGCGAATTGCAAGAATGCCAAACAGGGTGGTGGTGGTGGGCAGGACGTTCACTCTGTGCCCGATTCCCCGATGCTCGAAAACTCGTCATCTTTTGGGTCCACGTCATCGTCGCCTTCTCTTGCGAACCTGCCGCCGATTCGGGTCCACGTGGAAGACGGCGGCGGAGGTGGTGGTGGGATTAGAGTGCAGGATCAGAAGATGGGGATTGAGGAGCAGTTTGCTCAGATGACTGTTGGTGGTGGTGGGCAGAAGCAAGATGAGGGTAGCTTCGTGGTGCTTTCTCCGCCGCCTCCGATGCCGACTACTATCGTGGCCTCCGCTGCGCCGCTGAGTTCGGCCACCGAGTACTTGAATCGTGTTGTGTCGGACGACGAGCGATCGGATCACGGCGCGCCGGCTGGGTATCGGAGACCGCCTCAGCCTCAGCTTCAGCTTCAGCCACAGACTCTGCCCGCTCAGTCTCAGCCCAAATCTATTGATTTGCCATCCCCAGATTCAGTATCAAGCGATAGTAGTTTCTCAAATGCGTCTCGCCCAAAACCTGTAATTTACCAAGACCCAGTTGTTCAAATACCCTCTGGAAATACCAGGTTTCCTGCAAACCTTGTGGATCCAAAATTGAATATGGCTGATCCAAACACTCGGGTTCAAATGCAACAACAGCTTCATGATTCTGGGTATGTATTGCAAGCCCAATTTGATCATCAACAACAGCAGCAGCAGCAACAACAACACCAACAAGCACACCAGCAACACCAACAAGCACAACAGCAACAGCAATTTATACACGCTGGTACACATTACATTCAGCATCACCCTGGCTCTGTTCCAATCCCGGCATACTACCCTGTATATCCTTCCCAGCAGCAGCAACACCATCAGCACCATCATCACCCCCAGCTTGATCAGCAGCAGCAGCAGCAATACCAGGTTTATTACATGCCTGCCAGACAGGCCCAACCTTACACCAACTTGCCTGTGCAGCAATCAAATATCAATGAAGCTGCTACTTCTATCCCTTCTAGCCGCTCCCAAACACCTCCAAATTCCGCCATGGTCTCTCCTTCTGCATCTTTCAACCAGATAAGGAATGCCCAGATTGCGAAACCCGATATGGCTGGGGGTGTGTACAGAACAGCAACCGCAGCTGCTCCTTCTGTGGTTCAAGTTCCTCCTCAGCATCAGCAACAATATGTTGGTTACACCACTCAGATTCATCAATCTGCTGTTCCTTCTTCAGGGGGTGCTGCTAATTATGCGTATGAATATGCTGAGCCTTCTCATGCCCAGATATACTATACACAGCCTCTGGCTCCGGCAATACCTTCTCAGTACCAAACCATGACAGCGGCCGCTGCCATGGTGCTGCCGGAAGGTTCTGCCCAGCTTCCAACTGACAACATCAAGCAGCAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

699

Amino Acids

75.86

Weight (kDa)

5.75

Isoelectric Point (pI)

67.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011786)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01190
fragaria_vesca FvH4_4g26650 FvH4_4g26650 FvH4_4g26650
malus_domestica MD13G1034900.v1.1 MD16G1036800.v1.1
prunus_persica Prupe.1G317300_v2.0.a1
pyrus_communis pycom13g03050 pycom16g03170
rosa_chinensis RchiOBHm_Chr4g0434361
rosa_laevigata RLG00000006680
rosa_multiflora Rmu_sc0016328.1_g000003
rosa_roxburghii Rroxscaffold_5G00375720
rosa_rugosa Rorug04G0276300
rosa_samantha Rh4AG331400 Rh4BG339300 Rh4CG354400 Rh4DG334400
rosa_wichuraiana Rw4G028740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 813
AccBSI CCGCTC 2 cut(s) 1133, 1707
AccI GTMKAC 2 cut(s) 63, 222
AccII CGCG 3 cut(s) 530, 542, 1070
AclWI GGATC 5 cut(s) 876, 1068, 1283, 1296, 1304
AcoI YGGCCR 6 cut(s) 151, 280, 390, 498, 1014, 2028
AcsI RAATTY 1 cut(s) 1723
AcuI CTGAAG 4 cut(s) 473, 1091, 1097, 1899
AcvI CACGTG 1 cut(s) 826
AcyI GRCGYC 1 cut(s) 660
AdeI CACNNNGTG 1 cut(s) 733
AfaI GTAC 7 cut(s) 302, 380, 388, 1025, 1474, 1808, 2012
AfiI CCNNNNNNNGG 4 cut(s) 75, 96, 516, 1916
AgsI TTSAA 7 cut(s) 526, 1030, 1247, 1300, 1328, 1756, 1844
AjiI CACGTC 1 cut(s) 780
AjnI CCWGG 4 cut(s) 122, 1265, 1495, 1605
Alw26I GTCTC 6 cut(s) 605, 651, 1081, 1143, 1212, 1741
AlwI GGATC 5 cut(s) 876, 1068, 1283, 1296, 1304
AlwNI CAGNNNCTG 2 cut(s) 1126, 1987
Ama87I CYCGRG 1 cut(s) 1320
AoxI GGCC 9 cut(s) 18, 151, 280, 390, 498, 990, 1014, 1632, 2028
ApoI RAATTY 1 cut(s) 1723
AscI GGCGCGCC 1 cut(s) 1068
AspA2I CCTAGG 1 cut(s) 74
AspLEI GCGC 6 cut(s) 532, 542, 629, 1003, 1070, 1072
AspS9I GGNCC 6 cut(s) 19, 78, 479, 774, 820, 1633
AsuC2I CCSGG 1 cut(s) 1514
AsuHPI GGTGA 4 cut(s) 283, 334, 1484, 1562
AvaI CYCGRG 1 cut(s) 1320
AvaII GGWCC 4 cut(s) 78, 479, 774, 820
AvrII CCTAGG 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 738
BamHI GGATCC 1 cut(s) 1288
BbrPI CACGTG 1 cut(s) 826
BbsI GAAGAC 3 cut(s) 324, 360, 837
BbvCI CCTCAGC 3 cut(s) 1095, 1101, 1854
BccI CCATC 7 cut(s) 31, 469, 605, 871, 1171, 1563, 1572
BceAI ACGGC 5 cut(s) 163, 295, 405, 850, 1081
BciT130I CCWGG 4 cut(s) 124, 1267, 1497, 1607
BclI TGATCA 2 cut(s) 1378, 1582
BcnI CCSGG 1 cut(s) 1514
BcoDI GTCTC 6 cut(s) 605, 651, 1081, 1143, 1212, 1741
BfaI CTAG 2 cut(s) 75, 1701
BfmI CTRYAG 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 630
BfuAI ACCTGC 1 cut(s) 813
BglI GCCNNNNNGGC 1 cut(s) 1631
BlnI CCTAGG 1 cut(s) 74
BlpI GCTNAGC 1 cut(s) 1950
BmcAI AGTACT 1 cut(s) 1025
Bme1390I CCNGG 5 cut(s) 124, 1267, 1497, 1514, 1607
Bme18I GGWCC 4 cut(s) 78, 479, 774, 820
BmeT110I CYCGRG 1 cut(s) 1320
BmgBI CACGTC 1 cut(s) 780
BmgT120I GGNCC 6 cut(s) 19, 78, 479, 774, 820, 1633
BmrFI CCNGG 5 cut(s) 124, 1267, 1497, 1514, 1607
BmrI ACTGGG 1 cut(s) 1232
BmsI GCATC 5 cut(s) 738, 963, 1498, 1757, 1867
BmuI ACTGGG 1 cut(s) 1232
BpiI GAAGAC 3 cut(s) 324, 360, 837
BplI GAGNNNNNCTC 2 cut(s) 1078, 1110
Bpu10I CCTNAGC 3 cut(s) 1095, 1101, 1854
Bpu1102I GCTNAGC 1 cut(s) 1950
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 1514
Bsa29I ATCGAT 1 cut(s) 473
BsaAI YACGTR 1 cut(s) 826
BsaHI GRCGYC 1 cut(s) 660
BsaI GGTCTC 3 cut(s) 605, 1081, 1741
BsaJI CCNNGG 6 cut(s) 74, 510, 663, 1495, 1731, 2037
BsaWI WCCGGW 1 cut(s) 620
BsaXI ACNNNNNCTCC 6 cut(s) 41, 71, 245, 275, 398, 428
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 96, 516, 1916
Bse118I RCCGGY 3 cut(s) 13, 496, 1072
Bse1I ACTGG 2 cut(s) 521, 1238
BseBI CCWGG 4 cut(s) 124, 1267, 1497, 1607
BseCI ATCGAT 1 cut(s) 473
BseDI CCNNGG 6 cut(s) 74, 510, 663, 1495, 1731, 2037
BseGI GGATG 1 cut(s) 1163
BseLI CCNNNNNNNGG 4 cut(s) 75, 96, 516, 1916
BseNI ACTGG 2 cut(s) 521, 1238
BsePI GCGCGC 1 cut(s) 1068
BseRI GAGGAG 3 cut(s) 58, 902, 1842
BseSI GKGCMC 1 cut(s) 738
BseX3I CGGCCG 2 cut(s) 280, 2028
BseYI CCCAGC 6 cut(s) 311, 1076, 1539, 1575, 1796, 2061
BsgI GTGCAG 3 cut(s) 160, 884, 1679
Bsh1236I CGCG 3 cut(s) 530, 542, 1070
Bsh1285I CGRYCG 5 cut(s) 226, 283, 385, 1058, 2031
BshFI GGCC 9 cut(s) 20, 153, 282, 392, 500, 992, 1016, 1634, 2030
BshVI ATCGAT 1 cut(s) 473
BsiEI CGRYCG 5 cut(s) 226, 283, 385, 1058, 2031
BsiHKCI CYCGRG 1 cut(s) 1320
BsiSI CCGG 7 cut(s) 14, 497, 621, 1073, 1514, 1994, 2048
BsiWI CGTACG 1 cut(s) 386
BslFI GGGAC 4 cut(s) 64, 113, 146, 492
BslI CCNNNNNNNGG 4 cut(s) 75, 96, 516, 1916
BsmAI GTCTC 6 cut(s) 605, 651, 1081, 1143, 1212, 1741
BsmBI CGTCTC 2 cut(s) 651, 1212
BsmFI GGGAC 4 cut(s) 64, 113, 146, 492
BsmI GAATGC 2 cut(s) 697, 1774
BsnI GGCC 9 cut(s) 20, 153, 282, 392, 500, 992, 1016, 1634, 2030
Bso31I GGTCTC 3 cut(s) 605, 1081, 1741
BsoBI CYCGRG 1 cut(s) 1320
Bsp1286I GDGCHC 1 cut(s) 738
Bsp1407I TGTACA 1 cut(s) 1806
Bsp143I GATC 8 cut(s) 369, 868, 1055, 1060, 1288, 1309, 1378, 1582
Bsp1720I GCTNAGC 1 cut(s) 1950
Bsp19I CCATGG 2 cut(s) 1731, 2037
BspANI GGCC 9 cut(s) 20, 153, 282, 392, 500, 992, 1016, 1634, 2030
BspDI ATCGAT 1 cut(s) 473
BspFNI CGCG 3 cut(s) 530, 542, 1070
BspHI TCATGA 1 cut(s) 1345
BspMAI CTGCAG 1 cut(s) 33
BspMI ACCTGC 1 cut(s) 813
BspPI GGATC 5 cut(s) 876, 1068, 1283, 1296, 1304
BspTNI GGTCTC 3 cut(s) 605, 1081, 1741
BsrBI CCGCTC 2 cut(s) 1133, 1707
BsrFI RCCGGY 3 cut(s) 13, 496, 1072
BsrGI TGTACA 1 cut(s) 1806
BsrI ACTGG 2 cut(s) 521, 1238
BssAI RCCGGY 3 cut(s) 13, 496, 1072
BssECI CCNNGG 6 cut(s) 74, 510, 663, 1495, 1731, 2037
BssHII GCGCGC 1 cut(s) 1068
BssMI GATC 8 cut(s) 369, 868, 1055, 1060, 1288, 1309, 1378, 1582
BssNI GRCGYC 1 cut(s) 660
BssT1I CCWWGG 3 cut(s) 74, 1731, 2037
Bst2UI CCWGG 4 cut(s) 124, 1267, 1497, 1607
Bst4CI ACNGT 2 cut(s) 386, 910
Bst6I CTCTTC 2 cut(s) 415, 443
BstACI GRCGYC 1 cut(s) 660
BstAUI TGTACA 1 cut(s) 1806
BstBAI YACGTR 1 cut(s) 826
BstC8I GCNNGC 8 cut(s) 170, 498, 593, 1070, 1074, 1131, 1368, 1623
BstDSI CCRYGG 2 cut(s) 1731, 2037
BstENI CCTNNNNNAGG 2 cut(s) 73, 1914
BstF5I GGATG 1 cut(s) 1163
BstFNI CGCG 3 cut(s) 530, 542, 1070
BstH2I RGCGCY 1 cut(s) 630
BstHHI GCGC 6 cut(s) 532, 542, 629, 1003, 1070, 1072
BstKTI GATC 8 cut(s) 372, 871, 1058, 1063, 1291, 1312, 1381, 1585
BstMAI GTCTC 6 cut(s) 605, 651, 1081, 1143, 1212, 1741
BstMBI GATC 8 cut(s) 369, 868, 1055, 1060, 1288, 1309, 1378, 1582
BstMCI CGRYCG 5 cut(s) 226, 283, 385, 1058, 2031
BstNI CCWGG 4 cut(s) 124, 1267, 1497, 1607
BstNSI RCATGY 1 cut(s) 1621
BstSCI CCNGG 5 cut(s) 122, 1265, 1495, 1512, 1605
BstSFI CTRYAG 1 cut(s) 29
BstSLI GKGCMC 1 cut(s) 738
BstUI CGCG 3 cut(s) 530, 542, 1070
BstV2I GAAGAC 3 cut(s) 324, 360, 837
BstX2I RGATCY 1 cut(s) 1288
BstXI CCANNNNNNTGG 1 cut(s) 640
BstYI RGATCY 1 cut(s) 1288
BstZI CGGCCG 2 cut(s) 280, 2028
Bsu15I ATCGAT 1 cut(s) 473
BsuRI GGCC 9 cut(s) 20, 153, 282, 392, 500, 992, 1016, 1634, 2030
BsuTUI ATCGAT 1 cut(s) 473
BtgI CCRYGG 2 cut(s) 1731, 2037
BtgZI GCGATG 1 cut(s) 9
BtrI CACGTC 1 cut(s) 780
BtsCI GGATG 1 cut(s) 1163
BveI ACCTGC 1 cut(s) 813
Cac8I GCNNGC 8 cut(s) 170, 498, 593, 1070, 1074, 1131, 1368, 1623
CaiI CAGNNNCTG 2 cut(s) 1126, 1987
CciI TCATGA 1 cut(s) 1345
CciNI GCGGCCGC 1 cut(s) 2028
CfoI GCGC 6 cut(s) 532, 542, 629, 1003, 1070, 1072
Cfr10I RCCGGY 3 cut(s) 13, 496, 1072
Cfr13I GGNCC 6 cut(s) 19, 78, 479, 774, 820, 1633
ClaI ATCGAT 1 cut(s) 473
CseI GACGC 4 cut(s) 475, 531, 668, 1194
CsiI ACCWGGT 2 cut(s) 1265, 1605
Csp6I GTAC 7 cut(s) 301, 379, 387, 1024, 1473, 1807, 2011
CspCI CAANNNNNGTGG 4 cut(s) 685, 720, 1266, 1301
CviAII CATG 9 cut(s) 96, 136, 367, 1346, 1618, 1732, 1961, 2020, 2038
CviQI GTAC 7 cut(s) 301, 379, 387, 1024, 1473, 1807, 2011
DpnI GATC 8 cut(s) 371, 870, 1057, 1062, 1290, 1311, 1380, 1584
DpnII GATC 8 cut(s) 369, 868, 1055, 1060, 1288, 1309, 1378, 1582
DraIII CACNNNGTG 1 cut(s) 733
EaeI YGGCCR 6 cut(s) 151, 280, 390, 498, 1014, 2028
EagI CGGCCG 2 cut(s) 280, 2028
Eam1104I CTCTTC 2 cut(s) 415, 443
EarI CTCTTC 2 cut(s) 415, 443
EciI GGCGGA 6 cut(s) 119, 422, 565, 855, 951, 1717
EclXI CGGCCG 2 cut(s) 280, 2028
Eco130I CCWWGG 3 cut(s) 74, 1731, 2037
Eco31I GGTCTC 3 cut(s) 605, 1081, 1741
Eco47I GGWCC 4 cut(s) 78, 479, 774, 820
Eco52I CGGCCG 2 cut(s) 280, 2028
Eco57I CTGAAG 4 cut(s) 473, 1091, 1097, 1899
Eco72I CACGTG 1 cut(s) 826
Eco88I CYCGRG 1 cut(s) 1320
EcoNI CCTNNNNNAGG 2 cut(s) 73, 1914
EcoO109I RGGNCCY 2 cut(s) 78, 479
EcoRII CCWGG 4 cut(s) 122, 1265, 1495, 1605
EcoT14I CCWWGG 3 cut(s) 74, 1731, 2037
ErhI CCWWGG 3 cut(s) 74, 1731, 2037
Esp3I CGTCTC 2 cut(s) 651, 1212
FaeI CATG 9 cut(s) 99, 139, 370, 1349, 1621, 1735, 1964, 2023, 2041
FaqI GGGAC 4 cut(s) 64, 113, 146, 492
FatI CATG 9 cut(s) 95, 135, 366, 1345, 1617, 1731, 1960, 2019, 2037
FauI CCCGC 5 cut(s) 89, 173, 177, 434, 1138
FbaI TGATCA 2 cut(s) 1378, 1582
FblI GTMKAC 2 cut(s) 63, 222
FokI GGATG 1 cut(s) 1150
FspBI CTAG 2 cut(s) 75, 1701
GlaI GCGC 6 cut(s) 531, 541, 628, 1002, 1069, 1071
GsaI CCCAGC 6 cut(s) 315, 1080, 1543, 1579, 1800, 2065
HaeII RGCGCY 1 cut(s) 630
HaeIII GGCC 9 cut(s) 20, 153, 282, 392, 500, 992, 1016, 1634, 2030
HapII CCGG 7 cut(s) 14, 497, 621, 1073, 1514, 1994, 2048
HgaI GACGC 4 cut(s) 475, 531, 668, 1194
HhaI GCGC 6 cut(s) 532, 542, 629, 1003, 1070, 1072
Hin1I GRCGYC 1 cut(s) 660
Hin1II CATG 9 cut(s) 99, 139, 370, 1349, 1621, 1735, 1964, 2023, 2041
Hin6I GCGC 6 cut(s) 530, 540, 627, 1001, 1068, 1070
HinP1I GCGC 6 cut(s) 530, 540, 627, 1001, 1068, 1070
HincII GTYRAC 2 cut(s) 64, 223
HindII GTYRAC 2 cut(s) 64, 223
HpaII CCGG 7 cut(s) 14, 497, 621, 1073, 1514, 1994, 2048
HphI GGTGA 4 cut(s) 283, 334, 1484, 1562
Hpy166II GTNNAC 7 cut(s) 64, 223, 727, 777, 823, 1475, 1807
Hpy188III TCNNGA 6 cut(s) 488, 523, 602, 654, 1257, 1346
Hpy8I GTNNAC 7 cut(s) 64, 223, 727, 777, 823, 1475, 1807
HpyCH4III ACNGT 2 cut(s) 386, 910
HpyCH4IV ACGT 4 cut(s) 192, 723, 779, 825
HpyCH4V TGCA 9 cut(s) 31, 141, 687, 865, 1277, 1333, 1366, 1660, 1748
HpySE526I ACGT 4 cut(s) 192, 723, 779, 825
Hsp92I GRCGYC 1 cut(s) 660
Hsp92II CATG 9 cut(s) 99, 139, 370, 1349, 1621, 1735, 1964, 2023, 2041
HspAI GCGC 6 cut(s) 530, 540, 627, 1001, 1068, 1070
KflI GGGWCCC 1 cut(s) 479
KroI GCCGGC 2 cut(s) 496, 1072
KroNI GCCGGC 2 cut(s) 498, 1074
Ksp22I TGATCA 2 cut(s) 1378, 1582
Kzo9I GATC 8 cut(s) 369, 868, 1055, 1060, 1288, 1309, 1378, 1582
LmnI GCTCC 7 cut(s) 132, 312, 634, 889, 1712, 1834, 1996
LweI GCATC 5 cut(s) 738, 963, 1498, 1757, 1867
MabI ACCWGGT 2 cut(s) 1265, 1605
MaeI CTAG 2 cut(s) 75, 1701
MaeII ACGT 4 cut(s) 192, 723, 779, 825
MaeIII GTNAC 2 cut(s) 340, 1877
MalI GATC 8 cut(s) 371, 870, 1057, 1062, 1290, 1311, 1380, 1584
MbiI CCGCTC 2 cut(s) 1133, 1707
MboI GATC 8 cut(s) 369, 868, 1055, 1060, 1288, 1309, 1378, 1582
MboII GAAGA 7 cut(s) 329, 365, 402, 430, 842, 886, 1905
MflI RGATCY 1 cut(s) 1288
MhlI GDGCHC 1 cut(s) 738
MluCI AATT 9 cut(s) 586, 637, 682, 1224, 1295, 1373, 1457, 1723, 1930
MlyI GAGTC 5 cut(s) 50, 59, 86, 638, 1117
MmeI TCCRAC 4 cut(s) 267, 276, 1023, 2093
MroNI GCCGGC 2 cut(s) 496, 1072
MseI TTAA 1 cut(s) 332
MspA1I CMGCKG 5 cut(s) 998, 1006, 1826, 2027, 2033
MspI CCGG 7 cut(s) 14, 497, 621, 1073, 1514, 1994, 2048
MspR9I CCNGG 5 cut(s) 124, 1267, 1497, 1514, 1607
Mva1269I GAATGC 2 cut(s) 697, 1774
MvaI CCWGG 4 cut(s) 124, 1267, 1497, 1607
MvnI CGCG 3 cut(s) 530, 542, 1070
NaeI GCCGGC 2 cut(s) 498, 1074
NciI CCSGG 1 cut(s) 1514
NcoI CCATGG 2 cut(s) 1731, 2037
NdeII GATC 8 cut(s) 369, 868, 1055, 1060, 1288, 1309, 1378, 1582
NgoMIV GCCGGC 2 cut(s) 496, 1072
NlaIII CATG 9 cut(s) 99, 139, 370, 1349, 1621, 1735, 1964, 2023, 2041
NmeAIII GCCGAG 2 cut(s) 626, 688
NmuCI GTSAC 1 cut(s) 340
NotI GCGGCCGC 1 cut(s) 2028
NspI RCATGY 1 cut(s) 1621
PagI TCATGA 1 cut(s) 1345
PalAI GGCGCGCC 1 cut(s) 1068
PauI GCGCGC 1 cut(s) 1068
PcsI WCGNNNNNNNCGW 8 cut(s) 57, 198, 219, 357, 378, 470, 603, 677
PctI GAATGC 2 cut(s) 697, 1774
PdiI GCCGGC 2 cut(s) 498, 1074
Pfl23II CGTACG 1 cut(s) 386
PflFI GACNNNGTC 1 cut(s) 59
Ple19I CGATCG 1 cut(s) 1058
PleI GAGTC 5 cut(s) 50, 59, 86, 638, 1117
PmaCI CACGTG 1 cut(s) 826
PmlI CACGTG 1 cut(s) 826
PpsI GAGTC 5 cut(s) 50, 59, 86, 638, 1117
Ppu21I YACGTR 1 cut(s) 826
PpuMI RGGWCCY 2 cut(s) 78, 479
Psp5II RGGWCCY 2 cut(s) 78, 479
Psp6I CCWGG 4 cut(s) 122, 1265, 1495, 1605
PspCI CACGTG 1 cut(s) 826
PspFI CCCAGC 6 cut(s) 311, 1076, 1539, 1575, 1796, 2061
PspGI CCWGG 4 cut(s) 122, 1265, 1495, 1605
PspLI CGTACG 1 cut(s) 386
PspPI GGNCC 6 cut(s) 19, 78, 479, 774, 820, 1633
PspPPI RGGWCCY 2 cut(s) 78, 479
PstI CTGCAG 1 cut(s) 33
PstNI CAGNNNCTG 2 cut(s) 1126, 1987
PsuI RGATCY 1 cut(s) 1288
PsyI GACNNNGTC 1 cut(s) 59
PteI GCGCGC 1 cut(s) 1068
PvuI CGATCG 1 cut(s) 1058
PvuII CAGCTG 1 cut(s) 1826
RsaI GTAC 7 cut(s) 302, 380, 388, 1025, 1474, 1808, 2012
RsaNI GTAC 7 cut(s) 301, 379, 387, 1024, 1473, 1807, 2011
SalI GTCGAC 2 cut(s) 62, 221
SaqAI TTAA 1 cut(s) 332
Sau3AI GATC 8 cut(s) 369, 868, 1055, 1060, 1288, 1309, 1378, 1582
Sau96I GGNCC 6 cut(s) 19, 78, 479, 774, 820, 1633
ScaI AGTACT 1 cut(s) 1025
SchI GAGTC 5 cut(s) 50, 59, 86, 638, 1117
ScrFI CCNGG 5 cut(s) 124, 1267, 1497, 1514, 1607
SduI GDGCHC 1 cut(s) 738
SexAI ACCWGGT 2 cut(s) 1265, 1605
SfaNI GCATC 5 cut(s) 738, 963, 1498, 1757, 1867
SfcI CTRYAG 1 cut(s) 29
SgrAI CRCCGGYG 1 cut(s) 13
SgsI GGCGCGCC 1 cut(s) 1068
SinI GGWCC 4 cut(s) 78, 479, 774, 820
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 9 cut(s) 586, 637, 682, 1224, 1295, 1373, 1457, 1723, 1930
SspMI CTAG 2 cut(s) 75, 1701
StyD4I CCNGG 5 cut(s) 122, 1265, 1495, 1512, 1605
StyI CCWWGG 3 cut(s) 74, 1731, 2037
TaaI ACNGT 2 cut(s) 386, 910
TaiI ACGT 4 cut(s) 195, 726, 782, 828
TaqII GACCGA 1 cut(s) 587
TasI AATT 9 cut(s) 586, 637, 682, 1224, 1295, 1373, 1457, 1723, 1930
TatI WGTACW 2 cut(s) 1023, 1806
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TseFI GTSAC 1 cut(s) 340
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 4 cut(s) 1334, 1692, 1883, 1956
TspGWI ACGGA 3 cut(s) 49, 328, 571
Tth111I GACNNNGTC 1 cut(s) 59
VpaK11BI GGWCC 4 cut(s) 78, 479, 774, 820
XagI CCTNNNNNAGG 2 cut(s) 73, 1914
XapI RAATTY 1 cut(s) 1723
XceI RCATGY 1 cut(s) 1621
XmaJI CCTAGG 1 cut(s) 74
XmiI GTMKAC 2 cut(s) 63, 222
XspI CTAG 2 cut(s) 75, 1701
ZrmI AGTACT 1 cut(s) 1025
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.