Rmu_sc0016328.1_g000003

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016328.1
OG0011786
Physical Location & Seq
Reverse (-)
9108 .. 11496
2389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016328.1_g000003.1.cds

Sequence Viewer

Length: 2148 bp
atggagccaccggcggcggcgccgccaatccagactcactacgccgactcgctagattcgtcgccgaggtcccgtaacaccgactcctgggacgacccgctcccgccggcgtccaggctccggctgatgtgcagctacggcggccacatcgtgccgcggccgcacgacaagtcgttgtgctacgtcggcggcgacactcgaatcgtggtggtggacaggaacacttcgcttgcggacctctcgaatcgtctggcgaagacgcttttgaataaccggccgttcacgctgaaataccagttgccgagcgaggacctggactcgttgatctccgtgacgaccgacgaggatttggataatatgatcgacgagtttgaccggacggcgagccacaattcgtcggcgaagccggcgcggattcggctgtttctgtttccgctgaagccggattcgtcgcagtcgatggggcccctcgatatgccgaccaagtcggaggactggttcttcaacgcgctcaacggctcgtcggagatactcaaccgcggcttctccgactccgcctccgtcaactgcttgctcggcctagacgacgacggcggcggcggcggggcgaacaattcggattcgagaggaggagacgcggaggcttctgctgcggcgaattgcaagaacggtaaaccggacgttcactctgtccccgattcgccgatgctcgagaactcgtcgtcgtttgggtcaacatcgtcgtctccgtcgctggcgaatttgcctccgattcgggtccacgtggaagacagcggtgggagcagtcacggtggcaatagagcgcaggatcagaaggttgggattgaagagcagtttgctcagatgacggtgggtttggttgggcagcagcagaagcaagacgatagcggcggctttgtggtgctgtcttcaccgccgccgttgccgactactattgtgccttcctctgcgccggtgagttcttcttcggcccctgattacctgaatcggatcgtctccgatgacgaacgatccgatcacggtggatatcggaaaccgcttcctcctcagcctcagcaacagagtgtaccgcctcagtctcagcccaaatcaaccggaatttttgatttgccgtcgccagattcagtgtcaagtgatcatagtttatcaaatgctgccatatctcgcccaaaacctgtaatttatcaagaaccagttgctcaaatacccgcggtaacccccacaaggtttcctgcaaatcttgttgatccgaaagttaatgtctccgatccaaacactcgggttcagttgcaacaacaggttcaggattctgggtatgtattgcaagcccaatatgatcaacaactacaacagcagcaactactacaacaacaacaacaactacaacaacagcaacaatttatacaccctggtgcacagtacatgcatcatcaccctgctgggtctgtgccaattcaggcatactaccctgtatatcagcagcaacagcaccagcagcaacagcaccagcagcaccagcagcaacagcaccagcaccagcagcaacagcaacaccaccatcatcctcagctcgatcagcagcagcaataccaggtttattacatgcctgcaagacaggcccaagcttacagcaacttgcccctgcagcaaccgctgcagtccaacattagtgaagctgctgctgctactattgcttctagccggtctcaaccgcctcccaatccaatgctctctcctaccgcagcttacagccagataaggaatgcccccattgccaaacccgaaattgctgctggtgtgtacaggacaacaactacagctgctcctccatctctggttcaagttccccctactcagcatcagcctcagcaacaatatgttggttacacacaggttcatcacccgtctcaatcaactgttcctacttcaacaggtgctgctaattatgcctatgaatatgccgatgcttctcatgctcagcatgcccaggtatactatactcagcctctagcacccgcaatgacttctcagtaccaaaccatgacagctgcagctgccatggggctgccggaagtttcaactcagcttcctaatgacaacatcaagcagcagcagcagcagcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

715

Amino Acids

78.1

Weight (kDa)

5.73

Isoelectric Point (pI)

70.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011786)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01190
fragaria_vesca FvH4_4g26650 FvH4_4g26650 FvH4_4g26650
malus_domestica MD13G1034900.v1.1 MD16G1036800.v1.1
prunus_persica Prupe.1G317300_v2.0.a1
pyrus_communis pycom13g03050 pycom16g03170
rosa_chinensis RchiOBHm_Chr4g0434361
rosa_laevigata RLG00000006680
rosa_multiflora Rmu_sc0016328.1_g000003
rosa_roxburghii Rroxscaffold_5G00375720
rosa_rugosa Rorug04G0276300
rosa_samantha Rh4AG331400 Rh4BG339300 Rh4CG354400 Rh4DG334400
rosa_wichuraiana Rw4G028740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccBSI CCGCTC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 2013
AccII CGCG 6 cut(s) 157, 412, 509, 540, 638, 1232
AclWI GGATC 5 cut(s) 837, 1019, 1026, 1262, 1283
AcoI YGGCCR 3 cut(s) 142, 158, 275
AcsI RAATTY 2 cut(s) 760, 1119
AcuI CTGAAG 1 cut(s) 458
AcvI CACGTG 1 cut(s) 784
AcyI GRCGYC 2 cut(s) 20, 110
AdeI CACNNNGTG 1 cut(s) 151
AfaI GTAC 4 cut(s) 1089, 1442, 1823, 2054
AfiI CCNNNNNNNGG 3 cut(s) 87, 120, 1245
AgsI TTSAA 6 cut(s) 268, 505, 848, 1862, 1950, 2100
AjnI CCWGG 6 cut(s) 86, 113, 312, 1429, 1611, 2007
AleI CACNNNNGTG 1 cut(s) 1431
AloI GAACNNNNNNTCC 2 cut(s) 482, 514
AluBI AGCT 9 cut(s) 135, 1591, 1646, 1697, 1766, 1841, 2069, 2075, 2107
AluI AGCT 9 cut(s) 135, 1591, 1646, 1697, 1766, 1841, 2069, 2075, 2107
Alw21I GWGCWC 1 cut(s) 1438
Alw26I GTCTC 7 cut(s) 627, 750, 1021, 1104, 1288, 1731, 1932
Alw44I GTGCAC 1 cut(s) 1434
AlwI GGATC 5 cut(s) 837, 1019, 1026, 1262, 1283
AlwNI CAGNNNCTG 1 cut(s) 1958
Ama87I CYCGRG 2 cut(s) 710, 1299
AoxI GGCC 7 cut(s) 142, 158, 275, 464, 577, 990, 1638
ApaI GGGCCC 1 cut(s) 468
ApaLI GTGCAC 1 cut(s) 1434
ApoI RAATTY 2 cut(s) 760, 1119
ArsI GACNNNNNNTTYG 2 cut(s) 859, 891
AspLEI GCGC 5 cut(s) 22, 412, 511, 826, 973
AspS9I GGNCC 8 cut(s) 69, 235, 310, 464, 465, 778, 991, 1639
AsuHPI GGTGA 4 cut(s) 924, 988, 1445, 1913
AvaI CYCGRG 2 cut(s) 710, 1299
AvaII GGWCC 4 cut(s) 69, 235, 310, 778
BaeGI GKGCMC 2 cut(s) 468, 1438
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 468
BbrPI CACGTG 1 cut(s) 784
BbsI GAAGAC 3 cut(s) 263, 795, 921
Bbv12I GWGCWC 1 cut(s) 1438
BbvCI CCTCAGC 4 cut(s) 1068, 1074, 1587, 1887
BccI CCATC 3 cut(s) 454, 1587, 1858
BceAI ACGGC 7 cut(s) 154, 262, 396, 532, 607, 925, 1117
BcgI CGANNNNNNTGC 2 cut(s) 1793, 1827
BciT130I CCWGG 6 cut(s) 88, 115, 314, 1431, 1613, 2009
BclI TGATCA 2 cut(s) 1156, 1357
BcoDI GTCTC 7 cut(s) 627, 750, 1021, 1104, 1288, 1731, 1932
BfaI CTAG 4 cut(s) 53, 581, 1719, 2030
BfmI CTRYAG 4 cut(s) 1664, 1676, 1836, 2070
BfoI RGCGCY 1 cut(s) 23
BlpI GCTNAGC 1 cut(s) 1998
Bme1390I CCNGG 6 cut(s) 88, 115, 314, 1431, 1613, 2009
Bme18I GGWCC 4 cut(s) 69, 235, 310, 778
BmeT110I CYCGRG 2 cut(s) 710, 1299
BmgT120I GGNCC 8 cut(s) 69, 235, 310, 464, 465, 778, 991, 1639
BmiI GGNNCC 9 cut(s) 6, 21, 71, 119, 465, 466, 467, 779, 993
BmrFI CCNGG 6 cut(s) 88, 115, 314, 1431, 1613, 2009
BmsI GCATC 4 cut(s) 696, 1456, 1888, 1975
BpiI GAAGAC 3 cut(s) 263, 795, 921
Bpu10I CCTNAGC 4 cut(s) 1068, 1074, 1587, 1887
Bpu1102I GCTNAGC 1 cut(s) 1998
BsaAI YACGTR 1 cut(s) 784
BsaHI GRCGYC 2 cut(s) 20, 110
BsaI GGTCTC 1 cut(s) 1731
BsaJI CCNNGG 8 cut(s) 65, 87, 155, 538, 1230, 1429, 2007, 2079
BsaWI WCCGGW 3 cut(s) 375, 676, 1115
BsaXI ACNNNNNCTCC 8 cut(s) 68, 98, 482, 512, 542, 572, 1828, 1858
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 120, 1245
Bse118I RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1722
Bse1I ACTGG 3 cut(s) 295, 500, 1214
Bse3DI GCAATG 2 cut(s) 1791, 2046
BseBI CCWGG 6 cut(s) 88, 115, 314, 1431, 1613, 2009
BseDI CCNNGG 8 cut(s) 65, 87, 155, 538, 1230, 1429, 2007, 2079
BseGI GGATG 1 cut(s) 1582
BseLI CCNNNNNNNGG 3 cut(s) 87, 120, 1245
BseMI GCAATG 2 cut(s) 1791, 2046
BseNI ACTGG 3 cut(s) 295, 500, 1214
BseRI GAGGAG 4 cut(s) 642, 645, 1056, 1836
BseSI GKGCMC 2 cut(s) 468, 1438
BseX3I CGGCCG 2 cut(s) 158, 275
BseYI CCCAGC 1 cut(s) 1460
BsgI GTGCAG 1 cut(s) 151
Bsh1236I CGCG 6 cut(s) 157, 412, 509, 540, 638, 1232
Bsh1285I CGRYCG 3 cut(s) 161, 278, 339
BshFI GGCC 7 cut(s) 144, 160, 277, 466, 579, 992, 1640
BshNI GGYRCC 1 cut(s) 19
BsiEI CGRYCG 3 cut(s) 161, 278, 339
BsiHKAI GWGCWC 1 cut(s) 1438
BsiHKCI CYCGRG 2 cut(s) 710, 1299
BslFI GGGAC 3 cut(s) 55, 104, 677
BslI CCNNNNNNNGG 3 cut(s) 87, 120, 1245
BsmAI GTCTC 7 cut(s) 627, 750, 1021, 1104, 1288, 1731, 1932
BsmBI CGTCTC 4 cut(s) 627, 750, 1021, 1932
BsmFI GGGAC 3 cut(s) 55, 104, 677
BsmI GAATGC 1 cut(s) 1789
BsnI GGCC 7 cut(s) 144, 160, 277, 466, 579, 992, 1640
Bso31I GGTCTC 1 cut(s) 1731
BsoBI CYCGRG 2 cut(s) 710, 1299
Bsp120I GGGCCC 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 468, 1438
Bsp1407I TGTACA 1 cut(s) 1821
Bsp1720I GCTNAGC 1 cut(s) 1998
Bsp19I CCATGG 1 cut(s) 2079
BspANI GGCC 7 cut(s) 144, 160, 277, 466, 579, 992, 1640
BspFNI CGCG 6 cut(s) 157, 412, 509, 540, 638, 1232
BspLI GGNNCC 9 cut(s) 6, 21, 71, 119, 465, 466, 467, 779, 993
BspMAI CTGCAG 3 cut(s) 1668, 1680, 2074
BspPI GGATC 5 cut(s) 837, 1019, 1026, 1262, 1283
BspQI GCTCTTC 1 cut(s) 843
BspT107I GGYRCC 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 1731
BsrBI CCGCTC 1 cut(s) 100
BsrDI GCAATG 2 cut(s) 1791, 2046
BsrFI RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1722
BsrGI TGTACA 1 cut(s) 1821
BsrI ACTGG 3 cut(s) 295, 500, 1214
BssAI RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1722
BssECI CCNNGG 8 cut(s) 65, 87, 155, 538, 1230, 1429, 2007, 2079
BssNAI GTATAC 1 cut(s) 2014
BssNI GRCGYC 2 cut(s) 20, 110
BssT1I CCWWGG 1 cut(s) 2079
Bst1107I GTATAC 1 cut(s) 2014
Bst2UI CCWGG 6 cut(s) 88, 115, 314, 1431, 1613, 2009
Bst4CI ACNGT 6 cut(s) 671, 812, 871, 1043, 1440, 1939
Bst6I CTCTTC 1 cut(s) 843
BstACI GRCGYC 2 cut(s) 20, 110
BstAPI GCANNNNNTGC 1 cut(s) 1675
BstAUI TGTACA 1 cut(s) 1821
BstBAI YACGTR 1 cut(s) 784
BstC8I GCNNGC 9 cut(s) 108, 231, 385, 408, 572, 756, 1347, 1629, 2004
BstDSI CCRYGG 4 cut(s) 155, 538, 1230, 2079
BstEII GGTNACC 1 cut(s) 1234
BstF5I GGATG 1 cut(s) 1582
BstFNI CGCG 6 cut(s) 157, 412, 509, 540, 638, 1232
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 5 cut(s) 22, 412, 511, 826, 973
BstMAI GTCTC 7 cut(s) 627, 750, 1021, 1104, 1288, 1731, 1932
BstMCI CGRYCG 3 cut(s) 161, 278, 339
BstNI CCWGG 6 cut(s) 88, 115, 314, 1431, 1613, 2009
BstNSI RCATGY 3 cut(s) 1447, 1627, 2006
BstPI GGTNACC 1 cut(s) 1234
BstSCI CCNGG 6 cut(s) 86, 113, 312, 1429, 1611, 2007
BstSFI CTRYAG 4 cut(s) 1664, 1676, 1836, 2070
BstSLI GKGCMC 2 cut(s) 468, 1438
BstUI CGCG 6 cut(s) 157, 412, 509, 540, 638, 1232
BstV2I GAAGAC 3 cut(s) 263, 795, 921
BstZ17I GTATAC 1 cut(s) 2014
BstZI CGGCCG 2 cut(s) 158, 275
BsuRI GGCC 7 cut(s) 144, 160, 277, 466, 579, 992, 1640
BtgI CCRYGG 4 cut(s) 155, 538, 1230, 2079
BtsCI GGATG 1 cut(s) 1582
BtsIMutI CAGTG 1 cut(s) 1152
Cac8I GCNNGC 9 cut(s) 108, 231, 385, 408, 572, 756, 1347, 1629, 2004
CaiI CAGNNNCTG 1 cut(s) 1958
CciNI GCGGCCGC 1 cut(s) 158
CfoI GCGC 5 cut(s) 22, 412, 511, 826, 973
Cfr10I RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1722
Cfr13I GGNCC 8 cut(s) 69, 235, 310, 464, 465, 778, 991, 1639
Cfr42I CCGCGG 3 cut(s) 158, 541, 1233
CseI GACGC 3 cut(s) 99, 268, 644
CsiI ACCWGGT 1 cut(s) 1611
Csp6I GTAC 4 cut(s) 1088, 1441, 1822, 2053
CviAII CATG 6 cut(s) 1444, 1624, 1994, 2003, 2062, 2080
CviQI GTAC 4 cut(s) 1088, 1441, 1822, 2053
DinI GGCGCC 1 cut(s) 21
DraIII CACNNNGTG 1 cut(s) 151
EaeI YGGCCR 3 cut(s) 142, 158, 275
EagI CGGCCG 2 cut(s) 158, 275
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
EciI GGCGGA 1 cut(s) 544
EclXI CGGCCG 2 cut(s) 158, 275
Eco130I CCWWGG 1 cut(s) 2079
Eco24I GRGCYC 1 cut(s) 468
Eco31I GGTCTC 1 cut(s) 1731
Eco32I GATATC 1 cut(s) 1049
Eco47I GGWCC 4 cut(s) 69, 235, 310, 778
Eco52I CGGCCG 2 cut(s) 158, 275
Eco57I CTGAAG 1 cut(s) 458
Eco72I CACGTG 1 cut(s) 784
Eco88I CYCGRG 2 cut(s) 710, 1299
Eco91I GGTNACC 1 cut(s) 1234
EcoO109I RGGNCCY 4 cut(s) 69, 310, 464, 465
EcoO65I GGTNACC 1 cut(s) 1234
EcoRII CCWGG 6 cut(s) 86, 113, 312, 1429, 1611, 2007
EcoRV GATATC 1 cut(s) 1049
EcoT14I CCWWGG 1 cut(s) 2079
EcoT22I ATGCAT 1 cut(s) 1449
EcoT38I GRGCYC 1 cut(s) 468
EgeI GGCGCC 1 cut(s) 21
EheI GGCGCC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 2079
Esp3I CGTCTC 4 cut(s) 627, 750, 1021, 1932
FaeI CATG 6 cut(s) 1447, 1627, 1997, 2006, 2065, 2083
FaqI GGGAC 3 cut(s) 55, 104, 677
FatI CATG 6 cut(s) 1443, 1623, 1993, 2002, 2061, 2079
FauI CCCGC 5 cut(s) 105, 111, 596, 1237, 2044
FbaI TGATCA 2 cut(s) 1156, 1357
FblI GTMKAC 1 cut(s) 2013
FokI GGATG 1 cut(s) 1569
FriOI GRGCYC 1 cut(s) 468
FspBI CTAG 4 cut(s) 53, 581, 1719, 2030
GlaI GCGC 5 cut(s) 21, 411, 510, 825, 972
GsaI CCCAGC 1 cut(s) 1464
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 7 cut(s) 144, 160, 277, 466, 579, 992, 1640
HgaI GACGC 3 cut(s) 99, 268, 644
HhaI GCGC 5 cut(s) 22, 412, 511, 826, 973
Hin1I GRCGYC 2 cut(s) 20, 110
Hin1II CATG 6 cut(s) 1447, 1627, 1997, 2006, 2065, 2083
Hin6I GCGC 5 cut(s) 20, 410, 509, 824, 971
HinP1I GCGC 5 cut(s) 20, 410, 509, 824, 971
HincII GTYRAC 2 cut(s) 565, 735
HindII GTYRAC 2 cut(s) 565, 735
HindIII AAGCTT 1 cut(s) 1644
HphI GGTGA 4 cut(s) 924, 988, 1445, 1913
Hpy188III TCNNGA 6 cut(s) 31, 241, 624, 712, 1208, 1325
HpyAV CCTTC 2 cut(s) 829, 972
HpyCH4III ACNGT 6 cut(s) 671, 812, 871, 1043, 1440, 1939
HpyCH4IV ACGT 3 cut(s) 183, 681, 783
HpySE526I ACGT 3 cut(s) 183, 681, 783
Hsp92I GRCGYC 2 cut(s) 20, 110
Hsp92II CATG 6 cut(s) 1447, 1627, 1997, 2006, 2065, 2083
HspAI GCGC 5 cut(s) 20, 410, 509, 824, 971
KasI GGCGCC 1 cut(s) 19
KroI GCCGGC 2 cut(s) 106, 406
KroNI GCCGGC 2 cut(s) 108, 408
Ksp22I TGATCA 2 cut(s) 1156, 1357
KspI CCGCGG 3 cut(s) 158, 541, 1233
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 5 cut(s) 4, 105, 123, 801, 1849
LweI GCATC 4 cut(s) 696, 1456, 1888, 1975
MabI ACCWGGT 1 cut(s) 1611
MaeI CTAG 4 cut(s) 53, 581, 1719, 2030
MaeII ACGT 3 cut(s) 183, 681, 783
MaeIII GTNAC 5 cut(s) 74, 331, 806, 1234, 1904
MbiI CCGCTC 1 cut(s) 100
MboII GAAGA 7 cut(s) 268, 493, 800, 860, 921, 975, 978
MhlI GDGCHC 2 cut(s) 468, 1438
Mly113I GGCGCC 1 cut(s) 20
MlyI GAGTC 5 cut(s) 28, 41, 77, 311, 545
MmeI TCCRAC 4 cut(s) 468, 504, 573, 1707
Mph1103I ATGCAT 1 cut(s) 1449
MreI CGCCGGCG 1 cut(s) 106
MroNI GCCGGC 2 cut(s) 106, 406
MseI TTAA 1 cut(s) 1278
MslI CAYNNNNRTG 1 cut(s) 1431
MspA1I CMGCKG 9 cut(s) 157, 436, 540, 795, 1232, 1675, 1841, 2069, 2075
MspR9I CCNGG 6 cut(s) 88, 115, 314, 1431, 1613, 2009
Mva1269I GAATGC 1 cut(s) 1789
MvaI CCWGG 6 cut(s) 88, 115, 314, 1431, 1613, 2009
MvnI CGCG 6 cut(s) 157, 412, 509, 540, 638, 1232
NaeI GCCGGC 2 cut(s) 108, 408
NarI GGCGCC 1 cut(s) 20
NcoI CCATGG 1 cut(s) 2079
NgoMIV GCCGGC 2 cut(s) 106, 406
NlaIII CATG 6 cut(s) 1447, 1627, 1997, 2006, 2065, 2083
NlaIV GGNNCC 9 cut(s) 6, 21, 71, 119, 465, 466, 467, 779, 993
NmeAIII GCCGAG 3 cut(s) 90, 327, 555
NmuCI GTSAC 2 cut(s) 331, 806
NotI GCGGCCGC 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 1449
NspI RCATGY 3 cut(s) 1447, 1627, 2006
OliI CACNNNNGTG 1 cut(s) 1431
PaeI GCATGC 1 cut(s) 2006
PaeR7I CTCGAG 1 cut(s) 710
PciSI GCTCTTC 1 cut(s) 843
PcsI WCGNNNNNNNCGW 6 cut(s) 56, 189, 455, 582, 746, 1032
PctI GAATGC 1 cut(s) 1789
PdiI GCCGGC 2 cut(s) 108, 408
PflFI GACNNNGTC 1 cut(s) 484
PleI GAGTC 5 cut(s) 28, 41, 77, 311, 545
PluTI GGCGCC 1 cut(s) 23
PmaCI CACGTG 1 cut(s) 784
PmlI CACGTG 1 cut(s) 784
PpsI GAGTC 5 cut(s) 28, 41, 77, 311, 545
Ppu21I YACGTR 1 cut(s) 784
PpuMI RGGWCCY 2 cut(s) 69, 310
Psp5II RGGWCCY 2 cut(s) 69, 310
Psp6I CCWGG 6 cut(s) 86, 113, 312, 1429, 1611, 2007
PspCI CACGTG 1 cut(s) 784
PspEI GGTNACC 1 cut(s) 1234
PspFI CCCAGC 1 cut(s) 1460
PspGI CCWGG 6 cut(s) 86, 113, 312, 1429, 1611, 2007
PspN4I GGNNCC 9 cut(s) 6, 21, 71, 119, 465, 466, 467, 779, 993
PspOMI GGGCCC 1 cut(s) 464
PspPI GGNCC 8 cut(s) 69, 235, 310, 464, 465, 778, 991, 1639
PspPPI RGGWCCY 2 cut(s) 69, 310
PstI CTGCAG 3 cut(s) 1668, 1680, 2074
PstNI CAGNNNCTG 1 cut(s) 1958
PsyI GACNNNGTC 1 cut(s) 484
PvuII CAGCTG 3 cut(s) 1841, 2069, 2075
RsaI GTAC 4 cut(s) 1089, 1442, 1823, 2054
RsaNI GTAC 4 cut(s) 1088, 1441, 1822, 2053
RseI CAYNNNNRTG 1 cut(s) 1431
SacII CCGCGG 3 cut(s) 158, 541, 1233
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 1 cut(s) 1278
Sau96I GGNCC 8 cut(s) 69, 235, 310, 464, 465, 778, 991, 1639
SchI GAGTC 5 cut(s) 28, 41, 77, 311, 545
ScrFI CCNGG 6 cut(s) 88, 115, 314, 1431, 1613, 2009
SduI GDGCHC 2 cut(s) 468, 1438
SexAI ACCWGGT 1 cut(s) 1611
SfaNI GCATC 4 cut(s) 696, 1456, 1888, 1975
SfcI CTRYAG 4 cut(s) 1664, 1676, 1836, 2070
SfoI GGCGCC 1 cut(s) 21
Sfr274I CTCGAG 1 cut(s) 710
Sfr303I CCGCGG 3 cut(s) 158, 541, 1233
SgrAI CRCCGGYG 3 cut(s) 10, 106, 973
SgrBI CCGCGG 3 cut(s) 158, 541, 1233
SinI GGWCC 4 cut(s) 69, 235, 310, 778
SlaI CTCGAG 1 cut(s) 710
SmiMI CAYNNNNRTG 1 cut(s) 1431
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SphI GCATGC 1 cut(s) 2006
SspDI GGCGCC 1 cut(s) 19
SspMI CTAG 4 cut(s) 53, 581, 1719, 2030
StyD4I CCNGG 6 cut(s) 86, 113, 312, 1429, 1611, 2007
StyI CCWWGG 1 cut(s) 2079
TaaI ACNGT 6 cut(s) 671, 812, 871, 1043, 1440, 1939
TaiI ACGT 3 cut(s) 186, 684, 786
TaqI TCGA 8 cut(s) 199, 242, 363, 458, 471, 623, 711, 1593
TaqII GACCGA 1 cut(s) 353
TatI WGTACW 2 cut(s) 1440, 1821
Tru1I TTAA 1 cut(s) 1278
Tru9I TTAA 1 cut(s) 1278
TscAI CASTG 1 cut(s) 1152
TseFI GTSAC 2 cut(s) 331, 806
Tsp45I GTSAC 2 cut(s) 331, 806
TspDTI ATGAA 2 cut(s) 1907, 1989
TspGWI ACGGA 3 cut(s) 319, 550, 738
TspRI CASTG 1 cut(s) 1152
Tth111I GACNNNGTC 1 cut(s) 484
VneI GTGCAC 1 cut(s) 1434
VpaK11BI GGWCC 4 cut(s) 69, 235, 310, 778
XapI RAATTY 2 cut(s) 760, 1119
XceI RCATGY 3 cut(s) 1447, 1627, 2006
XhoI CTCGAG 1 cut(s) 710
XmiI GTMKAC 1 cut(s) 2013
XspI CTAG 4 cut(s) 53, 581, 1719, 2030
Zsp2I ATGCAT 1 cut(s) 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.