RLG00000006680

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011786
Physical Location & Seq
Reverse (-)
9586778 .. 9589142
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006680

Sequence Viewer

Length: 2037 bp
ATGGAGCCACCGGCGGCGACGCCGCCACTACAGACTCACTACCCTGACTCGCTCGACTCGTCGCCGCGCTCCCGCAACACCGACTCCTGGGACGACCCGCTCCCGCCGGCGTCCAGGCTCCGGCTGATGTGCAGCTACGGCGGCCACATCGTGCCGCGGCCGCACGACAAGTCGTTGTGCTACGTCGGCGGCGACACTCGAATCGTCGTCGTGGACAGGAACACTTCGCTTGCGGACCTCTCGAATCGTCTGGCGAAGACGCTTTTGAATAACCGGCCGTTCACGCTGAAATACCAGTTACCGAGCGAGGACCTGGACTCGTTGATCTCGGTGACGACCGACGAGGATTTGGATAATATGATCGACGAGTTTGACCGGACGGCGAGCCACAATTCGTCGGCGAAGCCGGCGCGGATTCGGCTGTTTCTGTTTCCGCTGAAGCCGGATTCGTCGCAGTCGATGGGGGCCCTCGATATGCCGACCAAGTCGGAGGAGTGGTTCCTCAACGCCCTCAACGGCTCGTCGGCGATTCTCAACCGCGGCTTCTCCGACTCCGCCTCCGTCAACTGCTTGCTCGGCCTAGACGACGACGGCGGCGGCGGCGCGGCGAACAATTCGGATTCGAGAGGAGGAGACGCGGAGGCTTCTGCGGCGGCGAATTGCAAGAACGGTAAACCGGACGTTCACTCTGTCCCCGATTCGCCGATGCTCGAGAACTCGTCGTCGTTTGGGTCAACATCGTCGTCTCCGTCGCTGGCGAATTTGCCTCCAATTCGGGTCCACGTGGAAGACAGCGGTGGGAGCAGTCACGGTGGGAATAGAGCGCAGGATCAGAAGGTTGGGATTGAAGAGCAGTTTGCTCAGATGACGGTGGGTTTGGTTGGGCAGCAGCAGAAGCAAGACGATAGCGGCGGCTTTGTGGTGCTGTCTTCACCGCCGCCGTTGCCGACTACTATTGTGCCTTCCTCTGCGCCGGTGAGTTCTTCTTCGGCCCCTGATTACCTGAATCGGGTCGTCTCCGATGACGAACGATCCGATCACGGTGGATATCGGAAACCGCTTCCTCCTCAGCCTCAGCAACAGACTCTACCGCCTCAGTCTCAGCCCAAATCAACCGGAATTTTTGATTTGCCGTCGCCAGATTCAGTGTCAAGTGATCATAGTTTATCAAATGCTGCCATATCTCGGCCAAAACCTGTAATTTATCAAGAACCAGTTGCTCAAATACCCGCGGTAACCCCCACAAGGTTTCCTGCTAACCTTGTTGACCCGAAAGTTAATGTCTCCGATCCAAACACTAGGGTTCAGTTGCAACAACAGGTTCAGGATTCCGGGTATGTATTGCAAGCCCAATATGATCAACAACTACAACAGCAGCAGCAACTACTACAACAACAACAACAACTACAACAACAGCAACAATTTATACACCCTGGTGCACATTACATGCATCATCACCCTGCTGGGTCTGTGCCAATTCAGGCATACTACCCTGTATATCCTTCTCAGCAGCAGCACCAGCAGCAACAGCACCAGCAGCAACAGCAACACCACCATCATCCTCAGCTCGATCAGCAGCAGCAATACCAGGTTTATTACATGCCCGCAAGACAGGCCCAACCTTACAGCAACTTGCCCCTGCAGCAACCGCTGCAGTCCAACATTAGTGAAGCTGCTGCTGCTACTATTGCTTCTAGCCGGTCTCAACCGCCTCCCAATCCAATGCTATCTCCTACCGCAGCTTACAGCCAGATAAGGAATGCCCCCATTGCGAAACCCGAAATTGCTGCTGGTGTGTACAGGACAACAACTACAGCTGCTCCTCCATCTCTGGTTCAAGTTCCTCCTACTCAGCATCAGCCTCAGCAACAATATGTTGGTTACGCACAGCATGCCCAGGTATACTATACTCAGCCTCTAGCACCCGCAATGACTTCTCAGTACCAAACCATGACAGCCGCAGCTGCCATGGGGCTGCCGGAAGTGTCAACTCAGCTTCCTAATGACAACATCAAGCAGCAGCAGCAGCAGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

679

Amino Acids

73.92

Weight (kDa)

5.71

Isoelectric Point (pI)

71.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 55 - 145 1.9e-16 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011786)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01190
fragaria_vesca FvH4_4g26650 FvH4_4g26650 FvH4_4g26650
malus_domestica MD13G1034900.v1.1 MD16G1036800.v1.1
prunus_persica Prupe.1G317300_v2.0.a1
pyrus_communis pycom13g03050 pycom16g03170
rosa_chinensis RchiOBHm_Chr4g0434361
rosa_laevigata RLG00000006680
rosa_multiflora Rmu_sc0016328.1_g000003
rosa_roxburghii Rroxscaffold_5G00375720
rosa_rugosa Rorug04G0276300
rosa_samantha Rh4AG331400 Rh4BG339300 Rh4CG354400 Rh4DG334400
rosa_wichuraiana Rw4G028740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 1902
AccII CGCG 7 cut(s) 67, 157, 412, 540, 605, 638, 1232
AclWI GGATC 3 cut(s) 837, 1026, 1283
AcoI YGGCCR 4 cut(s) 142, 158, 275, 1187
AcsI RAATTY 2 cut(s) 760, 1119
AcuI CTGAAG 1 cut(s) 458
AcvI CACGTG 1 cut(s) 784
AcyI GRCGYC 2 cut(s) 20, 110
AdeI CACNNNGTG 1 cut(s) 151
AfaI GTAC 2 cut(s) 1799, 1943
AfiI CCNNNNNNNGG 5 cut(s) 87, 120, 1009, 1185, 1245
AgsI TTSAA 3 cut(s) 268, 848, 1838
AjnI CCWGG 6 cut(s) 86, 113, 312, 1432, 1587, 1896
AleI CACNNNNGTG 1 cut(s) 1434
AloI GAACNNNNNNTCC 2 cut(s) 482, 514
AluBI AGCT 7 cut(s) 135, 1567, 1673, 1742, 1817, 1964, 1996
AluI AGCT 7 cut(s) 135, 1567, 1673, 1742, 1817, 1964, 1996
Alw21I GWGCWC 1 cut(s) 1441
Alw26I GTCTC 6 cut(s) 627, 750, 1021, 1104, 1288, 1707
Alw44I GTGCAC 1 cut(s) 1437
AlwI GGATC 3 cut(s) 837, 1026, 1283
Ama87I CYCGRG 1 cut(s) 710
AoxI GGCC 8 cut(s) 142, 158, 275, 465, 577, 990, 1187, 1614
ApaI GGGCCC 1 cut(s) 469
ApaLI GTGCAC 1 cut(s) 1437
ApoI RAATTY 2 cut(s) 760, 1119
ArsI GACNNNNNNTTYG 2 cut(s) 859, 891
AspLEI GCGC 5 cut(s) 69, 412, 605, 826, 973
AspS9I GGNCC 7 cut(s) 235, 310, 465, 466, 778, 991, 1615
AsuC2I CCSGG 1 cut(s) 1333
AsuHPI GGTGA 4 cut(s) 343, 924, 988, 1448
AvaI CYCGRG 1 cut(s) 710
AvaII GGWCC 3 cut(s) 235, 310, 778
BaeGI GKGCMC 2 cut(s) 469, 1441
BanII GRGCYC 1 cut(s) 469
BbrPI CACGTG 1 cut(s) 784
BbsI GAAGAC 3 cut(s) 263, 795, 921
Bbv12I GWGCWC 1 cut(s) 1441
BbvCI CCTCAGC 4 cut(s) 1068, 1074, 1563, 1863
BccI CCATC 3 cut(s) 454, 1563, 1834
BceAI ACGGC 7 cut(s) 154, 262, 396, 532, 607, 925, 1117
BcgI CGANNNNNNTGC 2 cut(s) 1769, 1803
BciT130I CCWGG 6 cut(s) 88, 115, 314, 1434, 1589, 1898
BclI TGATCA 2 cut(s) 1156, 1357
BcnI CCSGG 1 cut(s) 1333
BcoDI GTCTC 6 cut(s) 627, 750, 1021, 1104, 1288, 1707
BfaI CTAG 4 cut(s) 581, 1299, 1695, 1919
BfmI CTRYAG 4 cut(s) 29, 1640, 1652, 1812
Bme1390I CCNGG 7 cut(s) 88, 115, 314, 1333, 1434, 1589, 1898
Bme18I GGWCC 3 cut(s) 235, 310, 778
BmeT110I CYCGRG 1 cut(s) 710
BmgT120I GGNCC 7 cut(s) 235, 310, 465, 466, 778, 991, 1615
BmiI GGNNCC 7 cut(s) 6, 119, 466, 467, 500, 779, 993
BmrFI CCNGG 7 cut(s) 88, 115, 314, 1333, 1434, 1589, 1898
BmsI GCATC 3 cut(s) 696, 1459, 1864
BpiI GAAGAC 3 cut(s) 263, 795, 921
Bpu10I CCTNAGC 4 cut(s) 1068, 1074, 1563, 1863
BpuMI CCSGG 1 cut(s) 1333
BsaAI YACGTR 1 cut(s) 784
BsaHI GRCGYC 2 cut(s) 20, 110
BsaI GGTCTC 1 cut(s) 1707
BsaJI CCNNGG 7 cut(s) 87, 155, 538, 1230, 1432, 1896, 1968
BsaWI WCCGGW 3 cut(s) 375, 676, 1115
BsaXI ACNNNNNCTCC 8 cut(s) 68, 98, 482, 512, 542, 572, 1804, 1834
Bsc4I CCNNNNNNNGG 5 cut(s) 87, 120, 1009, 1185, 1245
Bse118I RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1698
Bse1I ACTGG 2 cut(s) 295, 1214
Bse3DI GCAATG 2 cut(s) 1767, 1935
BseBI CCWGG 6 cut(s) 88, 115, 314, 1434, 1589, 1898
BseDI CCNNGG 7 cut(s) 87, 155, 538, 1230, 1432, 1896, 1968
BseGI GGATG 1 cut(s) 1558
BseLI CCNNNNNNNGG 5 cut(s) 87, 120, 1009, 1185, 1245
BseMI GCAATG 2 cut(s) 1767, 1935
BseNI ACTGG 2 cut(s) 295, 1214
BseRI GAGGAG 5 cut(s) 506, 642, 645, 1056, 1812
BseSI GKGCMC 2 cut(s) 469, 1441
BseX3I CGGCCG 2 cut(s) 158, 275
BseYI CCCAGC 1 cut(s) 1463
BsgI GTGCAG 1 cut(s) 151
Bsh1236I CGCG 7 cut(s) 67, 157, 412, 540, 605, 638, 1232
Bsh1285I CGRYCG 3 cut(s) 161, 278, 339
BshFI GGCC 8 cut(s) 144, 160, 277, 467, 579, 992, 1189, 1616
BsiEI CGRYCG 3 cut(s) 161, 278, 339
BsiHKAI GWGCWC 1 cut(s) 1441
BsiHKCI CYCGRG 1 cut(s) 710
BslFI GGGAC 2 cut(s) 104, 677
BslI CCNNNNNNNGG 5 cut(s) 87, 120, 1009, 1185, 1245
BsmAI GTCTC 6 cut(s) 627, 750, 1021, 1104, 1288, 1707
BsmBI CGTCTC 3 cut(s) 627, 750, 1021
BsmFI GGGAC 2 cut(s) 104, 677
BsmI GAATGC 1 cut(s) 1765
BsnI GGCC 8 cut(s) 144, 160, 277, 467, 579, 992, 1189, 1616
Bso31I GGTCTC 1 cut(s) 1707
BsoBI CYCGRG 1 cut(s) 710
Bsp120I GGGCCC 1 cut(s) 465
Bsp1286I GDGCHC 2 cut(s) 469, 1441
Bsp1407I TGTACA 1 cut(s) 1797
Bsp143I GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1156, 1288, 1357, 1570
Bsp19I CCATGG 1 cut(s) 1968
BspANI GGCC 8 cut(s) 144, 160, 277, 467, 579, 992, 1189, 1616
BspFNI CGCG 7 cut(s) 67, 157, 412, 540, 605, 638, 1232
BspLI GGNNCC 7 cut(s) 6, 119, 466, 467, 500, 779, 993
BspMAI CTGCAG 2 cut(s) 1644, 1656
BspPI GGATC 3 cut(s) 837, 1026, 1283
BspQI GCTCTTC 1 cut(s) 843
BspTNI GGTCTC 1 cut(s) 1707
BsrBI CCGCTC 1 cut(s) 100
BsrDI GCAATG 2 cut(s) 1767, 1935
BsrFI RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1698
BsrGI TGTACA 1 cut(s) 1797
BsrI ACTGG 2 cut(s) 295, 1214
BssAI RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1698
BssECI CCNNGG 7 cut(s) 87, 155, 538, 1230, 1432, 1896, 1968
BssMI GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1156, 1288, 1357, 1570
BssNAI GTATAC 1 cut(s) 1903
BssNI GRCGYC 2 cut(s) 20, 110
BssT1I CCWWGG 1 cut(s) 1968
Bst1107I GTATAC 1 cut(s) 1903
Bst2UI CCWGG 6 cut(s) 88, 115, 314, 1434, 1589, 1898
Bst4CI ACNGT 4 cut(s) 671, 812, 871, 1043
Bst6I CTCTTC 1 cut(s) 843
BstACI GRCGYC 2 cut(s) 20, 110
BstAPI GCANNNNNTGC 2 cut(s) 1651, 1892
BstAUI TGTACA 1 cut(s) 1797
BstBAI YACGTR 1 cut(s) 784
BstC8I GCNNGC 9 cut(s) 108, 231, 385, 408, 572, 756, 1347, 1605, 1893
BstDSI CCRYGG 4 cut(s) 155, 538, 1230, 1968
BstEII GGTNACC 1 cut(s) 1234
BstF5I GGATG 1 cut(s) 1558
BstFNI CGCG 7 cut(s) 67, 157, 412, 540, 605, 638, 1232
BstHHI GCGC 5 cut(s) 69, 412, 605, 826, 973
BstKTI GATC 9 cut(s) 327, 363, 832, 1034, 1039, 1159, 1291, 1360, 1573
BstMAI GTCTC 6 cut(s) 627, 750, 1021, 1104, 1288, 1707
BstMBI GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1156, 1288, 1357, 1570
BstMCI CGRYCG 3 cut(s) 161, 278, 339
BstNI CCWGG 6 cut(s) 88, 115, 314, 1434, 1589, 1898
BstNSI RCATGY 3 cut(s) 1450, 1603, 1895
BstPI GGTNACC 1 cut(s) 1234
BstSCI CCNGG 7 cut(s) 86, 113, 312, 1331, 1432, 1587, 1896
BstSFI CTRYAG 4 cut(s) 29, 1640, 1652, 1812
BstSLI GKGCMC 2 cut(s) 469, 1441
BstUI CGCG 7 cut(s) 67, 157, 412, 540, 605, 638, 1232
BstV2I GAAGAC 3 cut(s) 263, 795, 921
BstZ17I GTATAC 1 cut(s) 1903
BstZI CGGCCG 2 cut(s) 158, 275
BsuRI GGCC 8 cut(s) 144, 160, 277, 467, 579, 992, 1189, 1616
BtgI CCRYGG 4 cut(s) 155, 538, 1230, 1968
BtsCI GGATG 1 cut(s) 1558
BtsIMutI CAGTG 1 cut(s) 1152
Cac8I GCNNGC 9 cut(s) 108, 231, 385, 408, 572, 756, 1347, 1605, 1893
CciNI GCGGCCGC 1 cut(s) 158
CfoI GCGC 5 cut(s) 69, 412, 605, 826, 973
Cfr10I RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1698
Cfr13I GGNCC 7 cut(s) 235, 310, 465, 466, 778, 991, 1615
Cfr42I CCGCGG 3 cut(s) 158, 541, 1233
CseI GACGC 4 cut(s) 28, 99, 268, 644
CsiI ACCWGGT 1 cut(s) 1587
Csp6I GTAC 2 cut(s) 1798, 1942
CviAII CATG 5 cut(s) 1447, 1600, 1892, 1951, 1969
CviQI GTAC 2 cut(s) 1798, 1942
DpnI GATC 9 cut(s) 326, 362, 831, 1033, 1038, 1158, 1290, 1359, 1572
DpnII GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1156, 1288, 1357, 1570
DraIII CACNNNGTG 1 cut(s) 151
EaeI YGGCCR 4 cut(s) 142, 158, 275, 1187
EagI CGGCCG 2 cut(s) 158, 275
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
EciI GGCGGA 1 cut(s) 544
EclXI CGGCCG 2 cut(s) 158, 275
Eco130I CCWWGG 1 cut(s) 1968
Eco24I GRGCYC 1 cut(s) 469
Eco31I GGTCTC 1 cut(s) 1707
Eco32I GATATC 1 cut(s) 1049
Eco47I GGWCC 3 cut(s) 235, 310, 778
Eco52I CGGCCG 2 cut(s) 158, 275
Eco57I CTGAAG 1 cut(s) 458
Eco72I CACGTG 1 cut(s) 784
Eco88I CYCGRG 1 cut(s) 710
Eco91I GGTNACC 1 cut(s) 1234
EcoO109I RGGNCCY 3 cut(s) 310, 465, 466
EcoO65I GGTNACC 1 cut(s) 1234
EcoRII CCWGG 6 cut(s) 86, 113, 312, 1432, 1587, 1896
EcoRV GATATC 1 cut(s) 1049
EcoT14I CCWWGG 1 cut(s) 1968
EcoT22I ATGCAT 1 cut(s) 1452
EcoT38I GRGCYC 1 cut(s) 469
ErhI CCWWGG 1 cut(s) 1968
Esp3I CGTCTC 3 cut(s) 627, 750, 1021
FaeI CATG 5 cut(s) 1450, 1603, 1895, 1954, 1972
FaqI GGGAC 2 cut(s) 104, 677
FatI CATG 5 cut(s) 1446, 1599, 1891, 1950, 1968
FauI CCCGC 6 cut(s) 80, 105, 111, 1237, 1612, 1933
FbaI TGATCA 2 cut(s) 1156, 1357
FblI GTMKAC 1 cut(s) 1902
FokI GGATG 1 cut(s) 1545
FriOI GRGCYC 1 cut(s) 469
FspBI CTAG 4 cut(s) 581, 1299, 1695, 1919
GlaI GCGC 5 cut(s) 68, 411, 604, 825, 972
GsaI CCCAGC 1 cut(s) 1467
HaeIII GGCC 8 cut(s) 144, 160, 277, 467, 579, 992, 1189, 1616
HgaI GACGC 4 cut(s) 28, 99, 268, 644
HhaI GCGC 5 cut(s) 69, 412, 605, 826, 973
Hin1I GRCGYC 2 cut(s) 20, 110
Hin1II CATG 5 cut(s) 1450, 1603, 1895, 1954, 1972
Hin6I GCGC 5 cut(s) 67, 410, 603, 824, 971
HinP1I GCGC 5 cut(s) 67, 410, 603, 824, 971
HincII GTYRAC 4 cut(s) 565, 735, 1267, 1989
HindII GTYRAC 4 cut(s) 565, 735, 1267, 1989
HphI GGTGA 4 cut(s) 343, 924, 988, 1448
Hpy188I TCNGA 9 cut(s) 490, 550, 619, 834, 864, 1021, 1036, 1053, 1288
Hpy188III TCNNGA 5 cut(s) 241, 624, 712, 1208, 1325
HpyAV CCTTC 3 cut(s) 829, 972, 1512
HpyCH4III ACNGT 4 cut(s) 671, 812, 871, 1043
HpyCH4IV ACGT 3 cut(s) 183, 681, 783
HpyCH4V TGCA 8 cut(s) 132, 663, 1312, 1345, 1439, 1450, 1642, 1654
HpySE526I ACGT 3 cut(s) 183, 681, 783
Hsp92I GRCGYC 2 cut(s) 20, 110
Hsp92II CATG 5 cut(s) 1450, 1603, 1895, 1954, 1972
HspAI GCGC 5 cut(s) 67, 410, 603, 824, 971
KroI GCCGGC 2 cut(s) 106, 406
KroNI GCCGGC 2 cut(s) 108, 408
Ksp22I TGATCA 2 cut(s) 1156, 1357
KspI CCGCGG 3 cut(s) 158, 541, 1233
Kzo9I GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1156, 1288, 1357, 1570
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 6 cut(s) 4, 74, 105, 123, 801, 1825
LweI GCATC 3 cut(s) 696, 1459, 1864
MabI ACCWGGT 1 cut(s) 1587
MaeI CTAG 4 cut(s) 581, 1299, 1695, 1919
MaeII ACGT 3 cut(s) 183, 681, 783
MaeIII GTNAC 5 cut(s) 297, 331, 806, 1234, 1880
MalI GATC 9 cut(s) 326, 362, 831, 1033, 1038, 1158, 1290, 1359, 1572
MbiI CCGCTC 1 cut(s) 100
MboI GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1156, 1288, 1357, 1570
MboII GAAGA 6 cut(s) 268, 800, 860, 921, 975, 978
MhlI GDGCHC 2 cut(s) 469, 1441
MlyI GAGTC 7 cut(s) 28, 41, 50, 77, 311, 545, 1078
MmeI TCCRAC 3 cut(s) 468, 573, 1683
Mph1103I ATGCAT 1 cut(s) 1452
MreI CGCCGGCG 1 cut(s) 106
MroNI GCCGGC 2 cut(s) 106, 406
MseI TTAA 1 cut(s) 1278
MslI CAYNNNNRTG 1 cut(s) 1434
MspA1I CMGCKG 8 cut(s) 157, 436, 540, 795, 1232, 1651, 1817, 1964
MspR9I CCNGG 7 cut(s) 88, 115, 314, 1333, 1434, 1589, 1898
Mva1269I GAATGC 1 cut(s) 1765
MvaI CCWGG 6 cut(s) 88, 115, 314, 1434, 1589, 1898
MvnI CGCG 7 cut(s) 67, 157, 412, 540, 605, 638, 1232
NaeI GCCGGC 2 cut(s) 108, 408
NciI CCSGG 1 cut(s) 1333
NcoI CCATGG 1 cut(s) 1968
NdeII GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1156, 1288, 1357, 1570
NgoMIV GCCGGC 2 cut(s) 106, 406
NlaIII CATG 5 cut(s) 1450, 1603, 1895, 1954, 1972
NlaIV GGNNCC 7 cut(s) 6, 119, 466, 467, 500, 779, 993
NmeAIII GCCGAG 2 cut(s) 555, 1165
NmuCI GTSAC 2 cut(s) 331, 806
NotI GCGGCCGC 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 1452
NspI RCATGY 3 cut(s) 1450, 1603, 1895
OliI CACNNNNGTG 1 cut(s) 1434
PaeI GCATGC 1 cut(s) 1895
PaeR7I CTCGAG 1 cut(s) 710
PciSI GCTCTTC 1 cut(s) 843
PcsI WCGNNNNNNNCGW 6 cut(s) 56, 189, 455, 582, 746, 1032
PctI GAATGC 1 cut(s) 1765
PdiI GCCGGC 2 cut(s) 108, 408
PflFI GACNNNGTC 1 cut(s) 484
PleI GAGTC 7 cut(s) 28, 41, 50, 77, 311, 545, 1078
PmaCI CACGTG 1 cut(s) 784
PmlI CACGTG 1 cut(s) 784
PpsI GAGTC 7 cut(s) 28, 41, 50, 77, 311, 545, 1078
Ppu21I YACGTR 1 cut(s) 784
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 6 cut(s) 86, 113, 312, 1432, 1587, 1896
PspCI CACGTG 1 cut(s) 784
PspEI GGTNACC 1 cut(s) 1234
PspFI CCCAGC 1 cut(s) 1463
PspGI CCWGG 6 cut(s) 86, 113, 312, 1432, 1587, 1896
PspN4I GGNNCC 7 cut(s) 6, 119, 466, 467, 500, 779, 993
PspOMI GGGCCC 1 cut(s) 465
PspPI GGNCC 7 cut(s) 235, 310, 465, 466, 778, 991, 1615
PspPPI RGGWCCY 1 cut(s) 310
PstI CTGCAG 2 cut(s) 1644, 1656
PsyI GACNNNGTC 1 cut(s) 484
PvuII CAGCTG 2 cut(s) 1817, 1964
RsaI GTAC 2 cut(s) 1799, 1943
RsaNI GTAC 2 cut(s) 1798, 1942
RseI CAYNNNNRTG 1 cut(s) 1434
SacII CCGCGG 3 cut(s) 158, 541, 1233
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 1 cut(s) 1278
Sau3AI GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1156, 1288, 1357, 1570
Sau96I GGNCC 7 cut(s) 235, 310, 465, 466, 778, 991, 1615
SchI GAGTC 7 cut(s) 28, 41, 50, 77, 311, 545, 1078
ScrFI CCNGG 7 cut(s) 88, 115, 314, 1333, 1434, 1589, 1898
SduI GDGCHC 2 cut(s) 469, 1441
SexAI ACCWGGT 1 cut(s) 1587
SfaNI GCATC 3 cut(s) 696, 1459, 1864
SfcI CTRYAG 4 cut(s) 29, 1640, 1652, 1812
Sfr274I CTCGAG 1 cut(s) 710
Sfr303I CCGCGG 3 cut(s) 158, 541, 1233
SgrAI CRCCGGYG 3 cut(s) 10, 106, 973
SgrBI CCGCGG 3 cut(s) 158, 541, 1233
SinI GGWCC 3 cut(s) 235, 310, 778
SlaI CTCGAG 1 cut(s) 710
SmiMI CAYNNNNRTG 1 cut(s) 1434
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SphI GCATGC 1 cut(s) 1895
SspMI CTAG 4 cut(s) 581, 1299, 1695, 1919
StyD4I CCNGG 7 cut(s) 86, 113, 312, 1331, 1432, 1587, 1896
StyI CCWWGG 1 cut(s) 1968
TaaI ACNGT 4 cut(s) 671, 812, 871, 1043
TaiI ACGT 3 cut(s) 186, 684, 786
TaqI TCGA 9 cut(s) 54, 199, 242, 363, 458, 471, 623, 711, 1569
TaqII GACCGA 1 cut(s) 353
TatI WGTACW 1 cut(s) 1797
Tru1I TTAA 1 cut(s) 1278
Tru9I TTAA 1 cut(s) 1278
TscAI CASTG 1 cut(s) 1152
TseFI GTSAC 2 cut(s) 331, 806
Tsp45I GTSAC 2 cut(s) 331, 806
TspGWI ACGGA 2 cut(s) 550, 738
TspRI CASTG 1 cut(s) 1152
Tth111I GACNNNGTC 1 cut(s) 484
VneI GTGCAC 1 cut(s) 1437
VpaK11BI GGWCC 3 cut(s) 235, 310, 778
XapI RAATTY 2 cut(s) 760, 1119
XceI RCATGY 3 cut(s) 1450, 1603, 1895
XhoI CTCGAG 1 cut(s) 710
XmiI GTMKAC 1 cut(s) 1902
XspI CTAG 4 cut(s) 581, 1299, 1695, 1919
Zsp2I ATGCAT 1 cut(s) 1452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.