Rroxscaffold_5G00375720

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011786
Physical Location & Seq
Forward (+)
56492887 .. 56495764
2878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00375720.1

Sequence Viewer

Length: 2115 bp
ATGGAGCCACCGGCGGCGGCGCCGCCACTCCAGACTCACTACGCCGACTCACTGGACTCGTCGCCGAGGTCCCGTAACACCGACTCCTGGGACGACCCGCTCCCGCCGGCGTCCAGGCTCCGGCTGATGTGCAGCTACGGCGGCCACATCGTTCCGCGGCCGCACGACAAGTCGTTGTGCTACGTCGGCGGCGACACTCGAATCGTCGTCGTGGACAGGAACACTTCGCTTGCGGACCTCTCGAATCGCCTGGCGAAGACGCTTCTGAATAACCGGCCGTTCACGCTGAAATACCAGTTGCCGAGCGAGGACCTGGACTCGTTGATCTCCGTGACGACCGACGAGGATTTGGATAATATGATCGACGAGTTTGACCGGACGGCGAGCCACAATTCGTCGGCGAAGCCGGCGCGGATTCGGCTGTTTCTGTTTCCGCTGAAGCCAGATTCGTCGCAGTCGATGGGGCCCCTCGATATGCCGACCAAGTCGGAGGACTGGTTCCTCAACGCGCTCAACGGCTCGTCGGCGATGCTCAACCGCGGCTTCTCTGACTCCGCCTCCGTCAACTGCTTGCTCGGCCTAGACGACGACGGCGGAAGCGGCGCGGCGAACAATTCGGATTCGAGAGGAGGAGACGCGGAGGCTTCTGCGGCGGCGAATTGCAAGAACGGTAAACCGGACGTTCACTCTGTCCCCGATTCGCCGATGCTCGAGAACTCGTCGTCGTTTGGGTCAACATCGTCGTCTCCGTCGCTGGCGAATTTGCCTCCGATTCGGGTCCACGTGGAAGACAGCGGTGGGAGCAGTCACGGTGGGAATAGAGCGCAGGATCAGAAGATTGGGATTGAAGAGCAGTTTGCTCAGATGACGGTGGGTTTGGTTGGGCAACAGCAGAAGCAAGACGATAGCGGCGGCTTTGTGGTGCTGTCTTCACCGCCGCCGTTGCCGACTACTATTGTGCCTTCCTCTGCGCCGGTGAGTTCTTCTTCGGCCCCTGATTACCTGAATCGGGTCGTCTCCGATGACGAACGATCCGATCACGGTGGATATCGGAAACCGCTTCCTCCTCAGCCTCAGCAACAGAGTCTACCGCCTCAGTCTCAGCCCAAATCAACCGGAATTTTTGATTTGCCGTCGCCGGATTCAGTGTCAAGTGAACATAGTTTATCAAATGCTGCCATATCTCGCCCAAAACCTGTAATTTATCAAGAACCAGTAGCTCAAATACCCGCTGTAACCCCCACAAGGTTTCCTGCAAACCTTGTTGATCCGAAAGTTAATGTCTCCGATCCAAACACTCGGGTTCAGTTGCAACAACAGGTTCAGGATTCTGGGTATGTATTGCAAGCCCAATATGATCAACAACTACAACAGCAGCAGCAACTACTTCAACAACAACAACAACTACAACAACAGCAACAATTTATACACCCTGGGGCACATTACATGCATCATCATCCTGCTGGGTCTGTGCCAATTCAGGCATACTACCCTGTATATCCTTCTCAGCAGCACCAGCACCAGCACCAGCACCAACAGCAACAGCAGCACCAGCAGCAGCAGCAACAGCAACACCACCATCATCCTCAGCTTGATCAGCAGCAGCAATACCAGGTTTATTACATGCCCACAAGACAGGCCCAACCTTACAGCAACTTGCCCCTGCAGCAACAGCTGCAGTCCAACATTAGTGAAGCTGCTGCTGCTACTATTACTTCTAGCCGGTCTCAACCGCCTCCCAATCCAATGCTCTCTCCTACCGCAGCTTACAGCCAGATAAGGAATGCCCCCATTGCCAAACCCGAAATTGCTGCTGGTGTGTACAGGACAACAACTACAGCTGCTCCTCCATCTCTGGTTCAAGTTCCTCCTACTCAGCATCAGCCTCAGCAACAATATGTTGGTTACGCACAGGTTCATCACCCGTCACAATCAACTGTTCCTACTTCGACAGGTGCTGCTAATTATGCCTATGAATATGCCGATGCTTCTCATGCTCAGCATGCCCAGGTATACTATACTCAGCCTCTAGCACCCGCAATGACTTCTCAGTACCAAACCATGACAGCCGCAGCTGCCATGGGGCTGCCGGGAAGTTTCAACTCAGCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

704

Amino Acids

76.64

Weight (kDa)

5.81

Isoelectric Point (pI)

69.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 55 - 145 2e-16 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011786)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01190
fragaria_vesca FvH4_4g26650 FvH4_4g26650 FvH4_4g26650
malus_domestica MD13G1034900.v1.1 MD16G1036800.v1.1
prunus_persica Prupe.1G317300_v2.0.a1
pyrus_communis pycom13g03050 pycom16g03170
rosa_chinensis RchiOBHm_Chr4g0434361
rosa_laevigata RLG00000006680
rosa_multiflora Rmu_sc0016328.1_g000003
rosa_roxburghii Rroxscaffold_5G00375720
rosa_rugosa Rorug04G0276300
rosa_samantha Rh4AG331400 Rh4BG339300 Rh4CG354400 Rh4DG334400
rosa_wichuraiana Rw4G028740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccBSI CCGCTC 1 cut(s) 100
AccI GTMKAC 2 cut(s) 1087, 2013
AccII CGCG 6 cut(s) 157, 412, 509, 540, 605, 638
AclWI GGATC 4 cut(s) 837, 1026, 1262, 1283
AcoI YGGCCR 3 cut(s) 142, 158, 275
AcsI RAATTY 2 cut(s) 760, 1119
AcuI CTGAAG 1 cut(s) 458
AcvI CACGTG 1 cut(s) 784
AcyI GRCGYC 2 cut(s) 20, 110
AfaI GTAC 2 cut(s) 1823, 2054
AfiI CCNNNNNNNGG 4 cut(s) 87, 120, 1009, 1245
AgsI TTSAA 4 cut(s) 848, 1391, 1862, 2101
AjnI CCWGG 7 cut(s) 86, 113, 249, 312, 1432, 1611, 2007
AloI GAACNNNNNNTCC 2 cut(s) 482, 514
AluBI AGCT 9 cut(s) 135, 1220, 1591, 1675, 1697, 1766, 1841, 2075, 2108
AluI AGCT 9 cut(s) 135, 1220, 1591, 1675, 1697, 1766, 1841, 2075, 2108
Alw26I GTCTC 6 cut(s) 627, 750, 1021, 1104, 1288, 1731
AlwI GGATC 4 cut(s) 837, 1026, 1262, 1283
AlwNI CAGNNNCTG 1 cut(s) 1958
Ama87I CYCGRG 2 cut(s) 710, 1299
AoxI GGCC 7 cut(s) 142, 158, 275, 464, 577, 990, 1638
ApaI GGGCCC 1 cut(s) 468
ApoI RAATTY 2 cut(s) 760, 1119
ArsI GACNNNNNNTTYG 2 cut(s) 859, 891
AspLEI GCGC 6 cut(s) 22, 412, 511, 605, 826, 973
AspS9I GGNCC 8 cut(s) 69, 235, 310, 464, 465, 778, 991, 1639
AsuC2I CCSGG 1 cut(s) 2091
AsuHPI GGTGA 3 cut(s) 924, 988, 1913
AvaI CYCGRG 2 cut(s) 710, 1299
AvaII GGWCC 4 cut(s) 69, 235, 310, 778
BaeGI GKGCMC 2 cut(s) 468, 1441
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 468
BbrPI CACGTG 1 cut(s) 784
BbsI GAAGAC 3 cut(s) 263, 795, 921
BbvCI CCTCAGC 4 cut(s) 1068, 1074, 1587, 1887
BccI CCATC 3 cut(s) 454, 1587, 1858
BceAI ACGGC 7 cut(s) 154, 262, 396, 532, 607, 925, 1117
BcgI CGANNNNNNTGC 2 cut(s) 1793, 1827
BciT130I CCWGG 7 cut(s) 88, 115, 251, 314, 1434, 1613, 2009
BclI TGATCA 2 cut(s) 1357, 1594
BcnI CCSGG 1 cut(s) 2091
BcoDI GTCTC 6 cut(s) 627, 750, 1021, 1104, 1288, 1731
BfaI CTAG 3 cut(s) 581, 1719, 2030
BfmI CTRYAG 3 cut(s) 1664, 1676, 1836
BfoI RGCGCY 1 cut(s) 23
BlpI GCTNAGC 1 cut(s) 1998
Bme1390I CCNGG 8 cut(s) 88, 115, 251, 314, 1434, 1613, 2009, 2091
Bme18I GGWCC 4 cut(s) 69, 235, 310, 778
BmeT110I CYCGRG 2 cut(s) 710, 1299
BmgT120I GGNCC 8 cut(s) 69, 235, 310, 464, 465, 778, 991, 1639
BmrFI CCNGG 8 cut(s) 88, 115, 251, 314, 1434, 1613, 2009, 2091
BmsI GCATC 5 cut(s) 519, 696, 1459, 1888, 1975
BpiI GAAGAC 3 cut(s) 263, 795, 921
BpmI CTGGAG 1 cut(s) 14
Bpu10I CCTNAGC 4 cut(s) 1068, 1074, 1587, 1887
Bpu1102I GCTNAGC 1 cut(s) 1998
BpuMI CCSGG 1 cut(s) 2091
BsaAI YACGTR 1 cut(s) 784
BsaHI GRCGYC 2 cut(s) 20, 110
BsaI GGTCTC 1 cut(s) 1731
BsaJI CCNNGG 8 cut(s) 65, 87, 155, 538, 1432, 1433, 2007, 2079
BsaWI WCCGGW 3 cut(s) 375, 676, 1115
BsaXI ACNNNNNCTCC 8 cut(s) 68, 98, 482, 512, 542, 572, 1828, 1858
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 120, 1009, 1245
Bse118I RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1722
Bse1I ACTGG 4 cut(s) 57, 295, 500, 1214
Bse3DI GCAATG 2 cut(s) 1791, 2046
BseBI CCWGG 7 cut(s) 88, 115, 251, 314, 1434, 1613, 2009
BseDI CCNNGG 8 cut(s) 65, 87, 155, 538, 1432, 1433, 2007, 2079
BseGI GGATG 2 cut(s) 1456, 1582
BseLI CCNNNNNNNGG 4 cut(s) 87, 120, 1009, 1245
BseMI GCAATG 2 cut(s) 1791, 2046
BseNI ACTGG 4 cut(s) 57, 295, 500, 1214
BseRI GAGGAG 4 cut(s) 642, 645, 1056, 1836
BseSI GKGCMC 2 cut(s) 468, 1441
BseX3I CGGCCG 2 cut(s) 158, 275
BseYI CCCAGC 1 cut(s) 1463
BsgI GTGCAG 1 cut(s) 151
Bsh1236I CGCG 6 cut(s) 157, 412, 509, 540, 605, 638
Bsh1285I CGRYCG 3 cut(s) 161, 278, 339
BshFI GGCC 7 cut(s) 144, 160, 277, 466, 579, 992, 1640
BshNI GGYRCC 1 cut(s) 19
BsiEI CGRYCG 3 cut(s) 161, 278, 339
BsiHKCI CYCGRG 2 cut(s) 710, 1299
BslFI GGGAC 3 cut(s) 55, 104, 677
BslI CCNNNNNNNGG 4 cut(s) 87, 120, 1009, 1245
BsmAI GTCTC 6 cut(s) 627, 750, 1021, 1104, 1288, 1731
BsmBI CGTCTC 3 cut(s) 627, 750, 1021
BsmFI GGGAC 3 cut(s) 55, 104, 677
BsmI GAATGC 1 cut(s) 1789
BsnI GGCC 7 cut(s) 144, 160, 277, 466, 579, 992, 1640
Bso31I GGTCTC 1 cut(s) 1731
BsoBI CYCGRG 2 cut(s) 710, 1299
Bsp120I GGGCCC 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 468, 1441
Bsp1407I TGTACA 1 cut(s) 1821
Bsp143I GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1267, 1288, 1357, 1594
Bsp1720I GCTNAGC 1 cut(s) 1998
Bsp19I CCATGG 1 cut(s) 2079
BspANI GGCC 7 cut(s) 144, 160, 277, 466, 579, 992, 1640
BspFNI CGCG 6 cut(s) 157, 412, 509, 540, 605, 638
BspMAI CTGCAG 2 cut(s) 1668, 1680
BspPI GGATC 4 cut(s) 837, 1026, 1262, 1283
BspQI GCTCTTC 1 cut(s) 843
BspT107I GGYRCC 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 1731
BsrBI CCGCTC 1 cut(s) 100
BsrDI GCAATG 2 cut(s) 1791, 2046
BsrFI RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1722
BsrGI TGTACA 1 cut(s) 1821
BsrI ACTGG 4 cut(s) 57, 295, 500, 1214
BssAI RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1722
BssECI CCNNGG 8 cut(s) 65, 87, 155, 538, 1432, 1433, 2007, 2079
BssMI GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1267, 1288, 1357, 1594
BssNAI GTATAC 1 cut(s) 2014
BssNI GRCGYC 2 cut(s) 20, 110
BssT1I CCWWGG 1 cut(s) 2079
Bst1107I GTATAC 1 cut(s) 2014
Bst2UI CCWGG 7 cut(s) 88, 115, 251, 314, 1434, 1613, 2009
Bst4CI ACNGT 5 cut(s) 671, 812, 871, 1043, 1939
Bst6I CTCTTC 1 cut(s) 843
BstACI GRCGYC 2 cut(s) 20, 110
BstAPI GCANNNNNTGC 1 cut(s) 1675
BstAUI TGTACA 1 cut(s) 1821
BstBAI YACGTR 1 cut(s) 784
BstC8I GCNNGC 8 cut(s) 108, 231, 385, 408, 572, 756, 1347, 2004
BstDSI CCRYGG 3 cut(s) 155, 538, 2079
BstF5I GGATG 2 cut(s) 1456, 1582
BstFNI CGCG 6 cut(s) 157, 412, 509, 540, 605, 638
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 6 cut(s) 22, 412, 511, 605, 826, 973
BstKTI GATC 9 cut(s) 327, 363, 832, 1034, 1039, 1270, 1291, 1360, 1597
BstMAI GTCTC 6 cut(s) 627, 750, 1021, 1104, 1288, 1731
BstMBI GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1267, 1288, 1357, 1594
BstMCI CGRYCG 3 cut(s) 161, 278, 339
BstNI CCWGG 7 cut(s) 88, 115, 251, 314, 1434, 1613, 2009
BstNSI RCATGY 3 cut(s) 1450, 1627, 2006
BstSCI CCNGG 8 cut(s) 86, 113, 249, 312, 1432, 1611, 2007, 2089
BstSFI CTRYAG 3 cut(s) 1664, 1676, 1836
BstSLI GKGCMC 2 cut(s) 468, 1441
BstUI CGCG 6 cut(s) 157, 412, 509, 540, 605, 638
BstV2I GAAGAC 3 cut(s) 263, 795, 921
BstZ17I GTATAC 1 cut(s) 2014
BstZI CGGCCG 2 cut(s) 158, 275
BsuRI GGCC 7 cut(s) 144, 160, 277, 466, 579, 992, 1640
BtgI CCRYGG 3 cut(s) 155, 538, 2079
BtgZI GCGATG 1 cut(s) 542
BtsCI GGATG 2 cut(s) 1456, 1582
BtsIMutI CAGTG 2 cut(s) 50, 1152
Cac8I GCNNGC 8 cut(s) 108, 231, 385, 408, 572, 756, 1347, 2004
CaiI CAGNNNCTG 1 cut(s) 1958
CciNI GCGGCCGC 1 cut(s) 158
CfoI GCGC 6 cut(s) 22, 412, 511, 605, 826, 973
Cfr10I RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1722
Cfr13I GGNCC 8 cut(s) 69, 235, 310, 464, 465, 778, 991, 1639
Cfr42I CCGCGG 2 cut(s) 158, 541
CseI GACGC 3 cut(s) 99, 268, 644
CsiI ACCWGGT 1 cut(s) 1611
Csp6I GTAC 2 cut(s) 1822, 2053
CviAII CATG 6 cut(s) 1447, 1624, 1994, 2003, 2062, 2080
CviQI GTAC 2 cut(s) 1822, 2053
DinI GGCGCC 1 cut(s) 21
DpnI GATC 9 cut(s) 326, 362, 831, 1033, 1038, 1269, 1290, 1359, 1596
DpnII GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1267, 1288, 1357, 1594
EaeI YGGCCR 3 cut(s) 142, 158, 275
EagI CGGCCG 2 cut(s) 158, 275
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
EciI GGCGGA 2 cut(s) 544, 609
EclXI CGGCCG 2 cut(s) 158, 275
Eco130I CCWWGG 1 cut(s) 2079
Eco24I GRGCYC 1 cut(s) 468
Eco31I GGTCTC 1 cut(s) 1731
Eco32I GATATC 1 cut(s) 1049
Eco47I GGWCC 4 cut(s) 69, 235, 310, 778
Eco52I CGGCCG 2 cut(s) 158, 275
Eco57I CTGAAG 1 cut(s) 458
Eco72I CACGTG 1 cut(s) 784
Eco88I CYCGRG 2 cut(s) 710, 1299
EcoO109I RGGNCCY 4 cut(s) 69, 310, 464, 465
EcoRII CCWGG 7 cut(s) 86, 113, 249, 312, 1432, 1611, 2007
EcoRV GATATC 1 cut(s) 1049
EcoT14I CCWWGG 1 cut(s) 2079
EcoT22I ATGCAT 1 cut(s) 1452
EcoT38I GRGCYC 1 cut(s) 468
EgeI GGCGCC 1 cut(s) 21
EheI GGCGCC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 2079
Esp3I CGTCTC 3 cut(s) 627, 750, 1021
FaeI CATG 6 cut(s) 1450, 1627, 1997, 2006, 2065, 2083
FaqI GGGAC 3 cut(s) 55, 104, 677
FatI CATG 6 cut(s) 1446, 1623, 1993, 2002, 2061, 2079
FauI CCCGC 4 cut(s) 105, 111, 1237, 2044
FbaI TGATCA 2 cut(s) 1357, 1594
FblI GTMKAC 2 cut(s) 1087, 2013
FokI GGATG 2 cut(s) 1443, 1569
FriOI GRGCYC 1 cut(s) 468
FspBI CTAG 3 cut(s) 581, 1719, 2030
GlaI GCGC 6 cut(s) 21, 411, 510, 604, 825, 972
GsaI CCCAGC 1 cut(s) 1467
GsuI CTGGAG 1 cut(s) 14
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 7 cut(s) 144, 160, 277, 466, 579, 992, 1640
HgaI GACGC 3 cut(s) 99, 268, 644
HhaI GCGC 6 cut(s) 22, 412, 511, 605, 826, 973
Hin1I GRCGYC 2 cut(s) 20, 110
Hin1II CATG 6 cut(s) 1450, 1627, 1997, 2006, 2065, 2083
Hin6I GCGC 6 cut(s) 20, 410, 509, 603, 824, 971
HinP1I GCGC 6 cut(s) 20, 410, 509, 603, 824, 971
HincII GTYRAC 2 cut(s) 565, 735
HindII GTYRAC 2 cut(s) 565, 735
HphI GGTGA 3 cut(s) 924, 988, 1913
Hpy188III TCNNGA 6 cut(s) 31, 241, 624, 712, 1208, 1325
HpyAV CCTTC 2 cut(s) 972, 1512
HpyCH4III ACNGT 5 cut(s) 671, 812, 871, 1043, 1939
HpyCH4IV ACGT 3 cut(s) 183, 681, 783
HpyCH4V TGCA 8 cut(s) 132, 663, 1256, 1312, 1345, 1450, 1666, 1678
HpySE526I ACGT 3 cut(s) 183, 681, 783
Hsp92I GRCGYC 2 cut(s) 20, 110
Hsp92II CATG 6 cut(s) 1450, 1627, 1997, 2006, 2065, 2083
HspAI GCGC 6 cut(s) 20, 410, 509, 603, 824, 971
KasI GGCGCC 1 cut(s) 19
KroI GCCGGC 2 cut(s) 106, 406
KroNI GCCGGC 2 cut(s) 108, 408
Ksp22I TGATCA 2 cut(s) 1357, 1594
KspI CCGCGG 2 cut(s) 158, 541
Kzo9I GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1267, 1288, 1357, 1594
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 5 cut(s) 4, 105, 123, 801, 1849
LweI GCATC 5 cut(s) 519, 696, 1459, 1888, 1975
MabI ACCWGGT 1 cut(s) 1611
MaeI CTAG 3 cut(s) 581, 1719, 2030
MaeII ACGT 3 cut(s) 183, 681, 783
MaeIII GTNAC 6 cut(s) 74, 331, 806, 1234, 1904, 1926
MalI GATC 9 cut(s) 326, 362, 831, 1033, 1038, 1269, 1290, 1359, 1596
MbiI CCGCTC 1 cut(s) 100
MboI GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1267, 1288, 1357, 1594
MboII GAAGA 7 cut(s) 268, 800, 847, 860, 921, 975, 978
MhlI GDGCHC 2 cut(s) 468, 1441
Mly113I GGCGCC 1 cut(s) 20
MlyI GAGTC 7 cut(s) 28, 41, 50, 77, 311, 545, 1093
MmeI TCCRAC 2 cut(s) 468, 1707
Mph1103I ATGCAT 1 cut(s) 1452
MreI CGCCGGCG 1 cut(s) 106
MroNI GCCGGC 2 cut(s) 106, 406
MseI TTAA 1 cut(s) 1278
MspA1I CMGCKG 8 cut(s) 157, 436, 540, 795, 1232, 1675, 1841, 2075
MspR9I CCNGG 8 cut(s) 88, 115, 251, 314, 1434, 1613, 2009, 2091
Mva1269I GAATGC 1 cut(s) 1789
MvaI CCWGG 7 cut(s) 88, 115, 251, 314, 1434, 1613, 2009
MvnI CGCG 6 cut(s) 157, 412, 509, 540, 605, 638
NaeI GCCGGC 2 cut(s) 108, 408
NarI GGCGCC 1 cut(s) 20
NciI CCSGG 1 cut(s) 2091
NcoI CCATGG 1 cut(s) 2079
NdeII GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1267, 1288, 1357, 1594
NgoMIV GCCGGC 2 cut(s) 106, 406
NlaIII CATG 6 cut(s) 1450, 1627, 1997, 2006, 2065, 2083
NmeAIII GCCGAG 3 cut(s) 90, 327, 555
NmuCI GTSAC 3 cut(s) 331, 806, 1926
NotI GCGGCCGC 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 1452
NspI RCATGY 3 cut(s) 1450, 1627, 2006
PaeI GCATGC 1 cut(s) 2006
PaeR7I CTCGAG 1 cut(s) 710
PasI CCCWGGG 1 cut(s) 1433
PciSI GCTCTTC 1 cut(s) 843
PcsI WCGNNNNNNNCGW 5 cut(s) 189, 455, 582, 746, 1032
PctI GAATGC 1 cut(s) 1789
PdiI GCCGGC 2 cut(s) 108, 408
PflFI GACNNNGTC 1 cut(s) 484
PleI GAGTC 7 cut(s) 28, 41, 50, 77, 311, 545, 1092
PluTI GGCGCC 1 cut(s) 23
PmaCI CACGTG 1 cut(s) 784
PmlI CACGTG 1 cut(s) 784
PpsI GAGTC 7 cut(s) 28, 41, 50, 77, 311, 545, 1092
Ppu21I YACGTR 1 cut(s) 784
PpuMI RGGWCCY 2 cut(s) 69, 310
Psp5II RGGWCCY 2 cut(s) 69, 310
Psp6I CCWGG 7 cut(s) 86, 113, 249, 312, 1432, 1611, 2007
PspCI CACGTG 1 cut(s) 784
PspFI CCCAGC 1 cut(s) 1463
PspGI CCWGG 7 cut(s) 86, 113, 249, 312, 1432, 1611, 2007
PspOMI GGGCCC 1 cut(s) 464
PspPI GGNCC 8 cut(s) 69, 235, 310, 464, 465, 778, 991, 1639
PspPPI RGGWCCY 2 cut(s) 69, 310
PstI CTGCAG 2 cut(s) 1668, 1680
PstNI CAGNNNCTG 1 cut(s) 1958
PsyI GACNNNGTC 1 cut(s) 484
PvuII CAGCTG 3 cut(s) 1675, 1841, 2075
RsaI GTAC 2 cut(s) 1823, 2054
RsaNI GTAC 2 cut(s) 1822, 2053
SacII CCGCGG 2 cut(s) 158, 541
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 1 cut(s) 1278
Sau3AI GATC 9 cut(s) 324, 360, 829, 1031, 1036, 1267, 1288, 1357, 1594
Sau96I GGNCC 8 cut(s) 69, 235, 310, 464, 465, 778, 991, 1639
SchI GAGTC 7 cut(s) 28, 41, 50, 77, 311, 545, 1093
ScrFI CCNGG 8 cut(s) 88, 115, 251, 314, 1434, 1613, 2009, 2091
SduI GDGCHC 2 cut(s) 468, 1441
SexAI ACCWGGT 1 cut(s) 1611
SfaNI GCATC 5 cut(s) 519, 696, 1459, 1888, 1975
SfcI CTRYAG 3 cut(s) 1664, 1676, 1836
SfoI GGCGCC 1 cut(s) 21
Sfr274I CTCGAG 1 cut(s) 710
Sfr303I CCGCGG 2 cut(s) 158, 541
SgrAI CRCCGGYG 3 cut(s) 10, 106, 973
SgrBI CCGCGG 2 cut(s) 158, 541
SinI GGWCC 4 cut(s) 69, 235, 310, 778
SlaI CTCGAG 1 cut(s) 710
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SphI GCATGC 1 cut(s) 2006
SspDI GGCGCC 1 cut(s) 19
SspMI CTAG 3 cut(s) 581, 1719, 2030
StyD4I CCNGG 8 cut(s) 86, 113, 249, 312, 1432, 1611, 2007, 2089
StyI CCWWGG 1 cut(s) 2079
TaaI ACNGT 5 cut(s) 671, 812, 871, 1043, 1939
TaiI ACGT 3 cut(s) 186, 684, 786
TaqI TCGA 8 cut(s) 199, 242, 363, 458, 471, 623, 711, 1949
TaqII GACCGA 1 cut(s) 353
TatI WGTACW 1 cut(s) 1821
Tru1I TTAA 1 cut(s) 1278
Tru9I TTAA 1 cut(s) 1278
TscAI CASTG 2 cut(s) 57, 1152
TseFI GTSAC 3 cut(s) 331, 806, 1926
Tsp45I GTSAC 3 cut(s) 331, 806, 1926
TspDTI ATGAA 2 cut(s) 1907, 1989
TspGWI ACGGA 3 cut(s) 319, 550, 738
TspRI CASTG 2 cut(s) 57, 1152
Tth111I GACNNNGTC 1 cut(s) 484
VpaK11BI GGWCC 4 cut(s) 69, 235, 310, 778
XapI RAATTY 2 cut(s) 760, 1119
XceI RCATGY 3 cut(s) 1450, 1627, 2006
XhoI CTCGAG 1 cut(s) 710
XmiI GTMKAC 2 cut(s) 1087, 2013
XspI CTAG 3 cut(s) 581, 1719, 2030
Zsp2I ATGCAT 1 cut(s) 1452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.