RchiOBHm_Chr4g0434361

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0011786
Physical Location & Seq
Forward (+)
58172569 .. 58175562
2994 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40281

Sequence Viewer

Length: 2133 bp
ATGGAGCCACCGGCGGCGTCGCCGCCACTCCAGACTCACTACGCCGACTCGCTGGACTCGTCGCCGAGGTCCCGTAACACCGACTCCTGGGACGACCCGCTCCCGCCGGCGTCCAGGCTCCGGCTGATGTGCAGCTACGGCGGCCACATCGTGCCGCGGCCGCACGACAAGTCGTTGTGCTACGTCGGCGGCGACACTCGAATCGTCGTCGTGGACAGGAACACTTCGCTTGCGGACCTCTCGAATCGTCTGGCGAAGACGCTTTTGAATAACCGGCCGTTCACGCTGAAATACCAGTTGCCGAGCGAGGACCTGGACTCGTTGATCTCCGTGACGACCGACGAGGATTTGGATAATATGATCGACGAGTTTGACCGGACGGCGAGCCACAATTCGTCGGCGAAGCCGGCGCGGATTCGGCTATTTCTGTTTCCGCTGAAGCCGGATTCGTCGCAGTCGATGGGGCCCCTCGATATGCCGACCAAGTCGGAGGACTGGTTCTTCAACGCGCTCAACGGCTCGTCGGAGATACTCAACCGCGGCTTCTCCGACTCCGCCTCCGTCAACTACTTGCTCGGCCTAGACGACGACGGCGGCGGCGGCGGGGCGAACAATTCGGATTCGAGAGGCGGAGACGCGGAGGCTTCTGCGGCGGCGAATTGCAAGAGCGGTAAACCGGACGTCCACTCTGTCCCCGATTCGCCGATGCTCGAGAACTCGTCGTCGTTTGGGTCAACATCGTCGTCTCCGTCGCTGGCGAATTTGCCTCCGATTCGGGTCCACGTGGAAGACAGCGGTGGGAGCAGTCACGGTGGCAATAGAGCGCAGGATCAGAAGGTTGGGATTGAAGAGCAGTTTGCTCAGATGACGGTGGGTTTGGTTGGGCAGCAGCAGAAGCAAGACGATAGCGGCGGCTTTGTGGTGCTGTCTTCACCGCCGCCGTTGCCGACTACTATTGTGCCTTCCTCTGCGCCGGTGAGTTCTTCTTCGGCCCCTGATTACCTGAATCGGGTCGTCTCCGATGACGAACGATCCGATCATGGTGGATATCGGAAACCGCTTCCTCCTCAGCCTCAGCAACAGAGTCTACCGCCTCAGTCTCAGCCCAAATCAACAGGAATTTTTGATTTGCCGTCGCCAGATTCAGTGTCAAGTGATCATAGTTTATCAAATGCTGCCATATCTCGCCCAAAACCTGTAATTTATCAAGAACCAGTTGCTCAAATACCCGCGGTAACCCCCACAAGGTTTCCTGCAAACCTTGTTGATCCAAAAGTTAATGTCTCCGATCCAAACACTCGGGTTCAGTTGCAACAACAGGTTCAGGATTCCGGGTATGTATTGCAAGCCCAATATGATCAGCAACTACAACAGCAGCAGCAACTACTACAACAACAACAACTACAACAACAGCAACAATATATACACCCTGGTGCACATTACATGCATCATCACCCTGCTGGGTCTGTGCCAATTCAGGCATACTACCCTGTATATCCTTCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACACCAGCAGCAACAGCAACACCACCATCATCCTCAGCTCGATCAGCAGCAGCAATACCAGGTTTATTACATGCCTGCAAGACAGGCCCAACCTTACAGCAACTTGCCCCTGCAGCAACCTTTGCAGTCCAACATTAGTGAAGCTGCTGCTGCTACTATTGCTTCTAGCCGGTCTCAACCGCCTCCCAATCCAATGCTCTCTCCTACCGCAGCTTACAGCCAGATAAGGAATGCCCCCATTGCCAAACCCGAAATTGCTGCTGGTGTGTACAGGACAACAACTACAGCTGCTCCTCCATCTCTGGTTCAAGTTCCCCCTACTCAGCATCAGCATCAGCCTCAGCAACAATATGTTGGTTACACACAGGTTCATCACCCGTCTCAATCAACTGTTCCTACTTCGACAGGTGCTGCTAATTATGCCTATGAATATGCCGATGCTTCTCATGCTCAGCATGCCCAGGTATACTATACTCAGCCTCTAGCACCCACAATGACTTCTCAGTACCAAACCATGACAGCCGCAGCTGCCATGGGACTGCCGGAAGTTTCAACTCAGCTTCCTAATGACAACATCAAGCAGCAGCAGCAGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

710

Amino Acids

77.49

Weight (kDa)

5.66

Isoelectric Point (pI)

72.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 55 - 145 2e-16 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011786)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01190
fragaria_vesca FvH4_4g26650 FvH4_4g26650 FvH4_4g26650
malus_domestica MD13G1034900.v1.1 MD16G1036800.v1.1
prunus_persica Prupe.1G317300_v2.0.a1
pyrus_communis pycom13g03050 pycom16g03170
rosa_chinensis RchiOBHm_Chr4g0434361
rosa_laevigata RLG00000006680
rosa_multiflora Rmu_sc0016328.1_g000003
rosa_roxburghii Rroxscaffold_5G00375720
rosa_rugosa Rorug04G0276300
rosa_samantha Rh4AG331400 Rh4BG339300 Rh4CG354400 Rh4DG334400
rosa_wichuraiana Rw4G028740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 684
AccBSI CCGCTC 2 cut(s) 100, 669
AccI GTMKAC 2 cut(s) 1087, 2001
AccII CGCG 6 cut(s) 157, 412, 509, 540, 638, 1232
AclWI GGATC 4 cut(s) 837, 1026, 1262, 1283
AcoI YGGCCR 3 cut(s) 142, 158, 275
AcsI RAATTY 2 cut(s) 760, 1119
AcuI CTGAAG 1 cut(s) 458
AcvI CACGTG 1 cut(s) 784
AcyI GRCGYC 3 cut(s) 17, 110, 681
AdeI CACNNNGTG 1 cut(s) 151
AfaI GTAC 2 cut(s) 1805, 2042
AfiI CCNNNNNNNGG 4 cut(s) 87, 120, 1009, 1245
AgsI TTSAA 5 cut(s) 268, 505, 848, 1844, 2088
AjnI CCWGG 6 cut(s) 86, 113, 312, 1429, 1593, 1995
AleI CACNNNNGTG 1 cut(s) 1431
AloI GAACNNNNNNTCC 2 cut(s) 482, 514
AluBI AGCT 7 cut(s) 135, 1573, 1679, 1748, 1823, 2063, 2095
AluI AGCT 7 cut(s) 135, 1573, 1679, 1748, 1823, 2063, 2095
Alw21I GWGCWC 1 cut(s) 1438
Alw26I GTCTC 7 cut(s) 627, 750, 1021, 1104, 1288, 1713, 1920
Alw44I GTGCAC 1 cut(s) 1434
AlwI GGATC 4 cut(s) 837, 1026, 1262, 1283
AlwNI CAGNNNCTG 1 cut(s) 1946
Ama87I CYCGRG 2 cut(s) 710, 1299
AoxI GGCC 7 cut(s) 142, 158, 275, 464, 577, 990, 1620
ApaI GGGCCC 1 cut(s) 468
ApaLI GTGCAC 1 cut(s) 1434
ApoI RAATTY 2 cut(s) 760, 1119
ArsI GACNNNNNNTTYG 2 cut(s) 859, 891
AspLEI GCGC 4 cut(s) 412, 511, 826, 973
AspS9I GGNCC 8 cut(s) 69, 235, 310, 464, 465, 778, 991, 1621
AsuC2I CCSGG 1 cut(s) 1333
AsuHPI GGTGA 4 cut(s) 924, 988, 1445, 1901
AvaI CYCGRG 2 cut(s) 710, 1299
AvaII GGWCC 4 cut(s) 69, 235, 310, 778
BaeGI GKGCMC 2 cut(s) 468, 1438
BanII GRGCYC 1 cut(s) 468
BbrPI CACGTG 1 cut(s) 784
BbsI GAAGAC 3 cut(s) 263, 795, 921
Bbv12I GWGCWC 1 cut(s) 1438
BbvCI CCTCAGC 4 cut(s) 1068, 1074, 1569, 1875
BccI CCATC 3 cut(s) 454, 1569, 1840
BceAI ACGGC 7 cut(s) 154, 262, 396, 532, 607, 925, 1117
BcgI CGANNNNNNTGC 2 cut(s) 1775, 1809
BciT130I CCWGG 6 cut(s) 88, 115, 314, 1431, 1595, 1997
BclI TGATCA 2 cut(s) 1156, 1357
BcnI CCSGG 1 cut(s) 1333
BcoDI GTCTC 7 cut(s) 627, 750, 1021, 1104, 1288, 1713, 1920
BfaI CTAG 3 cut(s) 581, 1701, 2018
BfmI CTRYAG 2 cut(s) 1646, 1818
BlpI GCTNAGC 1 cut(s) 1986
Bme1390I CCNGG 7 cut(s) 88, 115, 314, 1333, 1431, 1595, 1997
Bme18I GGWCC 4 cut(s) 69, 235, 310, 778
BmeT110I CYCGRG 2 cut(s) 710, 1299
BmgT120I GGNCC 8 cut(s) 69, 235, 310, 464, 465, 778, 991, 1621
BmiI GGNNCC 8 cut(s) 6, 71, 119, 465, 466, 467, 779, 993
BmrFI CCNGG 7 cut(s) 88, 115, 314, 1333, 1431, 1595, 1997
BmsI GCATC 5 cut(s) 696, 1456, 1870, 1876, 1963
BpiI GAAGAC 3 cut(s) 263, 795, 921
BpmI CTGGAG 1 cut(s) 14
Bpu10I CCTNAGC 4 cut(s) 1068, 1074, 1569, 1875
Bpu1102I GCTNAGC 1 cut(s) 1986
BpuMI CCSGG 1 cut(s) 1333
BsaAI YACGTR 1 cut(s) 784
BsaHI GRCGYC 3 cut(s) 17, 110, 681
BsaI GGTCTC 1 cut(s) 1713
BsaJI CCNNGG 8 cut(s) 65, 87, 155, 538, 1230, 1429, 1995, 2067
BsaWI WCCGGW 2 cut(s) 375, 676
BsaXI ACNNNNNCTCC 8 cut(s) 68, 98, 482, 512, 542, 572, 1810, 1840
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 120, 1009, 1245
Bse118I RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1704
Bse1I ACTGG 3 cut(s) 295, 500, 1214
Bse3DI GCAATG 1 cut(s) 1773
BseBI CCWGG 6 cut(s) 88, 115, 314, 1431, 1595, 1997
BseDI CCNNGG 8 cut(s) 65, 87, 155, 538, 1230, 1429, 1995, 2067
BseGI GGATG 1 cut(s) 1564
BseLI CCNNNNNNNGG 4 cut(s) 87, 120, 1009, 1245
BseMI GCAATG 1 cut(s) 1773
BseNI ACTGG 3 cut(s) 295, 500, 1214
BseRI GAGGAG 2 cut(s) 1056, 1818
BseSI GKGCMC 2 cut(s) 468, 1438
BseX3I CGGCCG 2 cut(s) 158, 275
BseYI CCCAGC 1 cut(s) 1460
BsgI GTGCAG 1 cut(s) 151
Bsh1236I CGCG 6 cut(s) 157, 412, 509, 540, 638, 1232
Bsh1285I CGRYCG 3 cut(s) 161, 278, 339
BshFI GGCC 7 cut(s) 144, 160, 277, 466, 579, 992, 1622
BsiEI CGRYCG 3 cut(s) 161, 278, 339
BsiHKAI GWGCWC 1 cut(s) 1438
BsiHKCI CYCGRG 2 cut(s) 710, 1299
BslFI GGGAC 4 cut(s) 55, 104, 677, 2085
BslI CCNNNNNNNGG 4 cut(s) 87, 120, 1009, 1245
BsmAI GTCTC 7 cut(s) 627, 750, 1021, 1104, 1288, 1713, 1920
BsmBI CGTCTC 4 cut(s) 627, 750, 1021, 1920
BsmFI GGGAC 4 cut(s) 55, 104, 677, 2085
BsmI GAATGC 1 cut(s) 1771
BsnI GGCC 7 cut(s) 144, 160, 277, 466, 579, 992, 1622
Bso31I GGTCTC 1 cut(s) 1713
BsoBI CYCGRG 2 cut(s) 710, 1299
Bsp120I GGGCCC 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 468, 1438
Bsp1407I TGTACA 1 cut(s) 1803
Bsp1720I GCTNAGC 1 cut(s) 1986
Bsp19I CCATGG 1 cut(s) 2067
BspANI GGCC 7 cut(s) 144, 160, 277, 466, 579, 992, 1622
BspFNI CGCG 6 cut(s) 157, 412, 509, 540, 638, 1232
BspLI GGNNCC 8 cut(s) 6, 71, 119, 465, 466, 467, 779, 993
BspMAI CTGCAG 1 cut(s) 1650
BspPI GGATC 4 cut(s) 837, 1026, 1262, 1283
BspQI GCTCTTC 1 cut(s) 843
BspTNI GGTCTC 1 cut(s) 1713
BsrBI CCGCTC 2 cut(s) 100, 669
BsrDI GCAATG 1 cut(s) 1773
BsrFI RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1704
BsrGI TGTACA 1 cut(s) 1803
BsrI ACTGG 3 cut(s) 295, 500, 1214
BssAI RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1704
BssECI CCNNGG 8 cut(s) 65, 87, 155, 538, 1230, 1429, 1995, 2067
BssNAI GTATAC 1 cut(s) 2002
BssNI GRCGYC 3 cut(s) 17, 110, 681
BssT1I CCWWGG 1 cut(s) 2067
Bst1107I GTATAC 1 cut(s) 2002
Bst2UI CCWGG 6 cut(s) 88, 115, 314, 1431, 1595, 1997
Bst4CI ACNGT 3 cut(s) 812, 871, 1927
Bst6I CTCTTC 1 cut(s) 843
BstACI GRCGYC 3 cut(s) 17, 110, 681
BstAPI GCANNNNNTGC 1 cut(s) 1657
BstAUI TGTACA 1 cut(s) 1803
BstBAI YACGTR 1 cut(s) 784
BstC8I GCNNGC 8 cut(s) 108, 231, 385, 408, 756, 1347, 1611, 1992
BstDSI CCRYGG 4 cut(s) 155, 538, 1230, 2067
BstEII GGTNACC 1 cut(s) 1234
BstF5I GGATG 1 cut(s) 1564
BstFNI CGCG 6 cut(s) 157, 412, 509, 540, 638, 1232
BstHHI GCGC 4 cut(s) 412, 511, 826, 973
BstMAI GTCTC 7 cut(s) 627, 750, 1021, 1104, 1288, 1713, 1920
BstMCI CGRYCG 3 cut(s) 161, 278, 339
BstNI CCWGG 6 cut(s) 88, 115, 314, 1431, 1595, 1997
BstNSI RCATGY 3 cut(s) 1447, 1609, 1994
BstPI GGTNACC 1 cut(s) 1234
BstSCI CCNGG 7 cut(s) 86, 113, 312, 1331, 1429, 1593, 1995
BstSFI CTRYAG 2 cut(s) 1646, 1818
BstSLI GKGCMC 2 cut(s) 468, 1438
BstUI CGCG 6 cut(s) 157, 412, 509, 540, 638, 1232
BstV2I GAAGAC 3 cut(s) 263, 795, 921
BstZ17I GTATAC 1 cut(s) 2002
BstZI CGGCCG 2 cut(s) 158, 275
BsuRI GGCC 7 cut(s) 144, 160, 277, 466, 579, 992, 1622
BtgI CCRYGG 4 cut(s) 155, 538, 1230, 2067
BtsCI GGATG 1 cut(s) 1564
BtsIMutI CAGTG 1 cut(s) 1152
Cac8I GCNNGC 8 cut(s) 108, 231, 385, 408, 756, 1347, 1611, 1992
CaiI CAGNNNCTG 1 cut(s) 1946
CciNI GCGGCCGC 1 cut(s) 158
CfoI GCGC 4 cut(s) 412, 511, 826, 973
Cfr10I RCCGGY 6 cut(s) 10, 106, 273, 406, 973, 1704
Cfr13I GGNCC 8 cut(s) 69, 235, 310, 464, 465, 778, 991, 1621
Cfr42I CCGCGG 3 cut(s) 158, 541, 1233
CseI GACGC 4 cut(s) 6, 99, 268, 644
CsiI ACCWGGT 1 cut(s) 1593
Csp6I GTAC 2 cut(s) 1804, 2041
CviAII CATG 7 cut(s) 1040, 1444, 1606, 1982, 1991, 2050, 2068
CviQI GTAC 2 cut(s) 1804, 2041
DraIII CACNNNGTG 1 cut(s) 151
EaeI YGGCCR 3 cut(s) 142, 158, 275
EagI CGGCCG 2 cut(s) 158, 275
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
EciI GGCGGA 2 cut(s) 544, 645
EclXI CGGCCG 2 cut(s) 158, 275
Eco130I CCWWGG 1 cut(s) 2067
Eco24I GRGCYC 1 cut(s) 468
Eco31I GGTCTC 1 cut(s) 1713
Eco32I GATATC 1 cut(s) 1049
Eco47I GGWCC 4 cut(s) 69, 235, 310, 778
Eco52I CGGCCG 2 cut(s) 158, 275
Eco57I CTGAAG 1 cut(s) 458
Eco72I CACGTG 1 cut(s) 784
Eco88I CYCGRG 2 cut(s) 710, 1299
Eco91I GGTNACC 1 cut(s) 1234
EcoO109I RGGNCCY 4 cut(s) 69, 310, 464, 465
EcoO65I GGTNACC 1 cut(s) 1234
EcoRII CCWGG 6 cut(s) 86, 113, 312, 1429, 1593, 1995
EcoRV GATATC 1 cut(s) 1049
EcoT14I CCWWGG 1 cut(s) 2067
EcoT22I ATGCAT 1 cut(s) 1449
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 2067
Esp3I CGTCTC 4 cut(s) 627, 750, 1021, 1920
FaeI CATG 7 cut(s) 1043, 1447, 1609, 1985, 1994, 2053, 2071
FaqI GGGAC 4 cut(s) 55, 104, 677, 2085
FatI CATG 7 cut(s) 1039, 1443, 1605, 1981, 1990, 2049, 2067
FauI CCCGC 4 cut(s) 105, 111, 596, 1237
FbaI TGATCA 2 cut(s) 1156, 1357
FblI GTMKAC 2 cut(s) 1087, 2001
FokI GGATG 1 cut(s) 1551
FriOI GRGCYC 1 cut(s) 468
FspBI CTAG 3 cut(s) 581, 1701, 2018
GlaI GCGC 4 cut(s) 411, 510, 825, 972
GsaI CCCAGC 1 cut(s) 1464
GsuI CTGGAG 1 cut(s) 14
HaeIII GGCC 7 cut(s) 144, 160, 277, 466, 579, 992, 1622
HgaI GACGC 4 cut(s) 6, 99, 268, 644
HhaI GCGC 4 cut(s) 412, 511, 826, 973
Hin1I GRCGYC 3 cut(s) 17, 110, 681
Hin1II CATG 7 cut(s) 1043, 1447, 1609, 1985, 1994, 2053, 2071
Hin6I GCGC 4 cut(s) 410, 509, 824, 971
HinP1I GCGC 4 cut(s) 410, 509, 824, 971
HincII GTYRAC 2 cut(s) 565, 735
HindII GTYRAC 2 cut(s) 565, 735
HphI GGTGA 4 cut(s) 924, 988, 1445, 1901
Hpy188III TCNNGA 6 cut(s) 31, 241, 624, 712, 1208, 1325
HpyAV CCTTC 3 cut(s) 829, 972, 1509
HpyCH4III ACNGT 3 cut(s) 812, 871, 1927
HpyCH4IV ACGT 3 cut(s) 183, 681, 783
HpySE526I ACGT 3 cut(s) 183, 681, 783
Hsp92I GRCGYC 3 cut(s) 17, 110, 681
Hsp92II CATG 7 cut(s) 1043, 1447, 1609, 1985, 1994, 2053, 2071
HspAI GCGC 4 cut(s) 410, 509, 824, 971
KroI GCCGGC 2 cut(s) 106, 406
KroNI GCCGGC 2 cut(s) 108, 408
Ksp22I TGATCA 2 cut(s) 1156, 1357
KspI CCGCGG 3 cut(s) 158, 541, 1233
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 5 cut(s) 4, 105, 123, 801, 1831
LweI GCATC 5 cut(s) 696, 1456, 1870, 1876, 1963
MabI ACCWGGT 1 cut(s) 1593
MaeI CTAG 3 cut(s) 581, 1701, 2018
MaeII ACGT 3 cut(s) 183, 681, 783
MaeIII GTNAC 5 cut(s) 74, 331, 806, 1234, 1892
MbiI CCGCTC 2 cut(s) 100, 669
MboII GAAGA 7 cut(s) 268, 493, 800, 860, 921, 975, 978
MhlI GDGCHC 2 cut(s) 468, 1438
MluCI AATT 9 cut(s) 391, 613, 658, 760, 1119, 1200, 1473, 1788, 1951
MlyI GAGTC 7 cut(s) 28, 41, 50, 77, 311, 545, 1093
MmeI TCCRAC 4 cut(s) 468, 504, 573, 1689
Mph1103I ATGCAT 1 cut(s) 1449
MreI CGCCGGCG 1 cut(s) 106
MroNI GCCGGC 2 cut(s) 106, 406
MseI TTAA 1 cut(s) 1278
MslI CAYNNNNRTG 1 cut(s) 1431
MspA1I CMGCKG 7 cut(s) 157, 436, 540, 795, 1232, 1823, 2063
MspR9I CCNGG 7 cut(s) 88, 115, 314, 1333, 1431, 1595, 1997
Mva1269I GAATGC 1 cut(s) 1771
MvaI CCWGG 6 cut(s) 88, 115, 314, 1431, 1595, 1997
MvnI CGCG 6 cut(s) 157, 412, 509, 540, 638, 1232
NaeI GCCGGC 2 cut(s) 108, 408
NciI CCSGG 1 cut(s) 1333
NcoI CCATGG 1 cut(s) 2067
NgoMIV GCCGGC 2 cut(s) 106, 406
NlaIII CATG 7 cut(s) 1043, 1447, 1609, 1985, 1994, 2053, 2071
NlaIV GGNNCC 8 cut(s) 6, 71, 119, 465, 466, 467, 779, 993
NmeAIII GCCGAG 3 cut(s) 90, 327, 555
NmuCI GTSAC 2 cut(s) 331, 806
NotI GCGGCCGC 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 1449
NspI RCATGY 3 cut(s) 1447, 1609, 1994
OliI CACNNNNGTG 1 cut(s) 1431
PaeI GCATGC 1 cut(s) 1994
PaeR7I CTCGAG 1 cut(s) 710
PciSI GCTCTTC 1 cut(s) 843
PcsI WCGNNNNNNNCGW 6 cut(s) 56, 189, 455, 582, 746, 1032
PctI GAATGC 1 cut(s) 1771
PdiI GCCGGC 2 cut(s) 108, 408
PflFI GACNNNGTC 1 cut(s) 484
PleI GAGTC 7 cut(s) 28, 41, 50, 77, 311, 545, 1092
PmaCI CACGTG 1 cut(s) 784
PmlI CACGTG 1 cut(s) 784
PpsI GAGTC 7 cut(s) 28, 41, 50, 77, 311, 545, 1092
Ppu21I YACGTR 1 cut(s) 784
PpuMI RGGWCCY 2 cut(s) 69, 310
Psp5II RGGWCCY 2 cut(s) 69, 310
Psp6I CCWGG 6 cut(s) 86, 113, 312, 1429, 1593, 1995
PspCI CACGTG 1 cut(s) 784
PspEI GGTNACC 1 cut(s) 1234
PspFI CCCAGC 1 cut(s) 1460
PspGI CCWGG 6 cut(s) 86, 113, 312, 1429, 1593, 1995
PspN4I GGNNCC 8 cut(s) 6, 71, 119, 465, 466, 467, 779, 993
PspOMI GGGCCC 1 cut(s) 464
PspPI GGNCC 8 cut(s) 69, 235, 310, 464, 465, 778, 991, 1621
PspPPI RGGWCCY 2 cut(s) 69, 310
PstI CTGCAG 1 cut(s) 1650
PstNI CAGNNNCTG 1 cut(s) 1946
PsyI GACNNNGTC 1 cut(s) 484
PvuII CAGCTG 2 cut(s) 1823, 2063
RsaI GTAC 2 cut(s) 1805, 2042
RsaNI GTAC 2 cut(s) 1804, 2041
RseI CAYNNNNRTG 1 cut(s) 1431
SacII CCGCGG 3 cut(s) 158, 541, 1233
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 1 cut(s) 1278
Sau96I GGNCC 8 cut(s) 69, 235, 310, 464, 465, 778, 991, 1621
SchI GAGTC 7 cut(s) 28, 41, 50, 77, 311, 545, 1093
ScrFI CCNGG 7 cut(s) 88, 115, 314, 1333, 1431, 1595, 1997
SduI GDGCHC 2 cut(s) 468, 1438
SexAI ACCWGGT 1 cut(s) 1593
SfaNI GCATC 5 cut(s) 696, 1456, 1870, 1876, 1963
SfcI CTRYAG 2 cut(s) 1646, 1818
Sfr274I CTCGAG 1 cut(s) 710
Sfr303I CCGCGG 3 cut(s) 158, 541, 1233
SgrAI CRCCGGYG 3 cut(s) 10, 106, 973
SgrBI CCGCGG 3 cut(s) 158, 541, 1233
SinI GGWCC 4 cut(s) 69, 235, 310, 778
SlaI CTCGAG 1 cut(s) 710
SmiMI CAYNNNNRTG 1 cut(s) 1431
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SphI GCATGC 1 cut(s) 1994
Sse9I AATT 9 cut(s) 391, 613, 658, 760, 1119, 1200, 1473, 1788, 1951
SspMI CTAG 3 cut(s) 581, 1701, 2018
StyD4I CCNGG 7 cut(s) 86, 113, 312, 1331, 1429, 1593, 1995
StyI CCWWGG 1 cut(s) 2067
TaaI ACNGT 3 cut(s) 812, 871, 1927
TaiI ACGT 3 cut(s) 186, 684, 786
TaqI TCGA 9 cut(s) 199, 242, 363, 458, 471, 623, 711, 1575, 1937
TaqII GACCGA 1 cut(s) 353
TasI AATT 9 cut(s) 391, 613, 658, 760, 1119, 1200, 1473, 1788, 1951
TatI WGTACW 1 cut(s) 1803
Tru1I TTAA 1 cut(s) 1278
Tru9I TTAA 1 cut(s) 1278
TscAI CASTG 1 cut(s) 1152
TseFI GTSAC 2 cut(s) 331, 806
Tsp45I GTSAC 2 cut(s) 331, 806
TspDTI ATGAA 2 cut(s) 1895, 1977
TspGWI ACGGA 3 cut(s) 319, 550, 738
TspRI CASTG 1 cut(s) 1152
Tth111I GACNNNGTC 1 cut(s) 484
VneI GTGCAC 1 cut(s) 1434
VpaK11BI GGWCC 4 cut(s) 69, 235, 310, 778
XapI RAATTY 2 cut(s) 760, 1119
XceI RCATGY 3 cut(s) 1447, 1609, 1994
XhoI CTCGAG 1 cut(s) 710
XmiI GTMKAC 2 cut(s) 1087, 2001
XspI CTAG 3 cut(s) 581, 1701, 2018
ZraI GACGTC 1 cut(s) 682
Zsp2I ATGCAT 1 cut(s) 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.