Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010420

Physical Location & Seq

Genomic Coordinates Forward (+)

38656870 .. 38660186

Gene Structure 3317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G463000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGCAATAGCATCAACATCAGCCTCAGCCTCAAAGCTCTTCTCTTTTTCCTCGTTATCATTCCGTCTGCGAAGCCTCACAACCGCCTCTAGTATCAGCAGCAACTGCAGCACCACAAGCAAGAAGAAGAAGGAGAAGGAGAACCTGAAGCAGAGAGTGGTGATAAAAGAAAAGAGGAGAACGCGTTCTGATAGAGAGTTCAAATTGGAAACCATTAAACGTTATGGAGATACTGCCGCCCACATTCCAGTCATGCTTGGTGAAGTTTTGGATGTATTCTCGGCATCCAAACAGCTCCGGTACTTCGTCGACTGTACGGTTGGAGCTGCTGGGCATTCCTCTGCGATAATTGAAGGCCATCCAGAAATGGAAGTGTATGTAGGACTTGATGTTGATCCTGTGGCGCTTGAGAAGGCTCGAGCACGGATCAACTCTGTTTTGCATAACCCAACTTCTTCGACCCTCAAAGCTTCCACCTTTCTGGAGAATTTCAGATATGTTAAGTCTCTGCTTTGCGATGTGGATGAGACACTCCTTGACACTGGGATTGATGGGATTTTAATGGACTTGGGAATGTCATCAATGCAAGTGAACGATCCTGAAAGAGGGTTCAGTGTGCTTGCTAATGGACCTCTTGATATGCGAATGGATCCTCAGGCAAGTCTGAAAGCTGAAGACATTTTAAACTCTTGGCCAGAGACTGAGGTAGGGCGCATCCTGCGAGAGTATGGGGAAGAAAGTAACTGGTACTCTCTTCAAAATAGAATTGTTAAAGCCCGATTGAATGGTGGATTGCATTCCACTGGTGATCTAGTTGATCTTATAAAAAGTGCGACTCCTCTGAGTCGAGAAGGAAGGCAAGGTTGGATTAAGACAGCTACAAGGGTCTTTCAAGCTCTGAGGATAGCTGTCAACGATGAACTGAAGACTCTGGAGGATTCTCTTTATGCTTGTTTTGACTGCCTTGCACCTGGTGGTAGGCTAGCGGTCATCTCTTTCCATAGTTTGGAAGACAGAATTGTGAAACAAACATTTCTGGACATAATCAATGTCAAAGATGGAGATGGGGATATTGATATGAATGAAGAAGAAGCGCGGAACAAAGATTTGAGAAAGGTCAGGAATGACATTGATGAAAGTGAAGCATGGATCAAACAAATGGTACAAGGCTTGAGAGGAACAATTCTCACTAAGAGACCAATTACACCATCTGAAAAGGAAGAGAGCCTGAATAGCCGTTCCAGAAGTGCTAAGCTGAGGGTGATTCAGAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_5

Protein Analysis

426

Amino Acids

47.4

Weight (kDa)

7.62

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10910
fragaria_vesca	FvH4_2g30630
malus_domestica	MD08G1133300.v1.1 MD15G1110800.v1.1
prunus_persica	Prupe.1G463000_v2.0.a1 Prupe.1G463000_v2.0.a1
pyrus_communis	pycom08g11220 pycom08g15000 pycom15g10120
rosa_chinensis	RchiOBHm_Chr6g0312281
rosa_laevigata	RLG00000010334 RLG00000010336
rosa_multiflora	Rmu_sc0020391.1_g000002 Rmu_ssc0000424.1_g000005 Rmu_ssc0000424.1_g000017
rosa_roxburghii	Rroxscaffold_7G00156870
rosa_rugosa	Rorug06G0394800
rosa_samantha	Rh6AG511700 Rh6CG528600 Rh6DG514500
rosa_wichuraiana	Rw6G044520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	824
AccB7I	CCANNNNNTGG	1 cut(s)	1006
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	2 cut(s)	184, 1096
AciI	CCGC	4 cut(s)	84, 237, 986, 1096
AclI	AACGTT	1 cut(s)	220
AclWI	GGATC	6 cut(s)	389, 434, 590, 644, 657, 1157
AcoI	YGGCCR	1 cut(s)	692
AcsI	RAATTY	1 cut(s)	487
AcuI	CTGAAG	3 cut(s)	167, 693, 944
AdeI	CACNNNGTG	1 cut(s)	974
AfaI	GTAC	4 cut(s)	302, 316, 749, 1164
AfiI	CCNNNNNNNGG	2 cut(s)	605, 1006
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	5 cut(s)	202, 353, 758, 784, 893
AjnI	CCWGG	1 cut(s)	970
AjuI	GAANNNNNNNTTGG	2 cut(s)	847, 879
AloI	GAACNNNNNNTCC	2 cut(s)	169, 201
AluBI	AGCT	9 cut(s)	37, 295, 326, 470, 671, 878, 896, 908, 1255
AluI	AGCT	9 cut(s)	37, 295, 326, 470, 671, 878, 896, 908, 1255
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	4 cut(s)	510, 521, 692, 1189
AlwI	GGATC	6 cut(s)	389, 434, 590, 644, 657, 1157
AlwNI	CAGNNNCTG	2 cut(s)	105, 701
Ama87I	CYCGRG	1 cut(s)	417
AoxI	GGCC	2 cut(s)	355, 692
ApeKI	GCWGC	3 cut(s)	99, 108, 326
ApoI	RAATTY	1 cut(s)	487
Asp700I	GAANNNNTTC	1 cut(s)	184
AspLEI	GCGC	3 cut(s)	406, 714, 1096
AspS9I	GGNCC	1 cut(s)	629
AsuHPI	GGTGA	4 cut(s)	172, 272, 818, 1273
AsuNHI	GCTAGC	1 cut(s)	982
AvaI	CYCGRG	1 cut(s)	417
AvaII	GGWCC	1 cut(s)	629
AxyI	CCTNAGG	1 cut(s)	654
BalI	TGGCCA	1 cut(s)	694
BamHI	GGATCC	1 cut(s)	649
BbsI	GAAGAC	3 cut(s)	681, 932, 1017
Bbv12I	GWGCWC	1 cut(s)	424
BbvCI	CCTCAGC	2 cut(s)	25, 1256
BbvI	GCAGC	3 cut(s)	111, 120, 313
BccI	CCATC	5 cut(s)	366, 545, 1052, 1058, 1216
BceAI	ACGGC	1 cut(s)	1221
BciT130I	CCWGG	1 cut(s)	972
BcoDI	GTCTC	4 cut(s)	510, 521, 692, 1189
BfaI	CTAG	3 cut(s)	90, 812, 983
BfmI	CTRYAG	1 cut(s)	106
BfoI	RGCGCY	1 cut(s)	407
BisI	GCNGC	4 cut(s)	100, 109, 237, 327
BlpI	GCTNAGC	1 cut(s)	1251
BlsI	GCNGC	4 cut(s)	101, 110, 238, 328
Bme1390I	CCNGG	1 cut(s)	972
Bme18I	GGWCC	1 cut(s)	629
BmeT110I	CYCGRG	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	629
BmiI	GGNNCC	1 cut(s)	651
BmrFI	CCNGG	1 cut(s)	972
BmrI	ACTGGG	1 cut(s)	552
BmsI	GCATC	3 cut(s)	20, 293, 723
BmtI	GCTAGC	1 cut(s)	986
BmuI	ACTGGG	1 cut(s)	552
BpiI	GAAGAC	3 cut(s)	681, 932, 1017
BpmI	CTGGAG	2 cut(s)	503, 953
Bpu10I	CCTNAGC	2 cut(s)	25, 1256
Bpu1102I	GCTNAGC	1 cut(s)	1251
BpuEI	CTTGAG	2 cut(s)	428, 1192
BsaBI	GATNNNNATC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	1189
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	2 cut(s)	605, 1006
Bse1I	ACTGG	4 cut(s)	248, 547, 749, 808
Bse21I	CCTNAGG	1 cut(s)	654
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	972
BseGI	GGATG	5 cut(s)	277, 284, 358, 529, 714
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	2 cut(s)	605, 1006
BseMII	CTCAG	6 cut(s)	39, 668, 693, 833, 890, 1247
BseNI	ACTGG	4 cut(s)	248, 547, 749, 808
BseRI	GAGGAG	2 cut(s)	190, 828
BseXI	GCAGC	3 cut(s)	111, 120, 313
BseYI	CCCAGC	1 cut(s)	329
Bsh1236I	CGCG	2 cut(s)	184, 1096
BshFI	GGCC	2 cut(s)	357, 694
BsiHKAI	GWGCWC	1 cut(s)	424
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	605, 1006
BsmAI	GTCTC	4 cut(s)	510, 521, 692, 1189
BsmI	GAATGC	2 cut(s)	334, 796
BsnI	GGCC	2 cut(s)	357, 694
Bso31I	GGTCTC	1 cut(s)	1189
BsoBI	CYCGRG	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	7 cut(s)	394, 426, 595, 649, 808, 817, 1149
Bsp1720I	GCTNAGC	1 cut(s)	1251
BspACI	CCGC	4 cut(s)	84, 237, 986, 1096
BspANI	GGCC	2 cut(s)	357, 694
BspCNI	CTCAG	6 cut(s)	38, 667, 694, 834, 891, 1248
BspFNI	CGCG	2 cut(s)	184, 1096
BspLI	GGNNCC	1 cut(s)	651
BspMAI	CTGCAG	1 cut(s)	110
BspOI	GCTAGC	1 cut(s)	986
BspPI	GGATC	6 cut(s)	389, 434, 590, 644, 657, 1157
BspQI	GCTCTTC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	1189
BsrI	ACTGG	4 cut(s)	248, 547, 749, 808
BssMI	GATC	7 cut(s)	394, 426, 595, 649, 808, 817, 1149
Bst2UI	CCWGG	1 cut(s)	972
Bst4CI	ACNGT	2 cut(s)	314, 319
Bst6I	CTCTTC	3 cut(s)	44, 759, 1215
BstAPI	GCANNNNNTGC	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	621, 984
BstDEI	CTNAG	9 cut(s)	25, 654, 702, 842, 899, 1191, 1251, 1256, 1275
BstENI	CCTNNNNNAGG	1 cut(s)	603
BstF5I	GGATG	5 cut(s)	277, 284, 358, 529, 714
BstFNI	CGCG	2 cut(s)	184, 1096
BstH2I	RGCGCY	1 cut(s)	407
BstHHI	GCGC	3 cut(s)	406, 714, 1096
BstKTI	GATC	7 cut(s)	397, 429, 598, 652, 811, 820, 1152
BstMAI	GTCTC	4 cut(s)	510, 521, 692, 1189
BstMBI	GATC	7 cut(s)	394, 426, 595, 649, 808, 817, 1149
BstMWI	GCNNNNNNNGC	5 cut(s)	105, 108, 117, 718, 1233
BstNI	CCWGG	1 cut(s)	972
BstSCI	CCNGG	1 cut(s)	970
BstSFI	CTRYAG	1 cut(s)	106
BstUI	CGCG	2 cut(s)	184, 1096
BstV1I	GCAGC	3 cut(s)	111, 120, 313
BstV2I	GAAGAC	3 cut(s)	681, 932, 1017
BstX2I	RGATCY	1 cut(s)	649
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	649
Bsu36I	CCTNAGG	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	357, 694
BtgZI	GCGATG	1 cut(s)	531
BtsCI	GGATG	5 cut(s)	277, 284, 358, 529, 714
BtsIMutI	CAGTG	3 cut(s)	540, 619, 801
Cac8I	GCNNGC	2 cut(s)	621, 984
CaiI	CAGNNNCTG	2 cut(s)	105, 701
CfoI	GCGC	3 cut(s)	406, 714, 1096
Cfr13I	GGNCC	1 cut(s)	629
CsiI	ACCWGGT	1 cut(s)	970
Csp6I	GTAC	4 cut(s)	301, 315, 748, 1163
CviAII	CATG	2 cut(s)	253, 1146
CviQI	GTAC	4 cut(s)	301, 315, 748, 1163
DdeI	CTNAG	9 cut(s)	25, 654, 702, 842, 899, 1191, 1251, 1256, 1275
DpnI	GATC	7 cut(s)	396, 428, 597, 651, 810, 819, 1151
DpnII	GATC	7 cut(s)	394, 426, 595, 649, 808, 817, 1149
DraI	TTTAAA	1 cut(s)	684
DraIII	CACNNNGTG	1 cut(s)	974
EaeI	YGGCCR	1 cut(s)	692
Eam1104I	CTCTTC	3 cut(s)	44, 759, 1215
EarI	CTCTTC	3 cut(s)	44, 759, 1215
Eco31I	GGTCTC	1 cut(s)	1189
Eco47I	GGWCC	1 cut(s)	629
Eco57I	CTGAAG	3 cut(s)	167, 693, 944
Eco81I	CCTNAGG	1 cut(s)	654
Eco88I	CYCGRG	1 cut(s)	417
EcoNI	CCTNNNNNAGG	1 cut(s)	603
EcoRII	CCWGG	1 cut(s)	970
FaeI	CATG	2 cut(s)	256, 1149
FatI	CATG	2 cut(s)	252, 1145
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	100, 109, 237, 327
FokI	GGATG	5 cut(s)	271, 284, 345, 536, 701
Fsp4HI	GCNGC	4 cut(s)	100, 109, 237, 327
FspBI	CTAG	3 cut(s)	90, 812, 983
GlaI	GCGC	3 cut(s)	405, 713, 1095
GluI	GCNGC	4 cut(s)	100, 109, 237, 327
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	2 cut(s)	503, 953
HaeII	RGCGCY	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	357, 694
HapII	CCGG	1 cut(s)	298
HhaI	GCGC	3 cut(s)	406, 714, 1096
Hin1II	CATG	2 cut(s)	256, 1149
Hin6I	GCGC	3 cut(s)	404, 712, 1094
HinP1I	GCGC	3 cut(s)	404, 712, 1094
HincII	GTYRAC	2 cut(s)	310, 913
HindII	GTYRAC	2 cut(s)	310, 913
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	5 cut(s)	835, 844, 928, 938, 1264
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	4 cut(s)	172, 272, 818, 1273
Hpy166II	GTNNAC	3 cut(s)	310, 592, 913
Hpy188I	TCNGA	7 cut(s)	190, 494, 666, 843, 900, 1213, 1269
Hpy188III	TCNNGA	9 cut(s)	362, 482, 599, 635, 848, 932, 1037, 1120, 1242
Hpy8I	GTNNAC	3 cut(s)	310, 592, 913
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	7 cut(s)	124, 130, 347, 406, 845, 849, 1264
HpyCH4III	ACNGT	2 cut(s)	314, 319
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	5 cut(s)	108, 442, 586, 796, 968
HpyF10VI	GCNNNNNNNGC	5 cut(s)	105, 108, 117, 718, 1233
HpyF3I	CTNAG	9 cut(s)	25, 654, 702, 842, 899, 1191, 1251, 1256, 1275
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	2 cut(s)	256, 1149
HspAI	GCGC	3 cut(s)	404, 712, 1094
Kzo9I	GATC	7 cut(s)	394, 426, 595, 649, 808, 817, 1149
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	2 cut(s)	300, 323
Lsp1109I	GCAGC	3 cut(s)	111, 120, 313
LweI	GCATC	3 cut(s)	20, 293, 723
MabI	ACCWGGT	1 cut(s)	970
MaeI	CTAG	3 cut(s)	90, 812, 983
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	740
MalI	GATC	7 cut(s)	396, 428, 597, 651, 810, 819, 1151
MboI	GATC	7 cut(s)	394, 426, 595, 649, 808, 817, 1149
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	1 cut(s)	424
MlsI	TGGCCA	1 cut(s)	694
MluCI	AATT	7 cut(s)	203, 348, 487, 765, 1017, 1182, 1200
MluI	ACGCGT	1 cut(s)	182
MluNI	TGGCCA	1 cut(s)	694
MlyI	GAGTC	3 cut(s)	829, 853, 922
MmeI	TCCRAC	2 cut(s)	301, 845
Mox20I	TGGCCA	1 cut(s)	694
MroXI	GAANNNNTTC	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	694
MseI	TTAA	6 cut(s)	216, 501, 560, 683, 771, 870
Msp20I	TGGCCA	1 cut(s)	694
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	1 cut(s)	972
Mva1269I	GAATGC	2 cut(s)	334, 796
MvaI	CCWGG	1 cut(s)	972
MvnI	CGCG	2 cut(s)	184, 1096
MwoI	GCNNNNNNNGC	5 cut(s)	105, 108, 117, 718, 1233
NdeII	GATC	7 cut(s)	394, 426, 595, 649, 808, 817, 1149
NheI	GCTAGC	1 cut(s)	982
NlaIII	CATG	2 cut(s)	256, 1149
NlaIV	GGNNCC	1 cut(s)	651
NmeAIII	GCCGAG	1 cut(s)	260
PaeR7I	CTCGAG	1 cut(s)	417
PciSI	GCTCTTC	1 cut(s)	44
PctI	GAATGC	2 cut(s)	334, 796
PdmI	GAANNNNTTC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	938, 1264
PflMI	CCANNNNNTGG	1 cut(s)	1006
PkrI	GCNGC	4 cut(s)	101, 110, 238, 328
PleI	GAGTC	3 cut(s)	829, 852, 922
PpsI	GAGTC	3 cut(s)	829, 852, 922
PsiI	TTATAA	1 cut(s)	824
Psp1406I	AACGTT	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	970
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	970
PspN4I	GGNNCC	1 cut(s)	651
PspPI	GGNCC	1 cut(s)	629
PspXI	VCTCGAGB	1 cut(s)	417
PstI	CTGCAG	1 cut(s)	110
PstNI	CAGNNNCTG	2 cut(s)	105, 701
PsuI	RGATCY	1 cut(s)	649
RsaI	GTAC	4 cut(s)	302, 316, 749, 1164
RsaNI	GTAC	4 cut(s)	301, 315, 748, 1163
SalI	GTCGAC	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	6 cut(s)	216, 501, 560, 683, 771, 870
SatI	GCNGC	4 cut(s)	100, 109, 237, 327
Sau3AI	GATC	7 cut(s)	394, 426, 595, 649, 808, 817, 1149
Sau96I	GGNCC	1 cut(s)	629
SchI	GAGTC	3 cut(s)	829, 853, 922
ScrFI	CCNGG	1 cut(s)	972
SduI	GDGCHC	1 cut(s)	424
SexAI	ACCWGGT	1 cut(s)	970
SfaNI	GCATC	3 cut(s)	20, 293, 723
SfcI	CTRYAG	1 cut(s)	106
Sfr274I	CTCGAG	1 cut(s)	417
SinI	GGWCC	1 cut(s)	629
SlaI	CTCGAG	1 cut(s)	417
SmlI	CTYRAG	3 cut(s)	407, 417, 1171
SmoI	CTYRAG	3 cut(s)	407, 417, 1171
Sse9I	AATT	7 cut(s)	203, 348, 487, 765, 1017, 1182, 1200
SsiI	CCGC	4 cut(s)	84, 237, 986, 1096
SspMI	CTAG	3 cut(s)	90, 812, 983
StyD4I	CCNGG	1 cut(s)	970
TaaI	ACNGT	2 cut(s)	314, 319
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	4 cut(s)	309, 418, 458, 847
TasI	AATT	7 cut(s)	203, 348, 487, 765, 1017, 1182, 1200
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	938, 1264
Tru1I	TTAA	6 cut(s)	216, 501, 560, 683, 771, 870
Tru9I	TTAA	6 cut(s)	216, 501, 560, 683, 771, 870
TscAI	CASTG	3 cut(s)	547, 619, 808
TseI	GCWGC	3 cut(s)	99, 108, 326
TspDTI	ATGAA	4 cut(s)	933, 1094, 1098, 1149
TspGWI	ACGGA	2 cut(s)	53, 439
TspRI	CASTG	3 cut(s)	547, 619, 808
Van91I	CCANNNNNTGG	1 cut(s)	1006
VpaK11BI	GGWCC	1 cut(s)	629
XagI	CCTNNNNNAGG	1 cut(s)	603
XapI	RAATTY	1 cut(s)	487
XhoI	CTCGAG	1 cut(s)	417
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	184
XspI	CTAG	3 cut(s)	90, 812, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.