Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010420

Physical Location & Seq

Genomic Coordinates Reverse (-)

14456781 .. 14459146

Gene Structure 2366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGGTACCGGTACCCCCATTCCGGGCATGCTCGGCGAAGTTCTGGATGTTTTCCCGGCGTCCAAACAACTCCGGTACCTCGTCGACTGCACTGTCGGAGCTCCGTGTTGATTACTGGCAGATAACTGAAGGGCATCCGGTAATGGAAGTGTATGTTGGGCTTGATGTCGATCCTGTGGCGCTTGAGAAGGCTCGAGCTCGGATCAACTCTGTTTTGCATGACCCGAATCCTTCGTCCCTCAAAGCTTACACCATTTTGGAGAATTTCAGATATGTGAAGTCTCTGCTTTGTGATGTGGATGAGACACTAGTTGAAACAGGGATTGATGGGATACGGATGGATTTGGGAATGTCGTCGATGCAAGTAAATGATCCTCAAAGAGGGTTCAGTGTGCTTGTTAATGGACCTCTTGATATGAGGATGGATCCTCAGGCAAGCCTGAAAGCTGAAGACATTTTGAACACTTGGCCAGATAATGAGGTAGGCTGCATCCTGCGAGACTATGGGGAAGAAAGCAACTGGTTCTCTCTTCAAAATAGAATTGTTAGAGCCCGATCACAGGGTGGATTGCATACCACTGGCGATTTTAACAAAGATCGATCTTATAAAAAGTGCAACTCTGCTGAGTCGAGGATGGCAAGGTTGGATGAAAACAGCTACAAGGGTGTTCAAGCTCAAGCTCTGAGGATAGCCGTGAACGATGAACTGAAGACTCTGGAGGATTCTCTTTATGCTTATTTTGACTGCCTTGCACCGGGTGGTAGGTTGGCAGTCGTCTCTTTACACAGTTTGGAGGACAGAATTGTGAAACAAACGTTTCTAGACATCATCAACGTCAAAGACAGAGATGTTGACGTTGACATGATTGAAGAAGCAGCGGGGAAGAAAGATTTGAGAGAGATCATGAGCGACATTGATGAAAACGAAGAATGGATCAAACAAACGGTACAGGGCTTGAGGGGAATAATTCTCACTAAGAGACCAATTACACGATCTGAAACGGAAGAGAGCCTCAACAGCCTAGCTAGAAGTGCCAAGCTTAGGGTGATTCAGAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_5

Protein Analysis

355

Amino Acids

40.01

Weight (kDa)

5.15

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10910
fragaria_vesca	FvH4_2g30630
malus_domestica	MD08G1133300.v1.1 MD15G1110800.v1.1
prunus_persica	Prupe.1G463000_v2.0.a1 Prupe.1G463000_v2.0.a1
pyrus_communis	pycom08g11220 pycom08g15000 pycom15g10120
rosa_chinensis	RchiOBHm_Chr6g0312281
rosa_laevigata	RLG00000010334 RLG00000010336
rosa_multiflora	Rmu_sc0020391.1_g000002 Rmu_ssc0000424.1_g000005 Rmu_ssc0000424.1_g000017
rosa_roxburghii	Rroxscaffold_7G00156870
rosa_rugosa	Rorug06G0394800
rosa_samantha	Rh6AG511700 Rh6CG528600 Rh6DG514500
rosa_wichuraiana	Rw6G044520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
AasI	GACNNNNNNGTC	1 cut(s)	94
Acc65I	GGTACC	3 cut(s)	7, 13, 77
AccB1I	GGYRCC	3 cut(s)	7, 13, 77
AccI	GTMKAC	1 cut(s)	86
AciI	CCGC	1 cut(s)	881
AclI	AACGTT	1 cut(s)	818
AclWI	GGATC	6 cut(s)	167, 212, 368, 422, 435, 944
AcoI	YGGCCR	1 cut(s)	470
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	3 cut(s)	150, 471, 731
AcyI	GRCGYC	1 cut(s)	61
AdeI	CACNNNGTG	2 cut(s)	566, 761
AfaI	GTAC	4 cut(s)	9, 15, 79, 951
AfiI	CCNNNNNNNGG	6 cut(s)	24, 25, 383, 562, 757, 1044
AgeI	ACCGGT	1 cut(s)	10
AgsI	TTSAA	5 cut(s)	317, 463, 536, 674, 872
AhlI	ACTAGT	1 cut(s)	310
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
Alw21I	GWGCWC	2 cut(s)	105, 202
Alw26I	GTCTC	5 cut(s)	288, 299, 495, 784, 976
AlwI	GGATC	6 cut(s)	167, 212, 368, 422, 435, 944
Ama87I	CYCGRG	1 cut(s)	195
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	2 cut(s)	489, 878
ApoI	RAATTY	1 cut(s)	265
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AsiGI	ACCGGT	1 cut(s)	10
Asp718I	GGTACC	3 cut(s)	7, 13, 77
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	3 cut(s)	26, 58, 759
AsuHPI	GGTGA	1 cut(s)	1060
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	407
AxyI	CCTNAGG	1 cut(s)	432
BaeI	ACNNNNGTAYC	2 cut(s)	61, 94
BalI	TGGCCA	1 cut(s)	472
BamHI	GGATCC	1 cut(s)	427
BanI	GGYRCC	3 cut(s)	7, 13, 77
BanII	GRGCYC	3 cut(s)	105, 202, 556
BbsI	GAAGAC	2 cut(s)	459, 719
Bbv12I	GWGCWC	2 cut(s)	105, 202
BbvI	GCAGC	2 cut(s)	476, 890
BccI	CCATC	4 cut(s)	323, 334, 418, 631
BceAI	ACGGC	1 cut(s)	680
BciVI	GTATCC	1 cut(s)	327
BcnI	CCSGG	3 cut(s)	26, 58, 759
BcoDI	GTCTC	5 cut(s)	288, 299, 495, 784, 976
BcuI	ACTAGT	1 cut(s)	310
BfaI	CTAG	4 cut(s)	311, 824, 1025, 1029
BfoI	RGCGCY	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	327
BisI	GCNGC	2 cut(s)	490, 879
BlsI	GCNGC	2 cut(s)	491, 880
Bme1390I	CCNGG	3 cut(s)	26, 58, 759
Bme18I	GGWCC	1 cut(s)	407
BmeT110I	CYCGRG	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	4 cut(s)	9, 15, 79, 429
BmrFI	CCNGG	3 cut(s)	26, 58, 759
BmsI	GCATC	3 cut(s)	145, 351, 501
BpiI	GAAGAC	2 cut(s)	459, 719
BpmI	CTGGAG	1 cut(s)	740
Bpu10I	CCTNAGC	1 cut(s)	1043
BpuEI	CTTGAG	3 cut(s)	206, 663, 979
BpuMI	CCSGG	3 cut(s)	26, 58, 759
Bsa29I	ATCGAT	1 cut(s)	601
BsaBI	GATNNNNATC	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	976
BsaWI	WCCGGW	3 cut(s)	10, 74, 139
Bsc4I	CCNNNNNNNGG	6 cut(s)	24, 25, 383, 562, 757, 1044
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	3 cut(s)	122, 527, 586
Bse21I	CCTNAGG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	171
BseCI	ATCGAT	1 cut(s)	601
BseGI	GGATG	8 cut(s)	54, 136, 307, 345, 429, 492, 642, 655
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	6 cut(s)	24, 25, 383, 562, 757, 1044
BseMII	CTCAG	3 cut(s)	446, 618, 677
BseNI	ACTGG	3 cut(s)	122, 527, 586
BseXI	GCAGC	2 cut(s)	476, 890
BsgI	GTGCAG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	472
BshNI	GGYRCC	3 cut(s)	7, 13, 77
BshTI	ACCGGT	1 cut(s)	10
BshVI	ATCGAT	1 cut(s)	601
BsiHKAI	GWGCWC	2 cut(s)	105, 202
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	6 cut(s)	11, 25, 58, 75, 140, 758
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	6 cut(s)	24, 25, 383, 562, 757, 1044
BsmAI	GTCTC	5 cut(s)	288, 299, 495, 784, 976
BsmBI	CGTCTC	1 cut(s)	784
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	472
Bso31I	GGTCTC	1 cut(s)	976
BsoBI	CYCGRG	1 cut(s)	195
Bsp1286I	GDGCHC	3 cut(s)	105, 202, 556
BspACI	CCGC	1 cut(s)	881
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	3 cut(s)	445, 619, 678
BspDI	ATCGAT	1 cut(s)	601
BspHI	TCATGA	1 cut(s)	906
BspLI	GGNNCC	4 cut(s)	9, 15, 79, 429
BspPI	GGATC	6 cut(s)	167, 212, 368, 422, 435, 944
BspT107I	GGYRCC	3 cut(s)	7, 13, 77
BspTNI	GGTCTC	1 cut(s)	976
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	3 cut(s)	122, 527, 586
BssAI	RCCGGY	1 cut(s)	10
BssNI	GRCGYC	1 cut(s)	61
Bst4CI	ACNGT	3 cut(s)	96, 791, 949
Bst6I	CTCTTC	2 cut(s)	537, 1002
BstACI	GRCGYC	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	31, 439
BstDEI	CTNAG	5 cut(s)	432, 627, 686, 978, 1043
BstENI	CCTNNNNNAGG	1 cut(s)	381
BstF5I	GGATG	8 cut(s)	54, 136, 307, 345, 429, 492, 642, 655
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstMAI	GTCTC	5 cut(s)	288, 299, 495, 784, 976
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 1020, 1034
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	3 cut(s)	24, 56, 757
BstV1I	GCAGC	2 cut(s)	476, 890
BstV2I	GAAGAC	2 cut(s)	459, 719
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
Bsu15I	ATCGAT	1 cut(s)	601
Bsu36I	CCTNAGG	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	472
BsuTUI	ATCGAT	1 cut(s)	601
BtsCI	GGATG	8 cut(s)	54, 136, 307, 345, 429, 492, 642, 655
BtsIMutI	CAGTG	3 cut(s)	92, 397, 579
Cac8I	GCNNGC	2 cut(s)	31, 439
CciI	TCATGA	1 cut(s)	906
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	407
ClaI	ATCGAT	1 cut(s)	601
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	4 cut(s)	8, 14, 78, 950
CspAI	ACCGGT	1 cut(s)	10
CviAII	CATG	4 cut(s)	30, 221, 865, 907
CviQI	GTAC	4 cut(s)	8, 14, 78, 950
DdeI	CTNAG	5 cut(s)	432, 627, 686, 978, 1043
DraIII	CACNNNGTG	2 cut(s)	566, 761
DrdI	GACNNNNNNGTC	1 cut(s)	94
DseDI	GACNNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	470
Eam1104I	CTCTTC	2 cut(s)	537, 1002
EarI	CTCTTC	2 cut(s)	537, 1002
Ecl136II	GAGCTC	2 cut(s)	103, 200
Eco24I	GRGCYC	3 cut(s)	105, 202, 556
Eco31I	GGTCTC	1 cut(s)	976
Eco47I	GGWCC	1 cut(s)	407
Eco53kI	GAGCTC	2 cut(s)	103, 200
Eco57I	CTGAAG	3 cut(s)	150, 471, 731
Eco81I	CCTNAGG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	195
EcoICRI	GAGCTC	2 cut(s)	103, 200
EcoNI	CCTNNNNNAGG	1 cut(s)	381
EcoT38I	GRGCYC	3 cut(s)	105, 202, 556
Esp3I	CGTCTC	1 cut(s)	784
FaeI	CATG	4 cut(s)	33, 224, 868, 910
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	4 cut(s)	29, 220, 864, 906
FauI	CCCGC	1 cut(s)	874
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	490, 879
FokI	GGATG	8 cut(s)	61, 123, 314, 352, 436, 479, 649, 662
FriOI	GRGCYC	3 cut(s)	105, 202, 556
Fsp4HI	GCNGC	2 cut(s)	490, 879
FspBI	CTAG	4 cut(s)	311, 824, 1025, 1029
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	2 cut(s)	490, 879
GsuI	CTGGAG	1 cut(s)	740
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	472
HapII	CCGG	6 cut(s)	11, 25, 58, 75, 140, 758
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	4 cut(s)	33, 224, 868, 910
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	3 cut(s)	87, 856, 862
HindII	GTYRAC	3 cut(s)	87, 856, 862
HindIII	AAGCTT	3 cut(s)	246, 1040, 1058
HinfI	GANTC	5 cut(s)	229, 629, 715, 725, 1051
HpaII	CCGG	6 cut(s)	11, 25, 58, 75, 140, 758
HphI	GGTGA	1 cut(s)	1060
Hpy166II	GTNNAC	4 cut(s)	87, 700, 856, 862
Hpy188I	TCNGA	6 cut(s)	100, 204, 272, 687, 1000, 1056
Hpy188III	TCNNGA	5 cut(s)	46, 413, 719, 824, 907
Hpy8I	GTNNAC	4 cut(s)	87, 700, 856, 862
Hpy99I	CGWCG	2 cut(s)	88, 361
HpyAV	CCTTC	3 cut(s)	125, 184, 243
HpyCH4III	ACNGT	3 cut(s)	96, 791, 949
HpyCH4IV	ACGT	3 cut(s)	818, 837, 858
HpyCH4V	TGCA	7 cut(s)	92, 220, 364, 492, 574, 618, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 1020, 1034
HpyF3I	CTNAG	5 cut(s)	432, 627, 686, 978, 1043
HpySE526I	ACGT	3 cut(s)	818, 837, 858
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	4 cut(s)	33, 224, 868, 910
HspAI	GCGC	1 cut(s)	182
KpnI	GGTACC	3 cut(s)	11, 17, 81
LmnI	GCTCC	2 cut(s)	100, 108
Lsp1109I	GCAGC	2 cut(s)	476, 890
LweI	GCATC	3 cut(s)	145, 351, 501
MaeI	CTAG	4 cut(s)	311, 824, 1025, 1029
MaeII	ACGT	3 cut(s)	818, 837, 858
MboII	GAAGA	8 cut(s)	464, 524, 524, 724, 884, 898, 941, 1019
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	3 cut(s)	105, 202, 556
MlsI	TGGCCA	1 cut(s)	472
MluCI	AATT	5 cut(s)	265, 543, 804, 969, 987
MluNI	TGGCCA	1 cut(s)	472
MlyI	GAGTC	2 cut(s)	638, 709
MmeI	TCCRAC	2 cut(s)	78, 627
Mox20I	TGGCCA	1 cut(s)	472
MscI	TGGCCA	1 cut(s)	472
MseI	TTAA	3 cut(s)	402, 591, 1063
Msp20I	TGGCCA	1 cut(s)	472
MspA1I	CMGCKG	1 cut(s)	881
MspI	CCGG	6 cut(s)	11, 25, 58, 75, 140, 758
MspR9I	CCNGG	3 cut(s)	26, 58, 759
MwoI	GCNNNNNNNGC	3 cut(s)	35, 1020, 1034
NciI	CCSGG	3 cut(s)	26, 58, 759
NlaIII	CATG	4 cut(s)	33, 224, 868, 910
NlaIV	GGNNCC	4 cut(s)	9, 15, 79, 429
NmeAIII	GCCGAG	1 cut(s)	14
NspI	RCATGY	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	33
PaeR7I	CTCGAG	1 cut(s)	195
PagI	TCATGA	1 cut(s)	906
PfeI	GAWTC	3 cut(s)	229, 725, 1051
PinAI	ACCGGT	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	491, 880
PleI	GAGTC	2 cut(s)	637, 709
PpsI	GAGTC	2 cut(s)	637, 709
PsiI	TTATAA	1 cut(s)	609
Psp124BI	GAGCTC	2 cut(s)	105, 202
Psp1406I	AACGTT	1 cut(s)	818
PspN4I	GGNNCC	4 cut(s)	9, 15, 79, 429
PspPI	GGNCC	1 cut(s)	407
PspXI	VCTCGAGB	1 cut(s)	195
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	4 cut(s)	9, 15, 79, 951
RsaNI	GTAC	4 cut(s)	8, 14, 78, 950
SacI	GAGCTC	2 cut(s)	105, 202
SalI	GTCGAC	1 cut(s)	85
SaqAI	TTAA	3 cut(s)	402, 591, 1063
SatI	GCNGC	2 cut(s)	490, 879
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	2 cut(s)	638, 709
ScrFI	CCNGG	3 cut(s)	26, 58, 759
SduI	GDGCHC	3 cut(s)	105, 202, 556
SfaNI	GCATC	3 cut(s)	145, 351, 501
Sfr274I	CTCGAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	407
SlaI	CTCGAG	1 cut(s)	195
SmlI	CTYRAG	4 cut(s)	185, 195, 678, 958
SmoI	CTYRAG	4 cut(s)	185, 195, 678, 958
SpeI	ACTAGT	1 cut(s)	310
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	5 cut(s)	265, 543, 804, 969, 987
SsiI	CCGC	1 cut(s)	881
SspMI	CTAG	4 cut(s)	311, 824, 1025, 1029
SstI	GAGCTC	2 cut(s)	105, 202
StyD4I	CCNGG	3 cut(s)	24, 56, 757
TaaI	ACNGT	3 cut(s)	96, 791, 949
TaiI	ACGT	3 cut(s)	821, 840, 861
TaqI	TCGA	6 cut(s)	86, 171, 196, 359, 601, 632
TasI	AATT	5 cut(s)	265, 543, 804, 969, 987
TfiI	GAWTC	3 cut(s)	229, 725, 1051
Tru1I	TTAA	3 cut(s)	402, 591, 1063
Tru9I	TTAA	3 cut(s)	402, 591, 1063
TscAI	CASTG	3 cut(s)	99, 397, 586
TseI	GCWGC	2 cut(s)	489, 878
TspDTI	ATGAA	3 cut(s)	666, 720, 936
TspGWI	ACGGA	3 cut(s)	95, 352, 1019
TspRI	CASTG	3 cut(s)	99, 397, 586
VpaK11BI	GGWCC	1 cut(s)	407
XagI	CCTNNNNNAGG	1 cut(s)	381
XapI	RAATTY	1 cut(s)	265
XbaI	TCTAGA	1 cut(s)	823
XceI	RCATGY	1 cut(s)	33
XhoI	CTCGAG	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	86
XspI	CTAG	4 cut(s)	311, 824, 1025, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.