Rmu_ssc0000424.1_g000005

Ribosomal RNA small subunit methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000424.1
Physical Location & Seq
Forward (+)
26340 .. 28132
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000424.1_g000005.1.cds

Sequence Viewer

Length: 1173 bp
atggcaacagcagcttcactgtcaactccagcatcaagaatcttctctctctcttccttatcactccgcctccgaagcctcacatccgccgcccacagtctcagtctcagtcggagcaccaccactagtaagaagaagaagcagcagcagcagaagcagaagcagagagtcgccgtcaaagaaaagagaagaactcgctccgaccgagagttcgacatcaaccgttatggagactccgctttccacatcccagtcctgctcggcgaagtcatcgacgttttcccgccctccaaacctctccggcgtttcgtcgactgcaccgtcggagctgccggccactcttccgcgataattgaagggcaccctgaaatgcaagtgtatgtgggacttgatgttgatcctgtggcgctggagaaggctcgagctcggatcaattctgtgttgaacgacccaagttcgaccctgaaagcttatacatttttggagaattttagatacatcaagtctttgcttactgacgtggatgacacactccttgacaccggaattgatggcattttgatggatttaggaatgtcttcgatgcaggtgaatgatcctcagagaggcttcagtgtgcttgctaatgggcctcttgatatgcgcatggatcctcaggcaagtctgaaggcagaagacattttaaactcttggccagaaactgaggtggggcgcatcctgcgagactatggggaagaaagcaattggtactctcttcaaaacaaaatagttaaagcacgcttacaaggtggattgcattccactggtgaactagtagatcttataaaatctgcaactcctctaagtcgagaagggaggcaaggttggattaagacagcaacaagggtgtttcaagctccgaggatagcagttaacgatgagttgaagactttggaggattctctttattcatgctttgactgcctggcacctggtggtaggctagcagtcatctctttccacagtttggaggacacaattgtgaaacaaacatttcttgacatcatcaacatcaaaggaggagatggggacgcttacatgattgaagaaagagagcggaagcaagatttgagaaagatcagaatagacattgatgaagacgaaatgtggcttgagaggaacaattctcactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

390

Amino Acids

43.67

Weight (kDa)

6.42

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 824
AarI CACCTGC 1 cut(s) 577
AasI GACNNNNNNGTC 1 cut(s) 320
Acc16I TGCGCA 1 cut(s) 644
Acc36I ACCTGC 1 cut(s) 577
AccB1I GGYRCC 2 cut(s) 360, 967
AccB7I CCANNNNNTGG 1 cut(s) 1006
AccBSI CCGCTC 1 cut(s) 1096
AccI GTMKAC 1 cut(s) 312
AccII CGCG 1 cut(s) 347
AciI CCGC 7 cut(s) 67, 87, 90, 237, 284, 345, 1096
AclWI GGATC 5 cut(s) 392, 437, 590, 644, 657
AcoI YGGCCR 2 cut(s) 334, 692
AcsI RAATTY 1 cut(s) 487
AcuI CTGAAG 2 cut(s) 595, 686
AdeI CACNNNGTG 1 cut(s) 974
AfaI GTAC 1 cut(s) 749
AfiI CCNNNNNNNGG 2 cut(s) 605, 1006
AgsI TTSAA 6 cut(s) 356, 445, 758, 893, 925, 1085
AhlI ACTAGT 2 cut(s) 125, 811
AjiI CACGTC 1 cut(s) 520
AjnI CCWGG 2 cut(s) 963, 970
AleI CACNNNNGTG 1 cut(s) 1019
AluBI AGCT 5 cut(s) 14, 329, 425, 470, 896
AluI AGCT 5 cut(s) 14, 329, 425, 470, 896
Alw21I GWGCWC 2 cut(s) 119, 427
Alw26I GTCTC 4 cut(s) 104, 110, 225, 717
AlwI GGATC 5 cut(s) 392, 437, 590, 644, 657
AlwNI CAGNNNCTG 1 cut(s) 701
Ama87I CYCGRG 1 cut(s) 420
AoxI GGCC 3 cut(s) 334, 629, 692
ApeKI GCWGC 5 cut(s) 11, 142, 145, 148, 329
ApoI RAATTY 1 cut(s) 487
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
Asp700I GAANNNNTTC 1 cut(s) 577
AspLEI GCGC 3 cut(s) 409, 645, 714
AspS9I GGNCC 1 cut(s) 629
AsuHPI GGTGA 2 cut(s) 601, 818
AsuNHI GCTAGC 1 cut(s) 982
AvaI CYCGRG 1 cut(s) 420
AxyI CCTNAGG 1 cut(s) 654
BaeGI GKGCMC 1 cut(s) 363
BalI TGGCCA 1 cut(s) 694
BamHI GGATCC 1 cut(s) 649
BanI GGYRCC 2 cut(s) 360, 967
BanII GRGCYC 1 cut(s) 427
BbsI GAAGAC 4 cut(s) 570, 681, 932, 1143
Bbv12I GWGCWC 2 cut(s) 119, 427
BbvI GCAGC 5 cut(s) 23, 154, 157, 160, 316
BccI CCATC 3 cut(s) 545, 556, 1058
BceAI ACGGC 1 cut(s) 158
BciT130I CCWGG 2 cut(s) 965, 972
BcoDI GTCTC 4 cut(s) 104, 110, 225, 717
BcuI ACTAGT 2 cut(s) 125, 811
BfaI CTAG 3 cut(s) 126, 812, 983
BfoI RGCGCY 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 577
BglII AGATCT 1 cut(s) 817
BisI GCNGC 6 cut(s) 12, 90, 143, 146, 149, 330
BlsI GCNGC 6 cut(s) 13, 91, 144, 147, 150, 331
Bme1390I CCNGG 2 cut(s) 965, 972
BmeT110I CYCGRG 1 cut(s) 420
BmgBI CACGTC 1 cut(s) 520
BmgT120I GGNCC 1 cut(s) 629
BmiI GGNNCC 3 cut(s) 362, 651, 969
BmrFI CCNGG 2 cut(s) 965, 972
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 3 cut(s) 41, 573, 723
BmtI GCTAGC 1 cut(s) 986
BmuI ACTGGG 1 cut(s) 245
BpiI GAAGAC 4 cut(s) 570, 681, 932, 1143
BplI GAGNNNNNCTC 2 cut(s) 178, 210
BpmI CTGGAG 2 cut(s) 12, 431
BpuEI CTTGAG 1 cut(s) 1172
BsaBI GATNNNNATC 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 899
BsaWI WCCGGW 1 cut(s) 542
BsaXI ACNNNNNCTCC 4 cut(s) 54, 84, 847, 877
Bsc4I CCNNNNNNNGG 2 cut(s) 605, 1006
Bse118I RCCGGY 1 cut(s) 332
Bse1I ACTGG 2 cut(s) 251, 808
Bse21I CCTNAGG 1 cut(s) 654
Bse8I GATNNNNATC 1 cut(s) 396
BseBI CCWGG 2 cut(s) 965, 972
BseDI CCNNGG 1 cut(s) 899
BseGI GGATG 4 cut(s) 83, 246, 529, 714
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 2 cut(s) 605, 1006
BseMII CTCAG 5 cut(s) 115, 121, 614, 668, 693
BseNI ACTGG 2 cut(s) 251, 808
BseRI GAGGAG 2 cut(s) 828, 1074
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 5 cut(s) 23, 154, 157, 160, 316
BsgI GTGCAG 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 347
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 3 cut(s) 336, 631, 694
BshNI GGYRCC 2 cut(s) 360, 967
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 2 cut(s) 119, 427
BsiHKCI CYCGRG 1 cut(s) 420
BsiSI CCGG 3 cut(s) 301, 333, 543
BslFI GGGAC 2 cut(s) 399, 1082
BslI CCNNNNNNNGG 2 cut(s) 605, 1006
BsmAI GTCTC 4 cut(s) 104, 110, 225, 717
BsmFI GGGAC 2 cut(s) 399, 1082
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 3 cut(s) 336, 631, 694
BsoBI CYCGRG 1 cut(s) 420
Bsp1286I GDGCHC 3 cut(s) 119, 363, 427
Bsp143I GATC 6 cut(s) 397, 429, 595, 649, 817, 1116
BspACI CCGC 7 cut(s) 67, 87, 90, 237, 284, 345, 1096
BspANI GGCC 3 cut(s) 336, 631, 694
BspCNI CTCAG 5 cut(s) 114, 120, 613, 667, 694
BspFNI CGCG 1 cut(s) 347
BspLI GGNNCC 3 cut(s) 362, 651, 969
BspMI ACCTGC 1 cut(s) 577
BspOI GCTAGC 1 cut(s) 986
BspPI GGATC 5 cut(s) 392, 437, 590, 644, 657
BspT107I GGYRCC 2 cut(s) 360, 967
BsrBI CCGCTC 1 cut(s) 1096
BsrFI RCCGGY 1 cut(s) 332
BsrI ACTGG 2 cut(s) 251, 808
BssAI RCCGGY 1 cut(s) 332
BssECI CCNNGG 1 cut(s) 899
BssMI GATC 6 cut(s) 397, 429, 595, 649, 817, 1116
Bst2UI CCWGG 2 cut(s) 965, 972
Bst4CI ACNGT 5 cut(s) 21, 98, 224, 322, 1004
Bst6I CTCTTC 3 cut(s) 58, 346, 759
BstC8I GCNNGC 4 cut(s) 334, 621, 778, 984
BstDEI CTNAG 6 cut(s) 101, 107, 600, 654, 702, 842
BstENI CCTNNNNNAGG 1 cut(s) 603
BstF5I GGATG 4 cut(s) 83, 246, 529, 714
BstFNI CGCG 1 cut(s) 347
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 3 cut(s) 409, 645, 714
BstKTI GATC 6 cut(s) 400, 432, 598, 652, 820, 1119
BstMAI GTCTC 4 cut(s) 104, 110, 225, 717
BstMBI GATC 6 cut(s) 397, 429, 595, 649, 817, 1116
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 6 cut(s) 11, 75, 148, 154, 718, 960
BstNI CCWGG 2 cut(s) 965, 972
BstSCI CCNGG 2 cut(s) 963, 970
BstSLI GKGCMC 1 cut(s) 363
BstUI CGCG 1 cut(s) 347
BstV1I GCAGC 5 cut(s) 23, 154, 157, 160, 316
BstV2I GAAGAC 4 cut(s) 570, 681, 932, 1143
BstX2I RGATCY 2 cut(s) 649, 817
BstYI RGATCY 2 cut(s) 649, 817
Bsu36I CCTNAGG 1 cut(s) 654
BsuRI GGCC 3 cut(s) 336, 631, 694
BtrI CACGTC 1 cut(s) 520
BtsCI GGATG 4 cut(s) 83, 246, 529, 714
BtsIMutI CAGTG 3 cut(s) 17, 619, 801
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 4 cut(s) 334, 621, 778, 984
CaiI CAGNNNCTG 1 cut(s) 701
CfoI GCGC 3 cut(s) 409, 645, 714
Cfr10I RCCGGY 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 629
CseI GACGC 1 cut(s) 1079
CsiI ACCWGGT 1 cut(s) 970
Csp6I GTAC 1 cut(s) 748
CviAII CATG 3 cut(s) 646, 951, 1078
CviQI GTAC 1 cut(s) 748
DdeI CTNAG 6 cut(s) 101, 107, 600, 654, 702, 842
DpnI GATC 6 cut(s) 399, 431, 597, 651, 819, 1118
DpnII GATC 6 cut(s) 397, 429, 595, 649, 817, 1116
DraI TTTAAA 1 cut(s) 684
DraIII CACNNNGTG 1 cut(s) 974
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
EaeI YGGCCR 2 cut(s) 334, 692
Eam1104I CTCTTC 3 cut(s) 58, 346, 759
EarI CTCTTC 3 cut(s) 58, 346, 759
EciI GGCGGA 2 cut(s) 56, 76
Ecl136II GAGCTC 1 cut(s) 425
Eco24I GRGCYC 1 cut(s) 427
Eco53kI GAGCTC 1 cut(s) 425
Eco57I CTGAAG 2 cut(s) 595, 686
Eco81I CCTNAGG 1 cut(s) 654
Eco88I CYCGRG 1 cut(s) 420
EcoICRI GAGCTC 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 603
EcoRII CCWGG 2 cut(s) 963, 970
EcoT38I GRGCYC 1 cut(s) 427
FaeI CATG 3 cut(s) 649, 954, 1081
FaiI YATR 9 cut(s) 228, 381, 474, 641, 647, 729, 824, 952, 1079
FaqI GGGAC 2 cut(s) 399, 1082
FatI CATG 3 cut(s) 645, 950, 1077
FauI CCCGC 1 cut(s) 291
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 6 cut(s) 12, 90, 143, 146, 149, 330
FokI GGATG 4 cut(s) 70, 233, 536, 701
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 6 cut(s) 12, 90, 143, 146, 149, 330
FspAI RTGCGCAY 1 cut(s) 644
FspBI CTAG 3 cut(s) 126, 812, 983
FspI TGCGCA 1 cut(s) 644
GlaI GCGC 3 cut(s) 408, 644, 713
GluI GCNGC 6 cut(s) 12, 90, 143, 146, 149, 330
GsuI CTGGAG 2 cut(s) 12, 431
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 3 cut(s) 336, 631, 694
HapII CCGG 3 cut(s) 301, 333, 543
HgaI GACGC 1 cut(s) 1079
HhaI GCGC 3 cut(s) 409, 645, 714
Hin1II CATG 3 cut(s) 649, 954, 1081
Hin6I GCGC 3 cut(s) 407, 643, 712
HinP1I GCGC 3 cut(s) 407, 643, 712
HincII GTYRAC 3 cut(s) 24, 313, 913
HindII GTYRAC 3 cut(s) 24, 313, 913
HindIII AAGCTT 1 cut(s) 468
HinfI GANTC 4 cut(s) 39, 168, 233, 938
HpaI GTTAAC 1 cut(s) 913
HpaII CCGG 3 cut(s) 301, 333, 543
HphI GGTGA 2 cut(s) 601, 818
Hpy166II GTNNAC 4 cut(s) 24, 313, 809, 913
Hpy188I TCNGA 9 cut(s) 74, 114, 202, 326, 429, 603, 666, 900, 1121
Hpy188III TCNNGA 4 cut(s) 36, 635, 848, 1037
Hpy8I GTNNAC 4 cut(s) 24, 313, 809, 913
Hpy99I CGWCG 3 cut(s) 278, 314, 326
HpyAV CCTTC 4 cut(s) 350, 409, 661, 845
HpyCH4III ACNGT 5 cut(s) 21, 98, 224, 322, 1004
HpyCH4IV ACGT 2 cut(s) 276, 519
HpyCH4V TGCA 5 cut(s) 318, 373, 586, 796, 833
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 75, 148, 154, 718, 960
HpyF3I CTNAG 6 cut(s) 101, 107, 600, 654, 702, 842
HpySE526I ACGT 2 cut(s) 276, 519
Hsp92II CATG 3 cut(s) 649, 954, 1081
HspAI GCGC 3 cut(s) 407, 643, 712
KroI GCCGGC 1 cut(s) 332
KroNI GCCGGC 1 cut(s) 334
KspAI GTTAAC 1 cut(s) 913
Kzo9I GATC 6 cut(s) 397, 429, 595, 649, 817, 1116
LmnI GCTCC 4 cut(s) 114, 203, 326, 901
Lsp1109I GCAGC 5 cut(s) 23, 154, 157, 160, 316
LweI GCATC 3 cut(s) 41, 573, 723
MabI ACCWGGT 1 cut(s) 970
MaeI CTAG 3 cut(s) 126, 812, 983
MaeII ACGT 2 cut(s) 276, 519
MalI GATC 6 cut(s) 399, 431, 597, 651, 819, 1118
MbiI CCGCTC 1 cut(s) 1096
MboI GATC 6 cut(s) 397, 429, 595, 649, 817, 1116
MfeI CAATTG 2 cut(s) 742, 1017
MflI RGATCY 2 cut(s) 649, 817
MhlI GDGCHC 3 cut(s) 119, 363, 427
MlsI TGGCCA 1 cut(s) 694
MluCI AATT 7 cut(s) 351, 433, 487, 546, 742, 1017, 1162
MluNI TGGCCA 1 cut(s) 694
MlyI GAGTC 2 cut(s) 177, 227
MmeI TCCRAC 4 cut(s) 92, 225, 304, 845
Mox20I TGGCCA 1 cut(s) 694
MroNI GCCGGC 1 cut(s) 332
MroXI GAANNNNTTC 1 cut(s) 577
MscI TGGCCA 1 cut(s) 694
MseI TTAA 4 cut(s) 683, 771, 870, 912
MslI CAYNNNNRTG 2 cut(s) 560, 1019
Msp20I TGGCCA 1 cut(s) 694
MspI CCGG 3 cut(s) 301, 333, 543
MspR9I CCNGG 2 cut(s) 965, 972
MunI CAATTG 2 cut(s) 742, 1017
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 2 cut(s) 965, 972
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 6 cut(s) 11, 75, 148, 154, 718, 960
NaeI GCCGGC 1 cut(s) 334
NdeII GATC 6 cut(s) 397, 429, 595, 649, 817, 1116
NgoMIV GCCGGC 1 cut(s) 332
NheI GCTAGC 1 cut(s) 982
NlaIII CATG 3 cut(s) 649, 954, 1081
NlaIV GGNNCC 3 cut(s) 362, 651, 969
NmeAIII GCCGAG 1 cut(s) 240
NsbI TGCGCA 1 cut(s) 644
OliI CACNNNNGTG 1 cut(s) 1019
PaeR7I CTCGAG 1 cut(s) 420
PaqCI CACCTGC 1 cut(s) 577
PcsI WCGNNNNNNNCGW 2 cut(s) 202, 318
PctI GAATGC 1 cut(s) 796
PdiI GCCGGC 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 577
PfeI GAWTC 2 cut(s) 39, 938
PflMI CCANNNNNTGG 1 cut(s) 1006
PkrI GCNGC 6 cut(s) 13, 91, 144, 147, 150, 331
PleI GAGTC 2 cut(s) 176, 227
PpsI GAGTC 2 cut(s) 176, 227
PsiI TTATAA 1 cut(s) 824
Psp124BI GAGCTC 1 cut(s) 427
Psp6I CCWGG 2 cut(s) 963, 970
PspGI CCWGG 2 cut(s) 963, 970
PspN4I GGNNCC 3 cut(s) 362, 651, 969
PspPI GGNCC 1 cut(s) 629
PspXI VCTCGAGB 1 cut(s) 420
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 2 cut(s) 649, 817
RsaI GTAC 1 cut(s) 749
RsaNI GTAC 1 cut(s) 748
RseI CAYNNNNRTG 2 cut(s) 560, 1019
SacI GAGCTC 1 cut(s) 427
SalI GTCGAC 1 cut(s) 311
SaqAI TTAA 4 cut(s) 683, 771, 870, 912
SatI GCNGC 6 cut(s) 12, 90, 143, 146, 149, 330
Sau3AI GATC 6 cut(s) 397, 429, 595, 649, 817, 1116
Sau96I GGNCC 1 cut(s) 629
SchI GAGTC 2 cut(s) 177, 227
ScrFI CCNGG 2 cut(s) 965, 972
SduI GDGCHC 3 cut(s) 119, 363, 427
SexAI ACCWGGT 1 cut(s) 970
SfaNI GCATC 3 cut(s) 41, 573, 723
Sfr274I CTCGAG 1 cut(s) 420
SlaI CTCGAG 1 cut(s) 420
SmiMI CAYNNNNRTG 2 cut(s) 560, 1019
SmlI CTYRAG 2 cut(s) 420, 1151
SmoI CTYRAG 2 cut(s) 420, 1151
SpeI ACTAGT 2 cut(s) 125, 811
Sse9I AATT 7 cut(s) 351, 433, 487, 546, 742, 1017, 1162
SsiI CCGC 7 cut(s) 67, 87, 90, 237, 284, 345, 1096
SspMI CTAG 3 cut(s) 126, 812, 983
SstI GAGCTC 1 cut(s) 427
StyD4I CCNGG 2 cut(s) 963, 970
TaaI ACNGT 5 cut(s) 21, 98, 224, 322, 1004
TaiI ACGT 2 cut(s) 279, 522
TaqI TCGA 7 cut(s) 213, 273, 312, 421, 458, 581, 847
TaqII GACCGA 1 cut(s) 219
TasI AATT 7 cut(s) 351, 433, 487, 546, 742, 1017, 1162
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 2 cut(s) 39, 938
Tru1I TTAA 4 cut(s) 683, 771, 870, 912
Tru9I TTAA 4 cut(s) 683, 771, 870, 912
TscAI CASTG 3 cut(s) 24, 619, 808
TseI GCWGC 5 cut(s) 11, 142, 145, 148, 329
TspDTI ATGAA 2 cut(s) 939, 1149
TspRI CASTG 3 cut(s) 24, 619, 808
Van91I CCANNNNNTGG 1 cut(s) 1006
XagI CCTNNNNNAGG 1 cut(s) 603
XapI RAATTY 1 cut(s) 487
XhoI CTCGAG 1 cut(s) 420
XmiI GTMKAC 1 cut(s) 312
XmnI GAANNNNTTC 1 cut(s) 577
XspI CTAG 3 cut(s) 126, 812, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.