Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010420

Physical Location & Seq

Genomic Coordinates Reverse (-)

765868 .. 767344

Gene Structure 1477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010334

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTCGTGGATGCAAGTGAATGATCCTCAGAGAGGGTTCAGTGTGCCTGCTGATGGGCCTCTTGATATGCGTATGGATCCTCAGGTTCCGTTCATCACAAACAGAGAAAGTATCAATAAGGCCACAGTTGAGCCATATCAGGAGCAGCCTGGTTGTCCTGAGTCTTGCACCATGTTAACCAATTGGTACTCTCTTCAAAACAAAATAGTTAAAGCACGCTTACAAGGTGGATTGCATTCCACTGGTGAACTAGTAGATCTTATAAAATCTGCAACTCCTCTAAGTCGAGAAGGGAGGCAAGGTTGGATTAAGACAGCAACAAGGGTGTTTCAAGCTCTGAGGATAGCAGTTAACAATGAGTTGAAGACTCTGGAGGATTCTCTTTATTCATGCCTTGACTGCCTGGCACCTGGTGGTAGGCTAGCAGTCATCTCTTTCCACAGTTTGGAGGATAGAATTGTGAAACAAACATTTCTTGACATCATCAACATCAAAGGAGGAGATGGGGACGCTTACATGATTGAAGAAAGAGAGCGGAAGCAAGATTTGAGAAAGAACAGAATAGACATTGATGAAGACAAAATGTCGGTCAAACAAATGTTACAGGGTTTGAGAGGAATAATTCTCACTAAGAGACCAATTATGCCATCTGAAGAGGAAGAGAAACTGAACACTCGGTGTAGGAGTGCCAAGCTTAGGGTGATTCAGAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_5

Protein Analysis

239

Amino Acids

27.06

Weight (kDa)

8.56

Isoelectric Point (pI)

62.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_5	PF01795	2 - 160	1.4e-37	MraW methylase family
Methyltransf_5	PF01795	175 - 237	1e-07	MraW methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10910
fragaria_vesca	FvH4_2g30630
malus_domestica	MD08G1133300.v1.1 MD15G1110800.v1.1
prunus_persica	Prupe.1G463000_v2.0.a1 Prupe.1G463000_v2.0.a1
pyrus_communis	pycom08g11220 pycom08g15000 pycom15g10120
rosa_chinensis	RchiOBHm_Chr6g0312281
rosa_laevigata	RLG00000010334 RLG00000010336
rosa_multiflora	Rmu_sc0020391.1_g000002 Rmu_ssc0000424.1_g000005 Rmu_ssc0000424.1_g000017
rosa_roxburghii	Rroxscaffold_7G00156870
rosa_rugosa	Rorug06G0394800
rosa_samantha	Rh6AG511700 Rh6CG528600 Rh6DG514500
rosa_wichuraiana	Rw6G044520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	406
AccB7I	CCANNNNNTGG	1 cut(s)	445
AccBSI	CCGCTC	1 cut(s)	535
AciI	CCGC	1 cut(s)	535
AclWI	GGATC	3 cut(s)	17, 71, 84
AcuI	CTGAAG	1 cut(s)	672
AdeI	CACNNNGTG	2 cut(s)	413, 678
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	4 cut(s)	32, 53, 445, 696
AgsI	TTSAA	4 cut(s)	197, 332, 364, 524
AhdI	GACNNNNNGTC	1 cut(s)	583
AhlI	ACTAGT	1 cut(s)	250
AjnI	CCWGG	3 cut(s)	148, 402, 409
AluBI	AGCT	2 cut(s)	335, 694
AluI	AGCT	2 cut(s)	335, 694
Alw26I	GTCTC	1 cut(s)	628
AlwI	GGATC	3 cut(s)	17, 71, 84
AoxI	GGCC	2 cut(s)	56, 120
ApeKI	GCWGC	1 cut(s)	145
ArsI	GACNNNNNNTTYG	2 cut(s)	573, 605
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	257, 712
AsuNHI	GCTAGC	1 cut(s)	421
AxyI	CCTNAGG	1 cut(s)	81
BamHI	GGATCC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	406
BbsI	GAAGAC	2 cut(s)	371, 582
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	3 cut(s)	47, 497, 655
BciT130I	CCWGG	3 cut(s)	150, 404, 411
BcoDI	GTCTC	1 cut(s)	628
BcuI	ACTAGT	1 cut(s)	250
BfaI	CTAG	2 cut(s)	251, 422
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
Bme1390I	CCNGG	3 cut(s)	150, 404, 411
BmeRI	GACNNNNNGTC	1 cut(s)	583
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	3 cut(s)	78, 87, 408
BmrFI	CCNGG	3 cut(s)	150, 404, 411
BmtI	GCTAGC	1 cut(s)	425
BpiI	GAAGAC	2 cut(s)	371, 582
BpmI	CTGGAG	1 cut(s)	392
Bpu10I	CCTNAGC	1 cut(s)	695
BsaI	GGTCTC	1 cut(s)	628
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 53, 445, 696
Bse1I	ACTGG	1 cut(s)	247
Bse21I	CCTNAGG	1 cut(s)	81
BseBI	CCWGG	3 cut(s)	150, 404, 411
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	4 cut(s)	32, 53, 445, 696
BseMII	CTCAG	4 cut(s)	41, 95, 150, 329
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	2 cut(s)	267, 513
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	2 cut(s)	58, 122
BshNI	GGYRCC	1 cut(s)	406
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	4 cut(s)	32, 53, 445, 696
BsmAI	GTCTC	1 cut(s)	628
BsmFI	GGGAC	1 cut(s)	521
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	58, 122
Bso31I	GGTCTC	1 cut(s)	628
Bsp143I	GATC	3 cut(s)	22, 76, 256
BspACI	CCGC	1 cut(s)	535
BspANI	GGCC	2 cut(s)	58, 122
BspCNI	CTCAG	4 cut(s)	40, 94, 151, 330
BspLI	GGNNCC	3 cut(s)	78, 87, 408
BspOI	GCTAGC	1 cut(s)	425
BspPI	GGATC	3 cut(s)	17, 71, 84
BspT107I	GGYRCC	1 cut(s)	406
BspTNI	GGTCTC	1 cut(s)	628
BsrBI	CCGCTC	1 cut(s)	535
BsrI	ACTGG	1 cut(s)	247
BssMI	GATC	3 cut(s)	22, 76, 256
Bst2UI	CCWGG	3 cut(s)	150, 404, 411
Bst4CI	ACNGT	2 cut(s)	127, 443
Bst6I	CTCTTC	3 cut(s)	198, 648, 654
BstC8I	GCNNGC	3 cut(s)	48, 217, 423
BstDEI	CTNAG	7 cut(s)	27, 81, 159, 281, 338, 630, 695
BstENI	CCTNNNNNAGG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	15
BstKTI	GATC	3 cut(s)	25, 79, 259
BstMAI	GTCTC	1 cut(s)	628
BstMBI	GATC	3 cut(s)	22, 76, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	399
BstNI	CCWGG	3 cut(s)	150, 404, 411
BstSCI	CCNGG	3 cut(s)	148, 402, 409
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	2 cut(s)	371, 582
BstX2I	RGATCY	2 cut(s)	76, 256
BstYI	RGATCY	2 cut(s)	76, 256
Bsu36I	CCTNAGG	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	58, 122
BtsCI	GGATG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	46, 240
Cac8I	GCNNGC	3 cut(s)	48, 217, 423
Cfr13I	GGNCC	1 cut(s)	56
CseI	GACGC	1 cut(s)	518
CsiI	ACCWGGT	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	3 cut(s)	172, 390, 517
CviJI	RGCY	7 cut(s)	58, 122, 133, 148, 335, 421, 694
CviKI_1	RGCY	7 cut(s)	58, 122, 133, 148, 335, 421, 694
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	7 cut(s)	27, 81, 159, 281, 338, 630, 695
DpnI	GATC	3 cut(s)	24, 78, 258
DpnII	GATC	3 cut(s)	22, 76, 256
DraIII	CACNNNGTG	2 cut(s)	413, 678
DriI	GACNNNNNGTC	1 cut(s)	583
Eam1104I	CTCTTC	3 cut(s)	198, 648, 654
Eam1105I	GACNNNNNGTC	1 cut(s)	583
EarI	CTCTTC	3 cut(s)	198, 648, 654
Eco31I	GGTCTC	1 cut(s)	628
Eco57I	CTGAAG	1 cut(s)	672
Eco81I	CCTNAGG	1 cut(s)	81
EcoNI	CCTNNNNNAGG	1 cut(s)	30
EcoRII	CCWGG	3 cut(s)	148, 402, 409
FaeI	CATG	3 cut(s)	175, 393, 520
FaiI	YATR	8 cut(s)	68, 74, 136, 173, 263, 391, 518, 644
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	3 cut(s)	171, 389, 516
Fnu4HI	GCNGC	1 cut(s)	146
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	146
FspBI	CTAG	2 cut(s)	251, 422
GluI	GCNGC	1 cut(s)	146
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	2 cut(s)	58, 122
HgaI	GACGC	1 cut(s)	518
Hin1II	CATG	3 cut(s)	175, 393, 520
HincII	GTYRAC	2 cut(s)	177, 352
HindII	GTYRAC	2 cut(s)	177, 352
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	4 cut(s)	161, 367, 377, 703
HpaI	GTTAAC	2 cut(s)	177, 352
HphI	GGTGA	2 cut(s)	257, 712
Hpy166II	GTNNAC	3 cut(s)	177, 248, 352
Hpy188I	TCNGA	4 cut(s)	30, 339, 652, 708
Hpy188III	TCNNGA	6 cut(s)	62, 140, 158, 287, 371, 476
Hpy8I	GTNNAC	3 cut(s)	177, 248, 352
HpyAV	CCTTC	2 cut(s)	284, 703
HpyCH4III	ACNGT	2 cut(s)	127, 443
HpyCH4V	TGCA	4 cut(s)	13, 168, 235, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	399
HpyF3I	CTNAG	7 cut(s)	27, 81, 159, 281, 338, 630, 695
Hsp92II	CATG	3 cut(s)	175, 393, 520
KspAI	GTTAAC	2 cut(s)	177, 352
Kzo9I	GATC	3 cut(s)	22, 76, 256
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	1 cut(s)	157
MabI	ACCWGGT	1 cut(s)	409
MaeI	CTAG	2 cut(s)	251, 422
MaeIII	GTNAC	1 cut(s)	600
MalI	GATC	3 cut(s)	24, 78, 258
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	3 cut(s)	22, 76, 256
MboII	GAAGA	6 cut(s)	185, 376, 536, 587, 665, 671
MfeI	CAATTG	1 cut(s)	181
MflI	RGATCY	2 cut(s)	76, 256
MluCI	AATT	4 cut(s)	181, 456, 621, 639
MlyI	GAGTC	2 cut(s)	170, 361
MmeI	TCCRAC	1 cut(s)	284
MseI	TTAA	5 cut(s)	176, 210, 309, 351, 715
MspR9I	CCNGG	3 cut(s)	150, 404, 411
MunI	CAATTG	1 cut(s)	181
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	3 cut(s)	150, 404, 411
MwoI	GCNNNNNNNGC	1 cut(s)	399
NdeII	GATC	3 cut(s)	22, 76, 256
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	3 cut(s)	175, 393, 520
NlaIV	GGNNCC	3 cut(s)	78, 87, 408
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	377, 703
PflMI	CCANNNNNTGG	1 cut(s)	445
PkrI	GCNGC	1 cut(s)	147
PleI	GAGTC	2 cut(s)	169, 361
PpsI	GAGTC	2 cut(s)	169, 361
PsiI	TTATAA	1 cut(s)	263
Psp6I	CCWGG	3 cut(s)	148, 402, 409
PspGI	CCWGG	3 cut(s)	148, 402, 409
PspN4I	GGNNCC	3 cut(s)	78, 87, 408
PspPI	GGNCC	1 cut(s)	56
PsuI	RGATCY	2 cut(s)	76, 256
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SaqAI	TTAA	5 cut(s)	176, 210, 309, 351, 715
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	3 cut(s)	22, 76, 256
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	2 cut(s)	170, 361
ScrFI	CCNGG	3 cut(s)	150, 404, 411
SetI	ASST	7 cut(s)	87, 229, 304, 337, 412, 696, 714
SexAI	ACCWGGT	1 cut(s)	409
SpeI	ACTAGT	1 cut(s)	250
Sse9I	AATT	4 cut(s)	181, 456, 621, 639
SsiI	CCGC	1 cut(s)	535
SspMI	CTAG	2 cut(s)	251, 422
StyD4I	CCNGG	3 cut(s)	148, 402, 409
TaaI	ACNGT	2 cut(s)	127, 443
TaqI	TCGA	1 cut(s)	286
TaqII	GACCGA	1 cut(s)	577
TasI	AATT	4 cut(s)	181, 456, 621, 639
TfiI	GAWTC	2 cut(s)	377, 703
Tru1I	TTAA	5 cut(s)	176, 210, 309, 351, 715
Tru9I	TTAA	5 cut(s)	176, 210, 309, 351, 715
TscAI	CASTG	2 cut(s)	46, 247
TseI	GCWGC	1 cut(s)	145
TspDTI	ATGAA	3 cut(s)	82, 378, 588
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	46, 247
Van91I	CCANNNNNTGG	1 cut(s)	445
XagI	CCTNNNNNAGG	1 cut(s)	30
XspI	CTAG	2 cut(s)	251, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.