Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010420

Physical Location & Seq

Genomic Coordinates Forward (+)

6584925 .. 6586590

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGATTTGGGAATGTCGTCGATGCAAGTAAATGATCCTCAAAGAGGGTTCAGTGTGCTTGCTAATGGACCTCTTGACATGAGGATGGATCCTCAGGCAAGTCTGAAAGCTGAAGACGTTTTGAACTCTTGGCCAGATAATGAGGTAGGCCGCATCCTGCGAGACTATGGGGAAGAAAGCAACTGGTTCTCTCTTCAAAATACAATTGTTAGAGCCCGATCACAGGGTGGATTGCATACCACTGGCGATTTAGTAGATCTTATCAAAAGTGCAACTCCACTGAGTCGAGAAGGACGGCAAGGTTGGATTAAAACAGCAACAAGAGTGTTTCAAGCTCTGAGGATAGCCGTGAACGATGAACTGAAGACTCTGGAGGATTCTCTTTATGCTTCTTTTGACTGCCTTGCACCGGGTGGTAGGTTGGCAGTCATCTCTTTCCACAGTTTGGAGGACAGAATTGTGAAACAAACGTTTCTAGACATCATCAACGTCAAAGACAGAGATGTTGACGTTGACATGATTGAAGAAGCAGCGGGGAAGAAAGATTTGAGAAAGATCATGAGCGACATTGATGAAAACGAAGCATGGATCAAACAAACGGTACAGGGCTTGAGGGGAATAATTCTCACTAAGAGACCAATTACACCATCTGAAACGGAAGAGAGCCTCAACAGCCGAGCTAGAAGTGCCAAGCTTAGGGTGATTCAGAAGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_5

Protein Analysis

239

Amino Acids

26.68

Weight (kDa)

5.4

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10910
fragaria_vesca	FvH4_2g30630
malus_domestica	MD08G1133300.v1.1 MD15G1110800.v1.1
prunus_persica	Prupe.1G463000_v2.0.a1 Prupe.1G463000_v2.0.a1
pyrus_communis	pycom08g11220 pycom08g15000 pycom15g10120
rosa_chinensis	RchiOBHm_Chr6g0312281
rosa_laevigata	RLG00000010334 RLG00000010336
rosa_multiflora	Rmu_sc0020391.1_g000002 Rmu_ssc0000424.1_g000005 Rmu_ssc0000424.1_g000017
rosa_roxburghii	Rroxscaffold_7G00156870
rosa_rugosa	Rorug06G0394800
rosa_samantha	Rh6AG511700 Rh6CG528600 Rh6DG514500
rosa_wichuraiana	Rw6G044520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	445
AciI	CCGC	2 cut(s)	151, 533
AclI	AACGTT	1 cut(s)	470
AclWI	GGATC	4 cut(s)	29, 83, 96, 596
AcoI	YGGCCR	1 cut(s)	131
AcuI	CTGAAG	2 cut(s)	132, 383
AdeI	CACNNNGTG	2 cut(s)	227, 413
AfaI	GTAC	1 cut(s)	603
AfiI	CCNNNNNNNGG	5 cut(s)	44, 223, 409, 445, 696
AgsI	TTSAA	4 cut(s)	124, 197, 332, 524
AluBI	AGCT	5 cut(s)	110, 335, 680, 694, 712
AluI	AGCT	5 cut(s)	110, 335, 680, 694, 712
Alw26I	GTCTC	2 cut(s)	156, 628
AlwI	GGATC	4 cut(s)	29, 83, 96, 596
AoxI	GGCC	2 cut(s)	131, 148
ApeKI	GCWGC	1 cut(s)	530
AspS9I	GGNCC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	712
AvaII	GGWCC	1 cut(s)	68
AxyI	CCTNAGG	1 cut(s)	93
BalI	TGGCCA	1 cut(s)	133
BamHI	GGATCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	217
BbsI	GAAGAC	2 cut(s)	120, 371
BbvI	GCAGC	1 cut(s)	542
BccI	CCATC	2 cut(s)	79, 655
BceAI	ACGGC	2 cut(s)	311, 332
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	156, 628
BfaI	CTAG	2 cut(s)	476, 681
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	2 cut(s)	151, 531
BlsI	GCNGC	2 cut(s)	152, 532
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	12, 162
BpiI	GAAGAC	2 cut(s)	120, 371
BpmI	CTGGAG	1 cut(s)	392
Bpu10I	CCTNAGC	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	631
BpuMI	CCSGG	1 cut(s)	411
BsaI	GGTCTC	1 cut(s)	628
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 223, 409, 445, 696
Bse1I	ACTGG	2 cut(s)	188, 247
Bse21I	CCTNAGG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	90, 153
BseLI	CCNNNNNNNGG	5 cut(s)	44, 223, 409, 445, 696
BseMII	CTCAG	3 cut(s)	107, 272, 329
BseNI	ACTGG	2 cut(s)	188, 247
BseXI	GCAGC	1 cut(s)	542
BshFI	GGCC	2 cut(s)	133, 150
BsiSI	CCGG	1 cut(s)	410
BslI	CCNNNNNNNGG	5 cut(s)	44, 223, 409, 445, 696
BsmAI	GTCTC	2 cut(s)	156, 628
BsnI	GGCC	2 cut(s)	133, 150
Bso31I	GGTCTC	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	6 cut(s)	34, 88, 218, 256, 555, 588
BspACI	CCGC	2 cut(s)	151, 533
BspANI	GGCC	2 cut(s)	133, 150
BspCNI	CTCAG	3 cut(s)	106, 273, 330
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	4 cut(s)	29, 83, 96, 596
BspTNI	GGTCTC	1 cut(s)	628
BsrI	ACTGG	2 cut(s)	188, 247
BssMI	GATC	6 cut(s)	34, 88, 218, 256, 555, 588
Bst4CI	ACNGT	2 cut(s)	443, 601
Bst6I	CTCTTC	2 cut(s)	198, 654
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	5 cut(s)	93, 281, 338, 630, 695
BstENI	CCTNNNNNAGG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	90, 153
BstKTI	GATC	6 cut(s)	37, 91, 221, 259, 558, 591
BstMAI	GTCTC	2 cut(s)	156, 628
BstMBI	GATC	6 cut(s)	34, 88, 218, 256, 555, 588
BstMWI	GCNNNNNNNGC	2 cut(s)	672, 686
BstSCI	CCNGG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	542
BstV2I	GAAGAC	2 cut(s)	120, 371
BstX2I	RGATCY	2 cut(s)	88, 256
BstYI	RGATCY	2 cut(s)	88, 256
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	133, 150
BtsCI	GGATG	2 cut(s)	90, 153
BtsIMutI	CAGTG	3 cut(s)	58, 240, 278
Cac8I	GCNNGC	1 cut(s)	60
CciI	TCATGA	1 cut(s)	558
Cfr13I	GGNCC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	602
CviAII	CATG	4 cut(s)	79, 517, 559, 585
CviQI	GTAC	1 cut(s)	602
DdeI	CTNAG	5 cut(s)	93, 281, 338, 630, 695
DpnI	GATC	6 cut(s)	36, 90, 220, 258, 557, 590
DpnII	GATC	6 cut(s)	34, 88, 218, 256, 555, 588
DraIII	CACNNNGTG	2 cut(s)	227, 413
EaeI	YGGCCR	1 cut(s)	131
Eam1104I	CTCTTC	2 cut(s)	198, 654
EarI	CTCTTC	2 cut(s)	198, 654
Eco24I	GRGCYC	1 cut(s)	217
Eco31I	GGTCTC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	2 cut(s)	132, 383
Eco81I	CCTNAGG	1 cut(s)	93
EcoNI	CCTNNNNNAGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	217
FaeI	CATG	4 cut(s)	82, 520, 562, 588
FaiI	YATR	7 cut(s)	80, 168, 237, 387, 518, 560, 586
FatI	CATG	4 cut(s)	78, 516, 558, 584
FauI	CCCGC	1 cut(s)	526
Fnu4HI	GCNGC	2 cut(s)	151, 531
FokI	GGATG	2 cut(s)	97, 140
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	2 cut(s)	151, 531
FspBI	CTAG	2 cut(s)	476, 681
GluI	GCNGC	2 cut(s)	151, 531
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	2 cut(s)	133, 150
HapII	CCGG	1 cut(s)	410
Hin1II	CATG	4 cut(s)	82, 520, 562, 588
HincII	GTYRAC	2 cut(s)	508, 514
HindII	GTYRAC	2 cut(s)	508, 514
HindIII	AAGCTT	2 cut(s)	692, 710
HinfI	GANTC	4 cut(s)	283, 367, 377, 703
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	1 cut(s)	712
Hpy166II	GTNNAC	3 cut(s)	352, 508, 514
Hpy188I	TCNGA	4 cut(s)	105, 339, 652, 708
Hpy188III	TCNNGA	5 cut(s)	74, 287, 371, 476, 559
Hpy8I	GTNNAC	3 cut(s)	352, 508, 514
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	2 cut(s)	443, 601
HpyCH4IV	ACGT	4 cut(s)	117, 470, 489, 510
HpyCH4V	TGCA	4 cut(s)	25, 235, 272, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	672, 686
HpyF3I	CTNAG	5 cut(s)	93, 281, 338, 630, 695
HpySE526I	ACGT	4 cut(s)	117, 470, 489, 510
Hsp92II	CATG	4 cut(s)	82, 520, 562, 588
Kzo9I	GATC	6 cut(s)	34, 88, 218, 256, 555, 588
LpnPI	CCDG	9 cut(s)	80, 147, 169, 170, 209, 228, 356, 423, 590
Lsp1109I	GCAGC	1 cut(s)	542
LweI	GCATC	2 cut(s)	12, 162
MaeI	CTAG	2 cut(s)	476, 681
MaeII	ACGT	4 cut(s)	117, 470, 489, 510
MalI	GATC	6 cut(s)	36, 90, 220, 258, 557, 590
MboI	GATC	6 cut(s)	34, 88, 218, 256, 555, 588
MboII	GAAGA	7 cut(s)	125, 185, 185, 376, 536, 550, 671
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	2 cut(s)	88, 256
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	133
MluCI	AATT	4 cut(s)	204, 456, 621, 639
MluNI	TGGCCA	1 cut(s)	133
MlyI	GAGTC	2 cut(s)	292, 361
MmeI	TCCRAC	1 cut(s)	284
Mox20I	TGGCCA	1 cut(s)	133
MscI	TGGCCA	1 cut(s)	133
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	133
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	411
MunI	CAATTG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	672, 686
NciI	CCSGG	1 cut(s)	411
NdeII	GATC	6 cut(s)	34, 88, 218, 256, 555, 588
NlaIII	CATG	4 cut(s)	82, 520, 562, 588
NlaIV	GGNNCC	1 cut(s)	90
NmeAIII	GCCGAG	1 cut(s)	701
PagI	TCATGA	1 cut(s)	558
PfeI	GAWTC	2 cut(s)	377, 703
PflMI	CCANNNNNTGG	1 cut(s)	445
PkrI	GCNGC	2 cut(s)	152, 532
PleI	GAGTC	2 cut(s)	291, 361
PpsI	GAGTC	2 cut(s)	291, 361
Psp1406I	AACGTT	1 cut(s)	470
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	88, 256
RsaI	GTAC	1 cut(s)	603
RsaNI	GTAC	1 cut(s)	602
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	151, 531
Sau3AI	GATC	6 cut(s)	34, 88, 218, 256, 555, 588
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	2 cut(s)	292, 361
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	217
SfaNI	GCATC	2 cut(s)	12, 162
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	610
SmoI	CTYRAG	1 cut(s)	610
Sse9I	AATT	4 cut(s)	204, 456, 621, 639
SsiI	CCGC	2 cut(s)	151, 533
SspMI	CTAG	2 cut(s)	476, 681
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	443, 601
TaiI	ACGT	4 cut(s)	120, 473, 492, 513
TaqI	TCGA	2 cut(s)	20, 286
TasI	AATT	4 cut(s)	204, 456, 621, 639
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	377, 703
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	3 cut(s)	58, 247, 285
TseI	GCWGC	1 cut(s)	530
TspDTI	ATGAA	2 cut(s)	372, 588
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	3 cut(s)	58, 247, 285
Van91I	CCANNNNNTGG	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	68
XagI	CCTNNNNNAGG	1 cut(s)	42
XbaI	TCTAGA	1 cut(s)	475
XspI	CTAG	2 cut(s)	476, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.