Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020391.1

Orthogroup ID

OG0010420

Physical Location & Seq

Genomic Coordinates Reverse (-)

2513 .. 4036

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020391.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atggcaacagcagcttcactgtcaactccagcatcaagaatcttctctctctcttccttctcactccgcctccgaagcctcacatccgccgcccacagtctcagtcggagcaccaccaccacgactagtaagaagaagaagcagcggaatcagaagcacagagtcgccgtcaaagaaaagagaagaactcgctccgaccgagagttcgacatcaaccgttatggagactccgctttccacatcccagtcctgctcggcgaagtcatcgacgttttcccgccctccaaacctctccggcgtttcgtcgactgcaccgtcggagctgccggccactcttccgcgataattgaagggcaccctgaaatgcaagtgtatgtgggacttgatgttgatcctgtggcgctggagaaggctcgagctcggatcaattctgtgttgaacgacccaagttcgagcctgaaagcttatacatttttggagaattttagatacatcaagtctttgcttactgacgtggatgacacactccttgacaccggaattgatggcattttgatggatttaggaatgtcttcgatgcaggtgaatgatcctcagagaggcttcagtgtgcttgctaatgggcctcttgatatgcgcatggatcctcagacagcaacaagggtgtttcaagctctgaggatagcagtcaacgatgagttgaagactctggaggattctctttattcatgttttgactgcctggcacctggtggtaggctagcagtcatctctttccacagtttggaggacagaattgtgaaacaaacatttcttgacatcatcaacatcaaaggcggagatggggacgcttacatgattgaagaaagagagcggaagcaagatttgagaaagatcagaatagacattgatgaagacgaaatgtgggtcaaacaaatgttacagggcttgagaggaacaattctcactaagagaccaattacgccatctgaagaggaagagaaactgaacacccggtgtaggagtgccaagcttagggtgattcagaaggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_5

Protein Analysis

351

Amino Acids

39.42

Weight (kDa)

8.94

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10910
fragaria_vesca	FvH4_2g30630
malus_domestica	MD08G1133300.v1.1 MD15G1110800.v1.1
prunus_persica	Prupe.1G463000_v2.0.a1 Prupe.1G463000_v2.0.a1
pyrus_communis	pycom08g11220 pycom08g15000 pycom15g10120
rosa_chinensis	RchiOBHm_Chr6g0312281
rosa_laevigata	RLG00000010334 RLG00000010336
rosa_multiflora	Rmu_sc0020391.1_g000002 Rmu_ssc0000424.1_g000005 Rmu_ssc0000424.1_g000017
rosa_roxburghii	Rroxscaffold_7G00156870
rosa_rugosa	Rorug06G0394800
rosa_samantha	Rh6AG511700 Rh6CG528600 Rh6DG514500
rosa_wichuraiana	Rw6G044520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	571
AasI	GACNNNNNNGTC	1 cut(s)	314
Acc16I	TGCGCA	1 cut(s)	638
Acc36I	ACCTGC	1 cut(s)	571
AccB1I	GGYRCC	2 cut(s)	354, 745
AccB7I	CCANNNNNTGG	1 cut(s)	784
AccBSI	CCGCTC	1 cut(s)	874
AccI	GTMKAC	1 cut(s)	306
AccII	CGCG	1 cut(s)	341
AciI	CCGC	9 cut(s)	67, 87, 90, 145, 231, 278, 339, 837, 874
AclWI	GGATC	5 cut(s)	386, 431, 584, 638, 651
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	2 cut(s)	589, 1011
AdeI	CACNNNGTG	2 cut(s)	752, 1017
AfiI	CCNNNNNNNGG	4 cut(s)	599, 784, 1020, 1035
AgsI	TTSAA	5 cut(s)	350, 439, 671, 703, 863
AhlI	ACTAGT	1 cut(s)	125
AjiI	CACGTC	1 cut(s)	514
AjnI	CCWGG	2 cut(s)	741, 748
AluBI	AGCT	6 cut(s)	14, 323, 419, 464, 674, 1033
AluI	AGCT	6 cut(s)	14, 323, 419, 464, 674, 1033
Alw21I	GWGCWC	2 cut(s)	113, 421
Alw26I	GTCTC	3 cut(s)	104, 219, 967
AlwI	GGATC	5 cut(s)	386, 431, 584, 638, 651
Ama87I	CYCGRG	1 cut(s)	414
AoxI	GGCC	2 cut(s)	328, 623
ApeKI	GCWGC	3 cut(s)	11, 142, 323
ApoI	RAATTY	1 cut(s)	481
ArsI	GACNNNNNNTTYG	4 cut(s)	188, 220, 912, 944
Asp700I	GAANNNNTTC	1 cut(s)	571
AspLEI	GCGC	2 cut(s)	403, 639
AspS9I	GGNCC	1 cut(s)	623
AsuC2I	CCSGG	1 cut(s)	1015
AsuHPI	GGTGA	2 cut(s)	595, 1051
AsuNHI	GCTAGC	1 cut(s)	760
AvaI	CYCGRG	1 cut(s)	414
BaeGI	GKGCMC	1 cut(s)	357
BamHI	GGATCC	1 cut(s)	643
BanI	GGYRCC	2 cut(s)	354, 745
BanII	GRGCYC	1 cut(s)	421
BbsI	GAAGAC	3 cut(s)	564, 710, 921
Bbv12I	GWGCWC	2 cut(s)	113, 421
BbvI	GCAGC	3 cut(s)	23, 154, 310
BccI	CCATC	4 cut(s)	539, 550, 836, 994
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	2 cut(s)	743, 750
BcnI	CCSGG	1 cut(s)	1015
BcoDI	GTCTC	3 cut(s)	104, 219, 967
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	2 cut(s)	126, 761
BfoI	RGCGCY	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	571
BisI	GCNGC	4 cut(s)	12, 90, 143, 324
BlsI	GCNGC	4 cut(s)	13, 91, 144, 325
Bme1390I	CCNGG	3 cut(s)	743, 750, 1015
BmeT110I	CYCGRG	1 cut(s)	414
BmgBI	CACGTC	1 cut(s)	514
BmgT120I	GGNCC	1 cut(s)	623
BmiI	GGNNCC	3 cut(s)	356, 645, 747
BmrFI	CCNGG	3 cut(s)	743, 750, 1015
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	2 cut(s)	41, 567
BmtI	GCTAGC	1 cut(s)	764
BmuI	ACTGGG	1 cut(s)	239
BpiI	GAAGAC	3 cut(s)	564, 710, 921
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpmI	CTGGAG	3 cut(s)	12, 425, 731
Bpu10I	CCTNAGC	1 cut(s)	1034
BpuEI	CTTGAG	1 cut(s)	970
BpuMI	CCSGG	1 cut(s)	1015
BsaBI	GATNNNNATC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	967
BsaWI	WCCGGW	1 cut(s)	536
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	4 cut(s)	599, 784, 1020, 1035
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	245
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	2 cut(s)	743, 750
BseGI	GGATG	3 cut(s)	83, 240, 523
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	4 cut(s)	599, 784, 1020, 1035
BseMII	CTCAG	4 cut(s)	115, 608, 662, 668
BseNI	ACTGG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	3 cut(s)	23, 154, 310
BsgI	GTGCAG	1 cut(s)	295
Bsh1236I	CGCG	1 cut(s)	341
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	330, 625
BshNI	GGYRCC	2 cut(s)	354, 745
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	2 cut(s)	113, 421
BsiHKCI	CYCGRG	1 cut(s)	414
BsiSI	CCGG	4 cut(s)	295, 327, 537, 1015
BslFI	GGGAC	2 cut(s)	393, 860
BslI	CCNNNNNNNGG	4 cut(s)	599, 784, 1020, 1035
BsmAI	GTCTC	3 cut(s)	104, 219, 967
BsmFI	GGGAC	2 cut(s)	393, 860
BsnI	GGCC	2 cut(s)	330, 625
Bso31I	GGTCTC	1 cut(s)	967
BsoBI	CYCGRG	1 cut(s)	414
Bsp1286I	GDGCHC	3 cut(s)	113, 357, 421
Bsp143I	GATC	5 cut(s)	391, 423, 589, 643, 894
BspACI	CCGC	9 cut(s)	67, 87, 90, 145, 231, 278, 339, 837, 874
BspANI	GGCC	2 cut(s)	330, 625
BspCNI	CTCAG	4 cut(s)	114, 607, 661, 669
BspFNI	CGCG	1 cut(s)	341
BspLI	GGNNCC	3 cut(s)	356, 645, 747
BspMI	ACCTGC	1 cut(s)	571
BspOI	GCTAGC	1 cut(s)	764
BspPI	GGATC	5 cut(s)	386, 431, 584, 638, 651
BspT107I	GGYRCC	2 cut(s)	354, 745
BspTNI	GGTCTC	1 cut(s)	967
BsrBI	CCGCTC	1 cut(s)	874
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	326
BssMI	GATC	5 cut(s)	391, 423, 589, 643, 894
Bst2UI	CCWGG	2 cut(s)	743, 750
Bst4CI	ACNGT	5 cut(s)	21, 98, 218, 316, 782
Bst6I	CTCTTC	4 cut(s)	58, 340, 987, 993
BstC8I	GCNNGC	3 cut(s)	328, 615, 762
BstDEI	CTNAG	6 cut(s)	101, 594, 648, 677, 969, 1034
BstENI	CCTNNNNNAGG	1 cut(s)	597
BstF5I	GGATG	3 cut(s)	83, 240, 523
BstFNI	CGCG	1 cut(s)	341
BstH2I	RGCGCY	1 cut(s)	404
BstHHI	GCGC	2 cut(s)	403, 639
BstKTI	GATC	5 cut(s)	394, 426, 592, 646, 897
BstMAI	GTCTC	3 cut(s)	104, 219, 967
BstMBI	GATC	5 cut(s)	391, 423, 589, 643, 894
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 75
BstNI	CCWGG	2 cut(s)	743, 750
BstSCI	CCNGG	3 cut(s)	741, 748, 1013
BstSLI	GKGCMC	1 cut(s)	357
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	3 cut(s)	23, 154, 310
BstV2I	GAAGAC	3 cut(s)	564, 710, 921
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BsuRI	GGCC	2 cut(s)	330, 625
BtrI	CACGTC	1 cut(s)	514
BtsCI	GGATG	3 cut(s)	83, 240, 523
BtsIMutI	CAGTG	2 cut(s)	17, 613
BveI	ACCTGC	1 cut(s)	571
Cac8I	GCNNGC	3 cut(s)	328, 615, 762
CfoI	GCGC	2 cut(s)	403, 639
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	623
CseI	GACGC	1 cut(s)	857
CsiI	ACCWGGT	1 cut(s)	748
CviAII	CATG	3 cut(s)	640, 729, 856
DdeI	CTNAG	6 cut(s)	101, 594, 648, 677, 969, 1034
DpnI	GATC	5 cut(s)	393, 425, 591, 645, 896
DpnII	GATC	5 cut(s)	391, 423, 589, 643, 894
DraIII	CACNNNGTG	2 cut(s)	752, 1017
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	4 cut(s)	58, 340, 987, 993
EarI	CTCTTC	4 cut(s)	58, 340, 987, 993
EciI	GGCGGA	3 cut(s)	56, 76, 852
Ecl136II	GAGCTC	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	967
Eco53kI	GAGCTC	1 cut(s)	419
Eco57I	CTGAAG	2 cut(s)	589, 1011
Eco88I	CYCGRG	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	419
EcoNI	CCTNNNNNAGG	1 cut(s)	597
EcoRII	CCWGG	2 cut(s)	741, 748
EcoT38I	GRGCYC	1 cut(s)	421
FaeI	CATG	3 cut(s)	643, 732, 859
FaiI	YATR	7 cut(s)	222, 375, 468, 635, 641, 730, 857
FaqI	GGGAC	2 cut(s)	393, 860
FatI	CATG	3 cut(s)	639, 728, 855
FauI	CCCGC	1 cut(s)	285
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	4 cut(s)	12, 90, 143, 324
FokI	GGATG	3 cut(s)	70, 227, 530
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	4 cut(s)	12, 90, 143, 324
FspAI	RTGCGCAY	1 cut(s)	638
FspBI	CTAG	2 cut(s)	126, 761
FspI	TGCGCA	1 cut(s)	638
GlaI	GCGC	2 cut(s)	402, 638
GluI	GCNGC	4 cut(s)	12, 90, 143, 324
GsuI	CTGGAG	3 cut(s)	12, 425, 731
HaeII	RGCGCY	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	330, 625
HapII	CCGG	4 cut(s)	295, 327, 537, 1015
HgaI	GACGC	1 cut(s)	857
HhaI	GCGC	2 cut(s)	403, 639
Hin1II	CATG	3 cut(s)	643, 732, 859
Hin6I	GCGC	2 cut(s)	401, 637
HinP1I	GCGC	2 cut(s)	401, 637
HincII	GTYRAC	3 cut(s)	24, 307, 691
HindII	GTYRAC	3 cut(s)	24, 307, 691
HindIII	AAGCTT	2 cut(s)	462, 1031
HinfI	GANTC	7 cut(s)	39, 148, 162, 227, 706, 716, 1042
HpaII	CCGG	4 cut(s)	295, 327, 537, 1015
HphI	GGTGA	2 cut(s)	595, 1051
Hpy166II	GTNNAC	3 cut(s)	24, 307, 691
Hpy188III	TCNNGA	4 cut(s)	36, 629, 710, 815
Hpy8I	GTNNAC	3 cut(s)	24, 307, 691
Hpy99I	CGWCG	3 cut(s)	272, 308, 320
HpyAV	CCTTC	4 cut(s)	67, 344, 403, 1042
HpyCH4III	ACNGT	5 cut(s)	21, 98, 218, 316, 782
HpyCH4IV	ACGT	2 cut(s)	270, 513
HpyCH4V	TGCA	3 cut(s)	312, 367, 580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 75
HpyF3I	CTNAG	6 cut(s)	101, 594, 648, 677, 969, 1034
HpySE526I	ACGT	2 cut(s)	270, 513
Hsp92II	CATG	3 cut(s)	643, 732, 859
HspAI	GCGC	2 cut(s)	401, 637
KroI	GCCGGC	1 cut(s)	326
KroNI	GCCGGC	1 cut(s)	328
Kzo9I	GATC	5 cut(s)	391, 423, 589, 643, 894
LmnI	GCTCC	3 cut(s)	108, 197, 320
Lsp1109I	GCAGC	3 cut(s)	23, 154, 310
LweI	GCATC	2 cut(s)	41, 567
MabI	ACCWGGT	1 cut(s)	748
MaeI	CTAG	2 cut(s)	126, 761
MaeII	ACGT	2 cut(s)	270, 513
MaeIII	GTNAC	1 cut(s)	939
MalI	GATC	5 cut(s)	393, 425, 591, 645, 896
MbiI	CCGCTC	1 cut(s)	874
MboI	GATC	5 cut(s)	391, 423, 589, 643, 894
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	3 cut(s)	113, 357, 421
MluCI	AATT	7 cut(s)	345, 427, 481, 540, 795, 960, 978
MlyI	GAGTC	3 cut(s)	171, 221, 700
MmeI	TCCRAC	3 cut(s)	86, 219, 298
MroNI	GCCGGC	1 cut(s)	326
MroXI	GAANNNNTTC	1 cut(s)	571
MseI	TTAA	1 cut(s)	1054
MslI	CAYNNNNRTG	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	4 cut(s)	295, 327, 537, 1015
MspR9I	CCNGG	3 cut(s)	743, 750, 1015
MvaI	CCWGG	2 cut(s)	743, 750
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	2 cut(s)	11, 75
NaeI	GCCGGC	1 cut(s)	328
NciI	CCSGG	1 cut(s)	1015
NdeII	GATC	5 cut(s)	391, 423, 589, 643, 894
NgoMIV	GCCGGC	1 cut(s)	326
NheI	GCTAGC	1 cut(s)	760
NlaIII	CATG	3 cut(s)	643, 732, 859
NlaIV	GGNNCC	3 cut(s)	356, 645, 747
NmeAIII	GCCGAG	1 cut(s)	234
NsbI	TGCGCA	1 cut(s)	638
PaeR7I	CTCGAG	1 cut(s)	414
PaqCI	CACCTGC	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	2 cut(s)	196, 312
PdiI	GCCGGC	1 cut(s)	328
PdmI	GAANNNNTTC	1 cut(s)	571
PfeI	GAWTC	4 cut(s)	39, 148, 716, 1042
PflMI	CCANNNNNTGG	1 cut(s)	784
PkrI	GCNGC	4 cut(s)	13, 91, 144, 325
PleI	GAGTC	3 cut(s)	170, 221, 700
PpsI	GAGTC	3 cut(s)	170, 221, 700
Psp124BI	GAGCTC	1 cut(s)	421
Psp6I	CCWGG	2 cut(s)	741, 748
PspGI	CCWGG	2 cut(s)	741, 748
PspN4I	GGNNCC	3 cut(s)	356, 645, 747
PspPI	GGNCC	1 cut(s)	623
PspXI	VCTCGAGB	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	643
RseI	CAYNNNNRTG	1 cut(s)	554
SacI	GAGCTC	1 cut(s)	421
SalI	GTCGAC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	1054
SatI	GCNGC	4 cut(s)	12, 90, 143, 324
Sau3AI	GATC	5 cut(s)	391, 423, 589, 643, 894
Sau96I	GGNCC	1 cut(s)	623
SchI	GAGTC	3 cut(s)	171, 221, 700
ScrFI	CCNGG	3 cut(s)	743, 750, 1015
SduI	GDGCHC	3 cut(s)	113, 357, 421
SexAI	ACCWGGT	1 cut(s)	748
SfaNI	GCATC	2 cut(s)	41, 567
Sfr274I	CTCGAG	1 cut(s)	414
SlaI	CTCGAG	1 cut(s)	414
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	2 cut(s)	414, 949
SmoI	CTYRAG	2 cut(s)	414, 949
SpeI	ACTAGT	1 cut(s)	125
Sse9I	AATT	7 cut(s)	345, 427, 481, 540, 795, 960, 978
SsiI	CCGC	9 cut(s)	67, 87, 90, 145, 231, 278, 339, 837, 874
SspMI	CTAG	2 cut(s)	126, 761
SstI	GAGCTC	1 cut(s)	421
StyD4I	CCNGG	3 cut(s)	741, 748, 1013
TaaI	ACNGT	5 cut(s)	21, 98, 218, 316, 782
TaiI	ACGT	2 cut(s)	273, 516
TaqI	TCGA	6 cut(s)	207, 267, 306, 415, 452, 575
TaqII	GACCGA	1 cut(s)	213
TasI	AATT	7 cut(s)	345, 427, 481, 540, 795, 960, 978
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	4 cut(s)	39, 148, 716, 1042
Tru1I	TTAA	1 cut(s)	1054
Tru9I	TTAA	1 cut(s)	1054
TscAI	CASTG	2 cut(s)	24, 613
TseI	GCWGC	3 cut(s)	11, 142, 323
TspDTI	ATGAA	2 cut(s)	717, 927
TspRI	CASTG	2 cut(s)	24, 613
Van91I	CCANNNNNTGG	1 cut(s)	784
XagI	CCTNNNNNAGG	1 cut(s)	597
XapI	RAATTY	1 cut(s)	481
XhoI	CTCGAG	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	571
XspI	CTAG	2 cut(s)	126, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.