Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010420

Physical Location & Seq

Genomic Coordinates Reverse (-)

9532692 .. 9534288

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g11220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGATCCATCAAAGAGGGTTCAGTGTGCTTGCTAATGGACCTCTTGATATGAGGATGGATCCTCAGGCAAGTCTGAAAGCTGAAGACATTTTGAACTCTTGGCCAGATAATGAGGTAGGGCGCATCCTGCGGGACTATGGGGAAGAAAGTAACTGGTACTCTCTTCAAAATAGAATTGTTAGAGCCCGTTCACAGGGTGGATTGCATACCACTGGTGATTTAGTAGATCTTATAAAGAGTGCAACTCCGCTGAGTCGAGAAGGACGGCAAGGTTGGATTAAGACAGCTACAAGGGTGTTTCAAGCTCTGAGGATAGCCGTGAACGATGAACTGAAGACTCCCGAGGATTCTCTTTATTCTTCTTTTGACTGCCTTGCACCTGGTGGCAGGTTGGCAGTCATCTCTTTCCATAGTTTGGAGGACAGAATTGTGAAACAAACATTTCTGGACATCATCAACATCAAAGACAGAGATGGTGACGTTGACATGAATGAAGAAGAACCACGGAAGAAAGATTTGAGAAAGATCATGAGTGACATTGATGAGAACGAGGCATGGATCAAACAAACGGTACAAGGCTTAAGAGGCATAATTCTCACTAAGAGACCAATTACACCGTCTGAAGCGGAAGAGTGCCTGAACAGCCGGGCTAGAAGTGCCAAGCTCAGGGTGCTTCAGAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_5

Protein Analysis

229

Amino Acids

25.89

Weight (kDa)

6.35

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10910
fragaria_vesca	FvH4_2g30630
malus_domestica	MD08G1133300.v1.1 MD15G1110800.v1.1
prunus_persica	Prupe.1G463000_v2.0.a1 Prupe.1G463000_v2.0.a1
pyrus_communis	pycom08g11220 pycom08g15000 pycom15g10120
rosa_chinensis	RchiOBHm_Chr6g0312281
rosa_laevigata	RLG00000010334 RLG00000010336
rosa_multiflora	Rmu_sc0020391.1_g000002 Rmu_ssc0000424.1_g000005 Rmu_ssc0000424.1_g000017
rosa_roxburghii	Rroxscaffold_7G00156870
rosa_rugosa	Rorug06G0394800
rosa_samantha	Rh6AG511700 Rh6CG528600 Rh6DG514500
rosa_wichuraiana	Rw6G044520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	378
AccB7I	CCANNNNNTGG	1 cut(s)	415
AciI	CCGC	3 cut(s)	130, 248, 626
AclWI	GGATC	3 cut(s)	53, 66, 566
AcoI	YGGCCR	1 cut(s)	101
AcuI	CTGAAG	4 cut(s)	102, 353, 642, 659
AdeI	CACNNNGTG	2 cut(s)	197, 383
AfaI	GTAC	2 cut(s)	158, 573
AfiI	CCNNNNNNNGG	3 cut(s)	193, 415, 666
AflII	CTTAAG	1 cut(s)	580
AgsI	TTSAA	3 cut(s)	94, 167, 302
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	5 cut(s)	80, 287, 305, 664, 682
AluI	AGCT	5 cut(s)	80, 287, 305, 664, 682
Alw26I	GTCTC	1 cut(s)	598
AlwI	GGATC	3 cut(s)	53, 66, 566
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	647
AsuHPI	GGTGA	2 cut(s)	227, 488
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	38
AxyI	CCTNAGG	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	103
BamHI	GGATCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	187
BbsI	GAAGAC	2 cut(s)	90, 341
BccI	CCATC	3 cut(s)	15, 49, 467
BceAI	ACGGC	2 cut(s)	281, 302
BciT130I	CCWGG	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	647
BcoDI	GTCTC	1 cut(s)	598
BfaI	CTAG	1 cut(s)	651
BfrI	CTTAAG	1 cut(s)	580
BfuAI	ACCTGC	1 cut(s)	378
BglII	AGATCT	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	381, 647
Bme18I	GGWCC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	2 cut(s)	381, 647
BmsI	GCATC	1 cut(s)	132
BpiI	GAAGAC	2 cut(s)	90, 341
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
Bpu10I	CCTNAGC	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	647
BsaI	GGTCTC	1 cut(s)	598
BsaJI	CCNNGG	2 cut(s)	342, 503
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 415, 666
Bse1I	ACTGG	2 cut(s)	158, 217
Bse21I	CCTNAGG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	342, 503
BseGI	GGATG	2 cut(s)	60, 123
BseLI	CCNNNNNNNGG	3 cut(s)	193, 415, 666
BseMII	CTCAG	4 cut(s)	77, 242, 299, 679
BseNI	ACTGG	2 cut(s)	158, 217
BshFI	GGCC	1 cut(s)	103
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	1 cut(s)	646
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	3 cut(s)	193, 415, 666
BsmAI	GTCTC	1 cut(s)	598
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	103
Bso31I	GGTCTC	1 cut(s)	598
BsoBI	CYCGRG	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	5 cut(s)	3, 58, 226, 525, 558
BspACI	CCGC	3 cut(s)	130, 248, 626
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	4 cut(s)	76, 243, 300, 678
BspHI	TCATGA	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	378
BspPI	GGATC	3 cut(s)	53, 66, 566
BspTI	CTTAAG	1 cut(s)	580
BspTNI	GGTCTC	1 cut(s)	598
BsrI	ACTGG	2 cut(s)	158, 217
BssECI	CCNNGG	2 cut(s)	342, 503
BssMI	GATC	5 cut(s)	3, 58, 226, 525, 558
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	571, 618
Bst6I	CTCTTC	2 cut(s)	168, 624
BstAFI	CTTAAG	1 cut(s)	580
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	5 cut(s)	63, 251, 308, 600, 665
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	60, 123
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	5 cut(s)	6, 61, 229, 528, 561
BstMAI	GTCTC	1 cut(s)	598
BstMBI	GATC	5 cut(s)	3, 58, 226, 525, 558
BstMWI	GCNNNNNNNGC	6 cut(s)	127, 585, 642, 656, 670, 679
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	2 cut(s)	379, 645
BstV2I	GAAGAC	2 cut(s)	90, 341
BstX2I	RGATCY	2 cut(s)	58, 226
BstYI	RGATCY	2 cut(s)	58, 226
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	2 cut(s)	60, 123
BtsIMutI	CAGTG	2 cut(s)	28, 210
BveI	ACCTGC	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	30
CciI	TCATGA	1 cut(s)	528
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	38
CsiI	ACCWGGT	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	157, 572
CviAII	CATG	3 cut(s)	487, 529, 555
CviQI	GTAC	2 cut(s)	157, 572
DdeI	CTNAG	5 cut(s)	63, 251, 308, 600, 665
DpnI	GATC	5 cut(s)	5, 60, 228, 527, 560
DpnII	GATC	5 cut(s)	3, 58, 226, 525, 558
DraIII	CACNNNGTG	2 cut(s)	197, 383
EaeI	YGGCCR	1 cut(s)	101
Eam1104I	CTCTTC	2 cut(s)	168, 624
EarI	CTCTTC	2 cut(s)	168, 624
Eco24I	GRGCYC	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	598
Eco47I	GGWCC	1 cut(s)	38
Eco57I	CTGAAG	4 cut(s)	102, 353, 642, 659
Eco81I	CCTNAGG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	187
FaeI	CATG	3 cut(s)	490, 532, 558
FaiI	YATR	9 cut(s)	50, 138, 207, 233, 411, 488, 530, 556, 590
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	3 cut(s)	486, 528, 554
FauI	CCCGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	67, 110
FriOI	GRGCYC	1 cut(s)	187
FspBI	CTAG	1 cut(s)	651
GlaI	GCGC	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	1 cut(s)	646
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	490, 532, 558
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	3 cut(s)	253, 337, 347
HpaII	CCGG	1 cut(s)	646
HphI	GGTGA	2 cut(s)	227, 488
Hpy166II	GTNNAC	3 cut(s)	191, 322, 484
Hpy188I	TCNGA	4 cut(s)	75, 309, 622, 678
Hpy188III	TCNNGA	5 cut(s)	44, 257, 341, 446, 529
Hpy8I	GTNNAC	3 cut(s)	191, 322, 484
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	2 cut(s)	571, 618
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	3 cut(s)	205, 242, 377
HpyF10VI	GCNNNNNNNGC	6 cut(s)	127, 585, 642, 656, 670, 679
HpyF3I	CTNAG	5 cut(s)	63, 251, 308, 600, 665
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	3 cut(s)	490, 532, 558
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	3, 58, 226, 525, 558
LweI	GCATC	1 cut(s)	132
MabI	ACCWGGT	1 cut(s)	379
MaeI	CTAG	1 cut(s)	651
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	3 cut(s)	149, 476, 533
MalI	GATC	5 cut(s)	5, 60, 228, 527, 560
MboI	GATC	5 cut(s)	3, 58, 226, 525, 558
MboII	GAAGA	9 cut(s)	95, 155, 155, 346, 351, 506, 509, 520, 641
MflI	RGATCY	2 cut(s)	58, 226
MhlI	GDGCHC	1 cut(s)	187
MlsI	TGGCCA	1 cut(s)	103
MluCI	AATT	4 cut(s)	174, 426, 591, 609
MluNI	TGGCCA	1 cut(s)	103
MlyI	GAGTC	2 cut(s)	262, 331
MmeI	TCCRAC	1 cut(s)	254
Mox20I	TGGCCA	1 cut(s)	103
MscI	TGGCCA	1 cut(s)	103
MseI	TTAA	3 cut(s)	279, 581, 685
Msp20I	TGGCCA	1 cut(s)	103
MspA1I	CMGCKG	1 cut(s)	250
MspCI	CTTAAG	1 cut(s)	580
MspI	CCGG	1 cut(s)	646
MspR9I	CCNGG	2 cut(s)	381, 647
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	6 cut(s)	127, 585, 642, 656, 670, 679
NciI	CCSGG	1 cut(s)	647
NdeII	GATC	5 cut(s)	3, 58, 226, 525, 558
NlaIII	CATG	3 cut(s)	490, 532, 558
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	2 cut(s)	476, 533
PagI	TCATGA	1 cut(s)	528
PfeI	GAWTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	415
PleI	GAGTC	2 cut(s)	261, 331
PpsI	GAGTC	2 cut(s)	261, 331
PsiI	TTATAA	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	2 cut(s)	58, 226
RsaI	GTAC	2 cut(s)	158, 573
RsaNI	GTAC	2 cut(s)	157, 572
SaqAI	TTAA	3 cut(s)	279, 581, 685
Sau3AI	GATC	5 cut(s)	3, 58, 226, 525, 558
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	2 cut(s)	262, 331
ScrFI	CCNGG	2 cut(s)	381, 647
SduI	GDGCHC	1 cut(s)	187
SexAI	ACCWGGT	1 cut(s)	379
SfaNI	GCATC	1 cut(s)	132
SinI	GGWCC	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	580
SmoI	CTYRAG	1 cut(s)	580
Sse9I	AATT	4 cut(s)	174, 426, 591, 609
SsiI	CCGC	3 cut(s)	130, 248, 626
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	2 cut(s)	379, 645
TaaI	ACNGT	2 cut(s)	571, 618
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	1 cut(s)	256
TasI	AATT	4 cut(s)	174, 426, 591, 609
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	3 cut(s)	279, 581, 685
Tru9I	TTAA	3 cut(s)	279, 581, 685
TscAI	CASTG	2 cut(s)	28, 217
TseFI	GTSAC	2 cut(s)	476, 533
Tsp45I	GTSAC	2 cut(s)	476, 533
TspDTI	ATGAA	3 cut(s)	342, 503, 507
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	2 cut(s)	28, 217
Van91I	CCANNNNNTGG	1 cut(s)	415
Vha464I	CTTAAG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	38
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.