Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009777

Physical Location & Seq

Genomic Coordinates Forward (+)

40220196 .. 40223281

Gene Structure 3086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G481900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTCTTATAGCACGCTGAGAATTGACGACGACGATTTTGTCCCTGTTAGGCCTTCCTCCGTCGAACGCCCTCGCCGCTCTAATTCGTTGCCCTTTGTCCCGTTGCTGCTCATTGATGGCTTCTCTCGCAAGAGCTTCTCATATTCTGCCCTTCCCCAGGAGCCTCTCAGACTCTCCGTTCTCAAATTGGACGGCTCTTGTTTCGATATTGAAGTTGCCAAGACAGCCACTGTTTTAGAACTGAAGCAGGCGGTTGAGGCCGTTTTTAGTCACATGCCACAGAAGGGACCAGGAAAAATTTCATGGCCACACGTGTGGGGGCATTTCTGCTTGTGCTATGGTGCTCAGAAGCTAGTTGTTGAAACTGATCATATCAGACATTATGGCATCAAAGATGGTGATCAGCTTCATTTTGTCCGGCATGTTTCAATCAGCTACACCCTGACAAAGAAGCAATCAAAGAAAGGGCTCATTGGTTCGAAACAAAACACGACGTCAATACCACGATCAATTAGTCTTGAAGAGATAGAAGCGATTGACAAAGAGGAAGAGCAGAGTGACAGAGACATCGAACAGCATGACGAGGTATTTTATGATTCTGATGACATCGAGAATCCAAAGTCCAGGCATTGTAATGGTGAAGTTTCTATCGAACACAATGAGAGCACACTGCCTAGCTTGTTGGGAGAGTGGTTTCCATACTCCAGGCTGTCAGCTGTAGGAACCACATCCAAAAGAAGTTTAGCGTGTGCCCCAAGCATTGCCACTGGGTTGCTGGTTGGGTTTAGGAAGATGTTTGGGCTTTGTTTTGAAAAACGCGATAAACGCTATAGTCGAAGGGATACTTGGAGAATAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_B ubiquitin

Protein Analysis

287

Amino Acids

32.52

Weight (kDa)

6.8

Isoelectric Point (pI)

63.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32270 AT5G25340
fragaria_vesca	FvH4_2g28951
malus_domestica	MD08G1155200.v1.1 MD15G1126000.v1.1
prunus_persica	Prupe.1G481900_v2.0.a1
pyrus_communis	pycom08g12770 pycom15g11380
rosa_chinensis	RchiOBHm_Chr6g0297801
rosa_laevigata	RLG00000011561
rosa_multiflora	Rmu_sc0002674.1_g000017 Rmu_sc0003137.1_g000001 Rmu_sc0021574.1_g000002
rosa_roxburghii	Rroxscaffold_7G00170190 Rroxscaffold_7G00179040
rosa_rugosa	Rorug06G0275500
rosa_samantha	Rh6AG386200 Rh6BG394800 Rh6CG400500 Rh6DG386900
rosa_wichuraiana	Rw6G033660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AatII	GACGTC	1 cut(s)	497
AccBSI	CCGCTC	1 cut(s)	78
AccII	CGCG	1 cut(s)	819
AciI	CCGC	2 cut(s)	76, 251
AcoI	YGGCCR	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	263
AcvI	CACGTG	1 cut(s)	313
AcyI	GRCGYC	1 cut(s)	494
AfiI	CCNNNNNNNGG	2 cut(s)	157, 284
AflIII	ACRYGT	2 cut(s)	310, 312
AgsI	TTSAA	5 cut(s)	212, 362, 429, 521, 812
AjnI	CCWGG	4 cut(s)	156, 289, 623, 704
AjuI	GAANNNNNNNTTGG	2 cut(s)	829, 861
AleI	CACNNNNGTG	1 cut(s)	313
AluBI	AGCT	6 cut(s)	135, 352, 406, 435, 678, 716
AluI	AGCT	6 cut(s)	135, 352, 406, 435, 678, 716
Alw21I	GWGCWC	2 cut(s)	346, 668
Alw26I	GTCTC	1 cut(s)	558
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	3 cut(s)	50, 258, 305
ApeKI	GCWGC	1 cut(s)	106
ApoI	RAATTY	1 cut(s)	297
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
Asp700I	GAANNNNTTC	1 cut(s)	298
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	410, 650
AsuII	TTCGAA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	754
BalI	TGGCCA	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	471
BbrPI	CACGTG	1 cut(s)	313
Bbv12I	GWGCWC	2 cut(s)	346, 668
BbvI	GCAGC	1 cut(s)	93
BccI	CCATC	2 cut(s)	110, 389
BceAI	ACGGC	2 cut(s)	208, 245
BciT130I	CCWGG	4 cut(s)	158, 291, 625, 706
BciVI	GTATCC	1 cut(s)	835
BclI	TGATCA	2 cut(s)	367, 400
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	2 cut(s)	353, 675
BfmI	CTRYAG	2 cut(s)	717, 829
BfuI	GTATCC	1 cut(s)	835
BisI	GCNGC	2 cut(s)	76, 107
BlsI	GCNGC	2 cut(s)	77, 108
Bme1390I	CCNGG	4 cut(s)	158, 291, 625, 706
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	3 cut(s)	162, 288, 724
BmrFI	CCNGG	4 cut(s)	158, 291, 625, 706
BmrI	ACTGGG	1 cut(s)	777
BmsI	GCATC	1 cut(s)	396
BmuI	ACTGGG	1 cut(s)	777
BpmI	CTGGAG	1 cut(s)	688
Bpu14I	TTCGAA	1 cut(s)	479
BsaAI	YACGTR	1 cut(s)	313
BsaBI	GATNNNNATC	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 284
Bse1I	ACTGG	1 cut(s)	772
Bse3DI	GCAATG	1 cut(s)	759
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	4 cut(s)	158, 291, 625, 706
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	728
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	157, 284
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	3 cut(s)	8, 181, 359
BseNI	ACTGG	1 cut(s)	772
BseSI	GKGCMC	1 cut(s)	754
BseXI	GCAGC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	819
BshFI	GGCC	3 cut(s)	52, 260, 307
BsiHKAI	GWGCWC	2 cut(s)	346, 668
BsiSI	CCGG	1 cut(s)	418
BslFI	GGGAC	3 cut(s)	26, 83, 300
BslI	CCNNNNNNNGG	2 cut(s)	157, 284
BsmAI	GTCTC	1 cut(s)	558
BsmFI	GGGAC	3 cut(s)	26, 83, 300
BsnI	GGCC	3 cut(s)	52, 260, 307
Bsp119I	TTCGAA	1 cut(s)	479
Bsp1286I	GDGCHC	4 cut(s)	346, 471, 668, 754
Bsp143I	GATC	3 cut(s)	367, 400, 506
BspACI	CCGC	2 cut(s)	76, 251
BspANI	GGCC	3 cut(s)	52, 260, 307
BspCNI	CTCAG	3 cut(s)	9, 180, 358
BspFNI	CGCG	1 cut(s)	819
BspLI	GGNNCC	3 cut(s)	162, 288, 724
BspQI	GCTCTTC	1 cut(s)	543
BspT104I	TTCGAA	1 cut(s)	479
BsrBI	CCGCTC	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	759
BsrI	ACTGG	1 cut(s)	772
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	3 cut(s)	367, 400, 506
BssNI	GRCGYC	1 cut(s)	494
Bst2UI	CCWGG	4 cut(s)	158, 291, 625, 706
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	2 cut(s)	516, 543
BstACI	GRCGYC	1 cut(s)	494
BstBAI	YACGTR	1 cut(s)	313
BstBI	TTCGAA	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	14, 249
BstDEI	CTNAG	3 cut(s)	17, 167, 345
BstENI	CCTNNNNNAGG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	728
BstFNI	CGCG	1 cut(s)	819
BstKTI	GATC	3 cut(s)	370, 403, 509
BstMAI	GTCTC	1 cut(s)	558
BstMBI	GATC	3 cut(s)	367, 400, 506
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 126, 224, 257, 825
BstNI	CCWGG	4 cut(s)	158, 291, 625, 706
BstNSI	RCATGY	2 cut(s)	277, 425
BstSCI	CCNGG	4 cut(s)	156, 289, 623, 704
BstSFI	CTRYAG	2 cut(s)	717, 829
BstSLI	GKGCMC	1 cut(s)	754
BstUI	CGCG	1 cut(s)	819
BstV1I	GCAGC	1 cut(s)	93
BstXI	CCANNNNNNTGG	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	835
BsuRI	GGCC	3 cut(s)	52, 260, 307
BtsCI	GGATG	1 cut(s)	728
BtsI	GCAGTG	1 cut(s)	668
BtsIMutI	CAGTG	3 cut(s)	228, 668, 765
Cac8I	GCNNGC	2 cut(s)	14, 249
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	287
CviAII	CATG	4 cut(s)	274, 303, 422, 578
DdeI	CTNAG	3 cut(s)	17, 167, 345
DpnI	GATC	3 cut(s)	369, 402, 508
DpnII	GATC	3 cut(s)	367, 400, 506
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
EaeI	YGGCCR	1 cut(s)	305
Eam1104I	CTCTTC	2 cut(s)	516, 543
EarI	CTCTTC	2 cut(s)	516, 543
Eco147I	AGGCCT	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	263
Eco72I	CACGTG	1 cut(s)	313
EcoNI	CCTNNNNNAGG	1 cut(s)	155
EcoRII	CCWGG	4 cut(s)	156, 289, 623, 704
EcoT38I	GRGCYC	1 cut(s)	471
FaeI	CATG	4 cut(s)	277, 306, 425, 581
FalI	AAGNNNNNCTT	2 cut(s)	829, 861
FaqI	GGGAC	3 cut(s)	26, 83, 300
FatI	CATG	4 cut(s)	273, 302, 421, 577
FbaI	TGATCA	2 cut(s)	367, 400
Fnu4HI	GCNGC	2 cut(s)	76, 107
FokI	GGATG	1 cut(s)	715
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	2 cut(s)	76, 107
FspBI	CTAG	2 cut(s)	353, 675
GluI	GCNGC	2 cut(s)	76, 107
GsuI	CTGGAG	1 cut(s)	688
HaeIII	GGCC	3 cut(s)	52, 260, 307
HapII	CCGG	1 cut(s)	418
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	4 cut(s)	277, 306, 425, 581
HinfI	GANTC	3 cut(s)	171, 596, 613
HpaII	CCGG	1 cut(s)	418
HphI	GGTGA	2 cut(s)	410, 650
Hpy188I	TCNGA	4 cut(s)	170, 348, 377, 601
Hpy188III	TCNNGA	2 cut(s)	518, 610
Hpy99I	CGWCG	4 cut(s)	32, 35, 65, 496
HpyAV	CCTTC	4 cut(s)	63, 161, 277, 831
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	2 cut(s)	312, 494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 126, 224, 257, 825
HpyF3I	CTNAG	3 cut(s)	17, 167, 345
HpySE526I	ACGT	2 cut(s)	312, 494
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	4 cut(s)	277, 306, 425, 581
Ksp22I	TGATCA	2 cut(s)	367, 400
Kzo9I	GATC	3 cut(s)	367, 400, 506
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	1 cut(s)	93
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	2 cut(s)	353, 675
MaeII	ACGT	2 cut(s)	312, 494
MaeIII	GTNAC	2 cut(s)	269, 557
MalI	GATC	3 cut(s)	369, 402, 508
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	3 cut(s)	367, 400, 506
MboII	GAAGA	3 cut(s)	533, 560, 802
MhlI	GDGCHC	4 cut(s)	346, 471, 668, 754
MlsI	TGGCCA	1 cut(s)	307
MluCI	AATT	5 cut(s)	21, 82, 185, 297, 510
MluNI	TGGCCA	1 cut(s)	307
MlyI	GAGTC	1 cut(s)	165
MnlI	CCTC	6 cut(s)	67, 81, 174, 250, 538, 577
Mox20I	TGGCCA	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	298
MscI	TGGCCA	1 cut(s)	307
MslI	CAYNNNNRTG	2 cut(s)	313, 633
Msp20I	TGGCCA	1 cut(s)	307
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	1 cut(s)	418
MspR9I	CCNGG	4 cut(s)	158, 291, 625, 706
MvaI	CCWGG	4 cut(s)	158, 291, 625, 706
MvnI	CGCG	1 cut(s)	819
MwoI	GCNNNNNNNGC	5 cut(s)	75, 126, 224, 257, 825
NdeII	GATC	3 cut(s)	367, 400, 506
NlaIII	CATG	4 cut(s)	277, 306, 425, 581
NlaIV	GGNNCC	3 cut(s)	162, 288, 724
NmuCI	GTSAC	2 cut(s)	269, 557
NspI	RCATGY	2 cut(s)	277, 425
NspV	TTCGAA	1 cut(s)	479
OliI	CACNNNNGTG	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	832
PdmI	GAANNNNTTC	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	596, 613
PkrI	GCNGC	2 cut(s)	77, 108
PleI	GAGTC	1 cut(s)	165
PmaCI	CACGTG	1 cut(s)	313
PmlI	CACGTG	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	165
Ppu21I	YACGTR	1 cut(s)	313
Psp6I	CCWGG	4 cut(s)	156, 289, 623, 704
PspCI	CACGTG	1 cut(s)	313
PspGI	CCWGG	4 cut(s)	156, 289, 623, 704
PspN4I	GGNNCC	3 cut(s)	162, 288, 724
PspPI	GGNCC	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	716
RseI	CAYNNNNRTG	2 cut(s)	313, 633
SapI	GCTCTTC	1 cut(s)	543
SatI	GCNGC	2 cut(s)	76, 107
Sau3AI	GATC	3 cut(s)	367, 400, 506
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	4 cut(s)	158, 291, 625, 706
SduI	GDGCHC	4 cut(s)	346, 471, 668, 754
SetI	ASST	9 cut(s)	137, 315, 354, 408, 437, 497, 588, 680, 718
SfaNI	GCATC	1 cut(s)	396
SfcI	CTRYAG	2 cut(s)	717, 829
SfuI	TTCGAA	1 cut(s)	479
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	2 cut(s)	313, 633
Sse9I	AATT	5 cut(s)	21, 82, 185, 297, 510
SseBI	AGGCCT	1 cut(s)	52
SsiI	CCGC	2 cut(s)	76, 251
SspMI	CTAG	2 cut(s)	353, 675
StuI	AGGCCT	1 cut(s)	52
StyD4I	CCNGG	4 cut(s)	156, 289, 623, 704
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	2 cut(s)	315, 497
TaqI	TCGA	7 cut(s)	63, 204, 479, 570, 609, 651, 835
TasI	AATT	5 cut(s)	21, 82, 185, 297, 510
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	2 cut(s)	596, 613
TscAI	CASTG	3 cut(s)	235, 675, 772
TseFI	GTSAC	2 cut(s)	269, 557
TseI	GCWGC	1 cut(s)	106
Tsp45I	GTSAC	2 cut(s)	269, 557
TspDTI	ATGAA	2 cut(s)	291, 398
TspGWI	ACGGA	2 cut(s)	49, 166
TspRI	CASTG	3 cut(s)	235, 675, 772
VpaK11BI	GGWCC	1 cut(s)	287
XagI	CCTNNNNNAGG	1 cut(s)	155
XapI	RAATTY	1 cut(s)	297
XceI	RCATGY	2 cut(s)	277, 425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	772
XmnI	GAANNNNTTC	1 cut(s)	298
XspI	CTAG	2 cut(s)	353, 675
ZraI	GACGTC	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.