Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002674.1

Orthogroup ID

OG0009777

Physical Location & Seq

Genomic Coordinates Reverse (-)

49994 .. 50383

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002674.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgcctattcaattgggtacatgcaggtcatttagttttgacgaggaagaacaaagtgacctagaggaagaacagaaggacaaaggagtagaacaggatgacaaggtatactacaatagtgatgacattgagaatccaagggtcccagagtacgatgatgaactttgtgttgaacacagtgagaccgggtttccgagcatactgggagagtggtttccatactccaggttatcactgtcacctgtaggaggaggaaaatctagaagaggttcttcttgttccccaggcatagccactgggttgttgcttgggtttaggaagattttcgggctttgctttgagaaacgcgagaaacgctatactcgaagggatatatggagaatagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

129

Amino Acids

14.87

Weight (kDa)

4.76

Isoelectric Point (pI)

71.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32270 AT5G25340
fragaria_vesca	FvH4_2g28951
malus_domestica	MD08G1155200.v1.1 MD15G1126000.v1.1
prunus_persica	Prupe.1G481900_v2.0.a1
pyrus_communis	pycom08g12770 pycom15g11380
rosa_chinensis	RchiOBHm_Chr6g0297801
rosa_laevigata	RLG00000011561
rosa_multiflora	Rmu_sc0002674.1_g000017 Rmu_sc0003137.1_g000001 Rmu_sc0021574.1_g000002
rosa_roxburghii	Rroxscaffold_7G00170190 Rroxscaffold_7G00179040
rosa_rugosa	Rorug06G0275500
rosa_samantha	Rh6AG386200 Rh6BG394800 Rh6CG400500 Rh6DG386900
rosa_wichuraiana	Rw6G033660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	1 cut(s)	348
AfaI	GTAC	2 cut(s)	19, 152
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	2 cut(s)	11, 173
AjnI	CCWGG	2 cut(s)	224, 283
Alw26I	GTCTC	1 cut(s)	176
Asp700I	GAANNNNTTC	2 cut(s)	268, 323
AspS9I	GGNCC	1 cut(s)	142
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	142
BciT130I	CCWGG	2 cut(s)	226, 285
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	2 cut(s)	62, 261
BfmI	CTRYAG	1 cut(s)	243
BfuAI	ACCTGC	1 cut(s)	15
Bme1390I	CCNGG	3 cut(s)	187, 226, 285
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	143, 144
BmrFI	CCNGG	3 cut(s)	187, 226, 285
BmrI	ACTGGG	2 cut(s)	212, 306
BmuI	ACTGGG	2 cut(s)	212, 306
BpmI	CTGGAG	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	137, 283
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	207, 301
BseBI	CCWGG	2 cut(s)	226, 285
BseDI	CCNNGG	2 cut(s)	137, 283
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseNI	ACTGG	2 cut(s)	207, 301
BseRI	GAGGAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	128
Bso31I	GGTCTC	1 cut(s)	176
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	143, 144
BspMI	ACCTGC	1 cut(s)	15
BspTNI	GGTCTC	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	207, 301
BssECI	CCNNGG	2 cut(s)	137, 283
BssNAI	GTATAC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	137
Bst1107I	GTATAC	1 cut(s)	109
Bst2UI	CCWGG	2 cut(s)	226, 285
Bst4CI	ACNGT	2 cut(s)	179, 237
Bst6I	CTCTTC	1 cut(s)	259
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	348
BstMAI	GTCTC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	1 cut(s)	354
BstNI	CCWGG	2 cut(s)	226, 285
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	3 cut(s)	185, 224, 283
BstSFI	CTRYAG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	348
BstZ17I	GTATAC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	3 cut(s)	184, 233, 294
BveI	ACCTGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	18, 151
CviAII	CATG	1 cut(s)	21
CviJI	RGCY	2 cut(s)	293, 331
CviKI_1	RGCY	2 cut(s)	293, 331
CviQI	GTAC	2 cut(s)	18, 151
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	142
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	224, 283
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	1 cut(s)	24
FaiI	YATR	8 cut(s)	22, 109, 200, 220, 290, 360, 374, 376
FalI	AAGNNNNNCTT	2 cut(s)	256, 288
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	20
FblI	GTMKAC	1 cut(s)	108
FokI	GGATG	1 cut(s)	110
FspBI	CTAG	2 cut(s)	62, 261
GsuI	CTGGAG	1 cut(s)	208
HapII	CCGG	1 cut(s)	186
Hin1II	CATG	1 cut(s)	24
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	231
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	1 cut(s)	261
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	2 cut(s)	70, 360
HpyCH4III	ACNGT	2 cut(s)	179, 237
HpyCH4V	TGCA	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	1 cut(s)	354
Hsp92II	CATG	1 cut(s)	24
KflI	GGGWCCC	1 cut(s)	142
MaeI	CTAG	2 cut(s)	62, 261
MaeIII	GTNAC	2 cut(s)	56, 237
MboII	GAAGA	5 cut(s)	59, 80, 264, 276, 331
MfeI	CAATTG	1 cut(s)	11
MluCI	AATT	1 cut(s)	11
MnlI	CCTC	5 cut(s)	37, 58, 242, 245, 260
MroXI	GAANNNNTTC	2 cut(s)	268, 323
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	3 cut(s)	187, 226, 285
MunI	CAATTG	1 cut(s)	11
MvaI	CCWGG	2 cut(s)	226, 285
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	1 cut(s)	354
NciI	CCSGG	1 cut(s)	187
NlaIII	CATG	1 cut(s)	24
NlaIV	GGNNCC	2 cut(s)	143, 144
NmuCI	GTSAC	2 cut(s)	56, 237
NspI	RCATGY	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	361
PdmI	GAANNNNTTC	2 cut(s)	268, 323
PfeI	GAWTC	1 cut(s)	133
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	224, 283
PspGI	CCWGG	2 cut(s)	224, 283
PspN4I	GGNNCC	2 cut(s)	143, 144
PspPI	GGNCC	1 cut(s)	142
PspPPI	RGGWCCY	1 cut(s)	142
RsaI	GTAC	2 cut(s)	19, 152
RsaNI	GTAC	2 cut(s)	18, 151
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	3 cut(s)	187, 226, 285
SetI	ASST	6 cut(s)	29, 63, 108, 230, 244, 271
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	142
Sse9I	AATT	1 cut(s)	11
SspMI	CTAG	2 cut(s)	62, 261
StyD4I	CCNGG	3 cut(s)	185, 224, 283
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	179, 237
TaqI	TCGA	1 cut(s)	364
TasI	AATT	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	133
TscAI	CASTG	3 cut(s)	184, 240, 301
TseFI	GTSAC	2 cut(s)	56, 237
Tsp45I	GTSAC	2 cut(s)	56, 237
TspDTI	ATGAA	1 cut(s)	174
TspRI	CASTG	3 cut(s)	184, 240, 301
VpaK11BI	GGWCC	1 cut(s)	142
XagI	CCTNNNNNAGG	1 cut(s)	246
XbaI	TCTAGA	1 cut(s)	260
XceI	RCATGY	1 cut(s)	24
XmiI	GTMKAC	1 cut(s)	108
XmnI	GAANNNNTTC	2 cut(s)	268, 323
XspI	CTAG	2 cut(s)	62, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.