Rh6DG386900

ATP synthase B/B' CF(0)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0009777
Physical Location & Seq
Reverse (-)
57995084 .. 57997569
2486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG386900.1

Sequence Viewer

Length: 855 bp
ATGTCTTATAGCGCGTTGAACATCCAAGTTGACGATTTTGCCCCTAGGTTATCATCCTCGTCGGAGCGGCCTCGGCGCTCCCGCTCTATGCCCTTCTCGCCGCTGCTCATCATCGACGGCCTTTCGCGGAAGAGCTTCTCCTACTCGGCTCTCCCTCAGGAGCCGCTCAAGCTCTCCGTTCTCAAATTGGACGGCTCTAGCTTCGATATTGAGGTTCCCAAGACGGCCACTGTTTCAGAACTGAAGCGGGCGGTGGAGGCGGTTTTCAGTCACATGCCACGGAAGGGACCTGGAAAGATATCATGGCCGCATGTGTGGGGGCATTTCTGCTTGGGATATGCTGGTCAGAAGCTACTCGTTGAAACGGACCATATCAGAGACTATGGCATCAAAGACGGCGATCAGCTAGATTTTGTCCGGCATGTTTCAATCAGCTACATCCTGACAAGGAAGCAATCAAAAAGGCTCTCTGGCCCAAAACATCACAGGAGGTCATTTAGTTTTGACGAGGAAGAGCAGAGTGACCTAGAGGAAGAACAGAAGGACAAAGGAGTAGAACAGGATGACGAGGTATACTACAATAGTGATGACATTGAGAATCCAAGGGTGCCAGAGTATGATGATGAACTTTGTGTTGAACACAGTGAGGCCGGGTTTCCGAGCATACTGGGAGAGTGGTTTCCATACTCCAGGTTATCACTGTCACCTGTAGGAGGAGGAAAATCTAGAAGAGGTTCTTCTTGTTCCCCAGGCATAGCCACTGGGTTGTTGCTTGGCTTTAGGAAGATTTTCGGGCTTTGCTTTGAGAAACGCGAGAAACGCTATACTCGAAGGGATATATGGAGAATAGATTAG

Protein Analysis

284

Amino Acids

32.4

Weight (kDa)

6.73

Isoelectric Point (pI)

67.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 56 - 142 9.3e-26 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 607
AccBSI CCGCTC 3 cut(s) 67, 84, 166
AccI GTMKAC 1 cut(s) 573
AccII CGCG 3 cut(s) 14, 127, 813
AciI CCGC 9 cut(s) 67, 82, 101, 127, 164, 247, 251, 260, 308
AcoI YGGCCR 2 cut(s) 225, 305
AcuI CTGAAG 1 cut(s) 263
AfiI CCNNNNNNNGG 2 cut(s) 284, 713
AgsI TTSAA 4 cut(s) 19, 362, 429, 638
AjnI CCWGG 3 cut(s) 289, 689, 748
AluBI AGCT 6 cut(s) 135, 172, 201, 352, 406, 435
AluI AGCT 6 cut(s) 135, 172, 201, 352, 406, 435
Alw26I GTCTC 1 cut(s) 372
AoxI GGCC 6 cut(s) 68, 118, 225, 305, 472, 648
ApeKI GCWGC 1 cut(s) 103
Asp700I GAANNNNTTC 3 cut(s) 134, 733, 788
AspA2I CCTAGG 1 cut(s) 44
AspLEI GCGC 2 cut(s) 14, 78
AspS9I GGNCC 3 cut(s) 287, 367, 473
AsuC2I CCSGG 1 cut(s) 652
AsuHPI GGTGA 1 cut(s) 696
AvaII GGWCC 2 cut(s) 287, 367
AvrII CCTAGG 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 156
BanI GGYRCC 1 cut(s) 607
BbvI GCAGC 1 cut(s) 90
BceAI ACGGC 4 cut(s) 133, 208, 240, 412
BciT130I CCWGG 3 cut(s) 291, 691, 750
BcnI CCSGG 1 cut(s) 652
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 5 cut(s) 45, 198, 407, 527, 726
BfmI CTRYAG 1 cut(s) 708
BfoI RGCGCY 1 cut(s) 79
BisI GCNGC 5 cut(s) 68, 101, 104, 164, 308
BlnI CCTAGG 1 cut(s) 44
BlsI GCNGC 5 cut(s) 69, 102, 105, 165, 309
Bme1390I CCNGG 4 cut(s) 291, 652, 691, 750
Bme18I GGWCC 2 cut(s) 287, 367
BmgT120I GGNCC 3 cut(s) 287, 367, 473
BmiI GGNNCC 4 cut(s) 162, 216, 288, 609
BmrFI CCNGG 4 cut(s) 291, 652, 691, 750
BmrI ACTGGG 2 cut(s) 677, 771
BmsI GCATC 1 cut(s) 396
BmuI ACTGGG 2 cut(s) 677, 771
BpmI CTGGAG 1 cut(s) 673
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 652
BsaJI CCNNGG 5 cut(s) 44, 71, 278, 602, 748
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 713
Bse1I ACTGG 2 cut(s) 672, 766
Bse21I CCTNAGG 1 cut(s) 156
BseBI CCWGG 3 cut(s) 291, 691, 750
BseDI CCNNGG 5 cut(s) 44, 71, 278, 602, 748
BseGI GGATG 4 cut(s) 21, 53, 438, 568
BseLI CCNNNNNNNGG 2 cut(s) 284, 713
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 2 cut(s) 672, 766
BseRI GAGGAG 1 cut(s) 729
BseXI GCAGC 1 cut(s) 90
Bsh1236I CGCG 3 cut(s) 14, 127, 813
BshFI GGCC 6 cut(s) 70, 120, 227, 307, 474, 650
BshNI GGYRCC 1 cut(s) 607
BsiSI CCGG 2 cut(s) 418, 651
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 2 cut(s) 284, 713
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 1 cut(s) 300
BsnI GGCC 6 cut(s) 70, 120, 227, 307, 474, 650
Bsp143I GATC 1 cut(s) 400
BspACI CCGC 9 cut(s) 67, 82, 101, 127, 164, 247, 251, 260, 308
BspANI GGCC 6 cut(s) 70, 120, 227, 307, 474, 650
BspCNI CTCAG 1 cut(s) 169
BspFNI CGCG 3 cut(s) 14, 127, 813
BspLI GGNNCC 4 cut(s) 162, 216, 288, 609
BspQI GCTCTTC 2 cut(s) 125, 507
BspT107I GGYRCC 1 cut(s) 607
BsrBI CCGCTC 3 cut(s) 67, 84, 166
BsrI ACTGG 2 cut(s) 672, 766
BssECI CCNNGG 5 cut(s) 44, 71, 278, 602, 748
BssMI GATC 1 cut(s) 400
BssNAI GTATAC 1 cut(s) 574
BssT1I CCWWGG 2 cut(s) 44, 602
Bst1107I GTATAC 1 cut(s) 574
Bst2UI CCWGG 3 cut(s) 291, 691, 750
Bst4CI ACNGT 3 cut(s) 232, 644, 702
Bst6I CTCTTC 3 cut(s) 125, 507, 724
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 278
BstENI CCTNNNNNAGG 1 cut(s) 711
BstF5I GGATG 4 cut(s) 21, 53, 438, 568
BstFNI CGCG 3 cut(s) 14, 127, 813
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 2 cut(s) 14, 78
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 1 cut(s) 400
BstMWI GCNNNNNNNGC 5 cut(s) 73, 97, 169, 257, 819
BstNI CCWGG 3 cut(s) 291, 691, 750
BstNSI RCATGY 3 cut(s) 277, 314, 425
BstSCI CCNGG 4 cut(s) 289, 650, 689, 748
BstSFI CTRYAG 1 cut(s) 708
BstUI CGCG 3 cut(s) 14, 127, 813
BstV1I GCAGC 1 cut(s) 90
BstZ17I GTATAC 1 cut(s) 574
Bsu36I CCTNAGG 1 cut(s) 156
BsuRI GGCC 6 cut(s) 70, 120, 227, 307, 474, 650
BtgI CCRYGG 1 cut(s) 278
BtsCI GGATG 4 cut(s) 21, 53, 438, 568
BtsIMutI CAGTG 4 cut(s) 228, 649, 698, 759
Cac8I GCNNGC 1 cut(s) 249
CfoI GCGC 2 cut(s) 14, 78
Cfr13I GGNCC 3 cut(s) 287, 367, 473
CviAII CATG 4 cut(s) 274, 303, 311, 422
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
EaeI YGGCCR 2 cut(s) 225, 305
Eam1104I CTCTTC 3 cut(s) 125, 507, 724
EarI CTCTTC 3 cut(s) 125, 507, 724
Eco130I CCWWGG 2 cut(s) 44, 602
Eco32I GATATC 1 cut(s) 300
Eco47I GGWCC 2 cut(s) 287, 367
Eco57I CTGAAG 1 cut(s) 263
Eco81I CCTNAGG 1 cut(s) 156
EcoNI CCTNNNNNAGG 1 cut(s) 711
EcoO109I RGGNCCY 1 cut(s) 287
EcoRII CCWGG 3 cut(s) 289, 689, 748
EcoRV GATATC 1 cut(s) 300
EcoT14I CCWWGG 2 cut(s) 44, 602
ErhI CCWWGG 2 cut(s) 44, 602
FaeI CATG 4 cut(s) 277, 306, 314, 425
FalI AAGNNNNNCTT 2 cut(s) 721, 753
FaqI GGGAC 1 cut(s) 300
FatI CATG 4 cut(s) 273, 302, 310, 421
FauI CCCGC 2 cut(s) 89, 240
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 5 cut(s) 68, 101, 104, 164, 308
FokI GGATG 4 cut(s) 8, 40, 425, 575
Fsp4HI GCNGC 5 cut(s) 68, 101, 104, 164, 308
FspBI CTAG 5 cut(s) 45, 198, 407, 527, 726
GlaI GCGC 2 cut(s) 13, 77
GluI GCNGC 5 cut(s) 68, 101, 104, 164, 308
GsuI CTGGAG 1 cut(s) 673
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 6 cut(s) 70, 120, 227, 307, 474, 650
HapII CCGG 2 cut(s) 418, 651
HhaI GCGC 2 cut(s) 14, 78
Hin1II CATG 4 cut(s) 277, 306, 314, 425
Hin6I GCGC 2 cut(s) 12, 76
HinP1I GCGC 2 cut(s) 12, 76
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 1 cut(s) 598
HpaII CCGG 2 cut(s) 418, 651
HphI GGTGA 1 cut(s) 696
Hpy166II GTNNAC 2 cut(s) 31, 574
Hpy188I TCNGA 5 cut(s) 64, 238, 348, 377, 660
Hpy188III TCNNGA 3 cut(s) 158, 442, 726
Hpy8I GTNNAC 2 cut(s) 31, 574
Hpy99I CGWCG 2 cut(s) 64, 119
HpyAV CCTTC 4 cut(s) 103, 277, 535, 825
HpyCH4III ACNGT 3 cut(s) 232, 644, 702
HpyF10VI GCNNNNNNNGC 5 cut(s) 73, 97, 169, 257, 819
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 4 cut(s) 277, 306, 314, 425
HspAI GCGC 2 cut(s) 12, 76
Kzo9I GATC 1 cut(s) 400
LguI GCTCTTC 2 cut(s) 125, 507
LmnI GCTCC 3 cut(s) 64, 83, 160
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 396
MaeI CTAG 5 cut(s) 45, 198, 407, 527, 726
MaeIII GTNAC 3 cut(s) 269, 521, 702
MalI GATC 1 cut(s) 402
MbiI CCGCTC 3 cut(s) 67, 84, 166
MboI GATC 1 cut(s) 400
MboII GAAGA 6 cut(s) 142, 524, 545, 729, 741, 796
MluCI AATT 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 42
MroXI GAANNNNTTC 3 cut(s) 134, 733, 788
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 2 cut(s) 418, 651
MspR9I CCNGG 4 cut(s) 291, 652, 691, 750
MvaI CCWGG 3 cut(s) 291, 691, 750
MvnI CGCG 3 cut(s) 14, 127, 813
MwoI GCNNNNNNNGC 5 cut(s) 73, 97, 169, 257, 819
NciI CCSGG 1 cut(s) 652
NdeII GATC 1 cut(s) 400
NlaIII CATG 4 cut(s) 277, 306, 314, 425
NlaIV GGNNCC 4 cut(s) 162, 216, 288, 609
NmeAIII GCCGAG 2 cut(s) 52, 125
NmuCI GTSAC 3 cut(s) 269, 521, 702
NspI RCATGY 3 cut(s) 277, 314, 425
PciSI GCTCTTC 2 cut(s) 125, 507
PcsI WCGNNNNNNNCGW 1 cut(s) 826
PdmI GAANNNNTTC 3 cut(s) 134, 733, 788
PfeI GAWTC 1 cut(s) 598
PkrI GCNGC 5 cut(s) 69, 102, 105, 165, 309
PpuMI RGGWCCY 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 287
Psp6I CCWGG 3 cut(s) 289, 689, 748
PspGI CCWGG 3 cut(s) 289, 689, 748
PspN4I GGNNCC 4 cut(s) 162, 216, 288, 609
PspPI GGNCC 3 cut(s) 287, 367, 473
PspPPI RGGWCCY 1 cut(s) 287
SapI GCTCTTC 2 cut(s) 125, 507
SatI GCNGC 5 cut(s) 68, 101, 104, 164, 308
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 3 cut(s) 287, 367, 473
ScrFI CCNGG 4 cut(s) 291, 652, 691, 750
SfaNI GCATC 1 cut(s) 396
SfcI CTRYAG 1 cut(s) 708
SinI GGWCC 2 cut(s) 287, 367
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 1 cut(s) 185
SsiI CCGC 9 cut(s) 67, 82, 101, 127, 164, 247, 251, 260, 308
SspMI CTAG 5 cut(s) 45, 198, 407, 527, 726
StyD4I CCNGG 4 cut(s) 289, 650, 689, 748
StyI CCWWGG 2 cut(s) 44, 602
TaaI ACNGT 3 cut(s) 232, 644, 702
TaqI TCGA 3 cut(s) 114, 204, 829
TasI AATT 1 cut(s) 185
TauI GCSGC 4 cut(s) 70, 103, 166, 310
TfiI GAWTC 1 cut(s) 598
TscAI CASTG 4 cut(s) 235, 649, 705, 766
TseFI GTSAC 3 cut(s) 269, 521, 702
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 3 cut(s) 269, 521, 702
TspDTI ATGAA 1 cut(s) 639
TspGWI ACGGA 3 cut(s) 166, 295, 380
TspRI CASTG 4 cut(s) 235, 649, 705, 766
VpaK11BI GGWCC 2 cut(s) 287, 367
XagI CCTNNNNNAGG 1 cut(s) 711
XbaI TCTAGA 1 cut(s) 725
XceI RCATGY 3 cut(s) 277, 314, 425
XmaJI CCTAGG 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 573
XmnI GAANNNNTTC 3 cut(s) 134, 733, 788
XspI CTAG 5 cut(s) 45, 198, 407, 527, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.