Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009777

Physical Location & Seq

Genomic Coordinates Forward (+)

11334033 .. 11335618

Gene Structure 1586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCGTATAGCACGCTGAGGATTGACGATGATGATTTTGTCCCTGTCCGGCAGCCGTCGATCGAACGGCATCGCCGCTCCAATTCTCTGCCGTTTGTGCCGTTGCTGCTCGTCGATGGCTTTTCCCGCAAGAGCTTCTCCTACTCCGCGCTTCCTCAGGAGCCACTCCGGCTCTCCGTTATGAAATTGGACGGCTCTTGCTTCGACATTCAAGTTGCTATGACGGCCACGGTTTTAGAATTGAAACAGGCAGTTGAGGCCGTTTTCAGTCACATGCCACAGAAGGGACCGGGAAAAATTTCATGGCCACACGTGTGGGGTCATTTCTGCTTGTGCTACGGTAATCAGAAGCTACTTGTTGAAACTGATCGATCATCAACCATTATGGAATCAAAGATGGTGATCAGCTGCATTTTGTCCGGCATGTTTCAATCAGCTACAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

149

Amino Acids

16.62

Weight (kDa)

7.71

Isoelectric Point (pI)

58.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32270 AT5G25340
fragaria_vesca	FvH4_2g28951
malus_domestica	MD08G1155200.v1.1 MD15G1126000.v1.1
prunus_persica	Prupe.1G481900_v2.0.a1
pyrus_communis	pycom08g12770 pycom15g11380
rosa_chinensis	RchiOBHm_Chr6g0297801
rosa_laevigata	RLG00000011561
rosa_multiflora	Rmu_sc0002674.1_g000017 Rmu_sc0003137.1_g000001 Rmu_sc0021574.1_g000002
rosa_roxburghii	Rroxscaffold_7G00170190 Rroxscaffold_7G00179040
rosa_rugosa	Rorug06G0275500
rosa_samantha	Rh6AG386200 Rh6BG394800 Rh6CG400500 Rh6DG386900
rosa_wichuraiana	Rw6G033660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	78
AccII	CGCG	1 cut(s)	149
AciI	CCGC	3 cut(s)	76, 127, 147
AcoI	YGGCCR	2 cut(s)	225, 305
AcsI	RAATTY	1 cut(s)	297
AcvI	CACGTG	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	284
AflIII	ACRYGT	2 cut(s)	310, 312
AgsI	TTSAA	4 cut(s)	212, 244, 362, 431
AleI	CACNNNNGTG	1 cut(s)	313
AluBI	AGCT	4 cut(s)	135, 352, 408, 437
AluI	AGCT	4 cut(s)	135, 352, 408, 437
AoxI	GGCC	3 cut(s)	225, 258, 305
ApeKI	GCWGC	3 cut(s)	52, 106, 408
ApoI	RAATTY	1 cut(s)	297
Asp700I	GAANNNNTTC	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	287
AxyI	CCTNAGG	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	307
BbrPI	CACGTG	1 cut(s)	313
BbvCI	CCTCAGC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	64, 93, 395
BccI	CCATC	2 cut(s)	110, 391
BceAI	ACGGC	7 cut(s)	40, 76, 83, 85, 208, 240, 245
BclI	TGATCA	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	438
BglI	GCCNNNNNGGC	1 cut(s)	169
BisI	GCNGC	4 cut(s)	53, 76, 107, 409
BlsI	GCNGC	4 cut(s)	54, 77, 108, 410
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	162, 288
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	79
Bpu10I	CCTNAGC	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	370
BsaAI	YACGTR	1 cut(s)	313
BsaBI	GATNNNNATC	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse21I	CCTNAGG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	401
BseCI	ATCGAT	1 cut(s)	370
BseDI	CCNNGG	1 cut(s)	228
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMII	CTCAG	2 cut(s)	8, 170
BseXI	GCAGC	3 cut(s)	64, 93, 395
Bsh1236I	CGCG	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	227, 260, 307
BshVI	ATCGAT	1 cut(s)	370
BsiEI	CGRYCG	1 cut(s)	63
BsiSI	CCGG	4 cut(s)	49, 169, 290, 420
BslFI	GGGAC	2 cut(s)	26, 300
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmFI	GGGAC	2 cut(s)	26, 300
BsnI	GGCC	3 cut(s)	227, 260, 307
Bsp143I	GATC	4 cut(s)	60, 367, 371, 402
BspACI	CCGC	3 cut(s)	76, 127, 147
BspANI	GGCC	3 cut(s)	227, 260, 307
BspCNI	CTCAG	2 cut(s)	9, 169
BspDI	ATCGAT	1 cut(s)	370
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	2 cut(s)	162, 288
BsrBI	CCGCTC	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	4 cut(s)	60, 367, 371, 402
Bst4CI	ACNGT	2 cut(s)	232, 341
BstBAI	YACGTR	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	2 cut(s)	17, 156
BstDSI	CCRYGG	1 cut(s)	228
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	4 cut(s)	63, 370, 374, 405
BstMBI	GATC	4 cut(s)	60, 367, 371, 402
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	6 cut(s)	97, 106, 126, 169, 224, 257
BstNSI	RCATGY	2 cut(s)	277, 427
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	438
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	3 cut(s)	64, 93, 395
BstXI	CCANNNNNNTGG	1 cut(s)	315
Bsu15I	ATCGAT	1 cut(s)	370
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	3 cut(s)	227, 260, 307
BsuTUI	ATCGAT	1 cut(s)	370
BtgI	CCRYGG	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	56
Cac8I	GCNNGC	1 cut(s)	14
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	287
ClaI	ATCGAT	1 cut(s)	370
CviAII	CATG	4 cut(s)	274, 303, 424, 444
DdeI	CTNAG	2 cut(s)	17, 156
DpnI	GATC	4 cut(s)	62, 369, 373, 404
DpnII	GATC	4 cut(s)	60, 367, 371, 402
EaeI	YGGCCR	2 cut(s)	225, 305
Eco47I	GGWCC	1 cut(s)	287
Eco72I	CACGTG	1 cut(s)	313
Eco81I	CCTNAGG	1 cut(s)	156
FaeI	CATG	4 cut(s)	277, 306, 427, 447
FaiI	YATR	8 cut(s)	9, 182, 221, 275, 304, 386, 425, 445
FaqI	GGGAC	2 cut(s)	26, 300
FatI	CATG	4 cut(s)	273, 302, 423, 443
FauI	CCCGC	1 cut(s)	134
FbaI	TGATCA	1 cut(s)	402
Fnu4HI	GCNGC	4 cut(s)	53, 76, 107, 409
Fsp4HI	GCNGC	4 cut(s)	53, 76, 107, 409
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	4 cut(s)	53, 76, 107, 409
HaeIII	GGCC	3 cut(s)	227, 260, 307
HapII	CCGG	4 cut(s)	49, 169, 290, 420
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	4 cut(s)	277, 306, 427, 447
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	1 cut(s)	389
HpaII	CCGG	4 cut(s)	49, 169, 290, 420
HphI	GGTGA	1 cut(s)	412
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	1 cut(s)	158
Hpy99I	CGWCG	2 cut(s)	61, 116
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	232, 341
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	1 cut(s)	411
HpyF10VI	GCNNNNNNNGC	6 cut(s)	97, 106, 126, 169, 224, 257
HpyF3I	CTNAG	2 cut(s)	17, 156
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	4 cut(s)	277, 306, 427, 447
HspAI	GCGC	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	4 cut(s)	60, 367, 371, 402
LmnI	GCTCC	2 cut(s)	83, 160
LpnPI	CCDG	7 cut(s)	57, 62, 143, 182, 233, 303, 433
Lsp1109I	GCAGC	3 cut(s)	64, 93, 395
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	4 cut(s)	62, 369, 373, 404
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	4 cut(s)	60, 367, 371, 402
MlsI	TGGCCA	1 cut(s)	307
MluCI	AATT	4 cut(s)	82, 185, 239, 297
MluNI	TGGCCA	1 cut(s)	307
MnlI	CCTC	3 cut(s)	12, 165, 250
Mox20I	TGGCCA	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	298
MscI	TGGCCA	1 cut(s)	307
MslI	CAYNNNNRTG	1 cut(s)	313
Msp20I	TGGCCA	1 cut(s)	307
MspA1I	CMGCKG	1 cut(s)	408
MspI	CCGG	4 cut(s)	49, 169, 290, 420
MspR9I	CCNGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	6 cut(s)	97, 106, 126, 169, 224, 257
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	4 cut(s)	60, 367, 371, 402
NlaIII	CATG	4 cut(s)	277, 306, 427, 447
NlaIV	GGNNCC	2 cut(s)	162, 288
NmuCI	GTSAC	1 cut(s)	269
NspI	RCATGY	2 cut(s)	277, 427
OliI	CACNNNNGTG	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	4 cut(s)	54, 77, 108, 410
Ple19I	CGATCG	1 cut(s)	63
PmaCI	CACGTG	1 cut(s)	313
PmlI	CACGTG	1 cut(s)	313
Ppu21I	YACGTR	1 cut(s)	313
PspCI	CACGTG	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	162, 288
PspPI	GGNCC	1 cut(s)	287
PvuI	CGATCG	1 cut(s)	63
PvuII	CAGCTG	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	313
SatI	GCNGC	4 cut(s)	53, 76, 107, 409
Sau3AI	GATC	4 cut(s)	60, 367, 371, 402
Sau96I	GGNCC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	5 cut(s)	137, 315, 354, 410, 439
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	438
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	313
Sse9I	AATT	4 cut(s)	82, 185, 239, 297
SsiI	CCGC	3 cut(s)	76, 127, 147
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	232, 341
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	5 cut(s)	59, 63, 114, 204, 370
TasI	AATT	4 cut(s)	82, 185, 239, 297
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	389
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	3 cut(s)	52, 106, 408
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	197, 291
TspGWI	ACGGA	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	297
XceI	RCATGY	2 cut(s)	277, 427
XmnI	GAANNNNTTC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.