Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009777

Physical Location & Seq

Genomic Coordinates Reverse (-)

42274156 .. 42276128

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0275500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCTTTTTCAGTGGAGGGTTTCGTTGTGTTTTTTCTATTTTGTGGTGTGATGCTTGCAAATGGTGATGTTGGCTTTGATGAAAATTATCATGTCATATGGGGTTTTGATCATGCCTTGTATCAGGATGGAGGGACAGGGATGCAGATTTACTTGGATCAATATACGGGGGCTGGGTTTCAATCCAAGCAATGGTTCGGTTCTGGGTGGTTTCATATGAGGATCAAGGTACCAGTGAGGGATTGTGCTGGAGTTGTCCTAGCTTTTTATCTAAGATCAGAGGGTGATCGTAACCAGGATGAGCTAGACTTTGAGTTCTTGGGTAATAGAGAAGGCAAGCCAATCACATTGCAGACAAATGTGATTACAAATGGTGATAACTTCAGAGAGCAAAGGACACTTCTTTGGTTTGACCCAACAGCAGATTTTCATGACTACAAGATTCTTTGGAACCATCATCAAGTTGTCTTTTATATCGACGATATCCCCATCAGGGTTTTTAGGAACAACAAAAAAATTAAGGTTCCCTATCTAACGCGACCGATGGTAATAGATGCAAGCATATGGGATGGATCAGATTGGGCAACTGATGGAGGCCAAACAAAGATCGACTATAACCATGCACCATTTAGAGCTTATTTCCAAGGGTTTGACATGAATGCCTGCTCACTAGACAAGTCCAAGACCAATGTCTCGGAATGTTATGCTACAAAATATTTGTGGAACCACAGGGTCTATTGGCAACTAAACCCAACGGAACAAGAAGCATATGACAGGGTGAGAAGAGAATATATGAACTATGACTATTGTACTGATACGCAAAGGTTCCACACGCTTCCCCGAGAGTGCACCAGTGATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_B ubiquitin

Protein Analysis

287

Amino Acids

33.73

Weight (kDa)

5.33

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	27 - 206	3.2e-54	Glycosyl hydrolases family 16
XET_C	PF06955	238 - 283	3.2e-15	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32270 AT5G25340
fragaria_vesca	FvH4_2g28951
malus_domestica	MD08G1155200.v1.1 MD15G1126000.v1.1
prunus_persica	Prupe.1G481900_v2.0.a1
pyrus_communis	pycom08g12770 pycom15g11380
rosa_chinensis	RchiOBHm_Chr6g0297801
rosa_laevigata	RLG00000011561
rosa_multiflora	Rmu_sc0002674.1_g000017 Rmu_sc0003137.1_g000001 Rmu_sc0021574.1_g000002
rosa_roxburghii	Rroxscaffold_7G00170190 Rroxscaffold_7G00179040
rosa_rugosa	Rorug06G0275500
rosa_samantha	Rh6AG386200 Rh6BG394800 Rh6CG400500 Rh6DG386900
rosa_wichuraiana	Rw6G033660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	229
AccB7I	CCANNNNNTGG	1 cut(s)	192
AccII	CGCG	1 cut(s)	538
AclWI	GGATC	3 cut(s)	165, 230, 580
AcuI	CTGAAG	1 cut(s)	367
AfaI	GTAC	2 cut(s)	231, 811
AfiI	CCNNNNNNNGG	2 cut(s)	192, 493
AgsI	TTSAA	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	294
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	4 cut(s)	263, 304, 635, 861
AluI	AGCT	4 cut(s)	263, 304, 635, 861
Alw21I	GWGCWC	1 cut(s)	851
Alw26I	GTCTC	1 cut(s)	697
Alw44I	GTGCAC	1 cut(s)	847
AlwI	GGATC	3 cut(s)	165, 230, 580
Ama87I	CYCGRG	1 cut(s)	840
AoxI	GGCC	1 cut(s)	595
ApaLI	GTGCAC	1 cut(s)	847
Asp718I	GGTACC	1 cut(s)	229
AsuHPI	GGTGA	4 cut(s)	77, 296, 386, 790
AvaI	CYCGRG	1 cut(s)	840
BaeGI	GKGCMC	1 cut(s)	851
BanI	GGYRCC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	851
BccI	CCATC	6 cut(s)	122, 462, 497, 538, 563, 584
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	697
BfaI	CTAG	4 cut(s)	260, 305, 671, 862
Bme1390I	CCNGG	1 cut(s)	296
BmeT110I	CYCGRG	1 cut(s)	840
BmiI	GGNNCC	5 cut(s)	231, 452, 525, 725, 827
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	3 cut(s)	42, 132, 544
BoxI	GACNNNNGTC	1 cut(s)	689
BpmI	CTGGAG	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 493
Bse1I	ACTGG	2 cut(s)	233, 852
Bse3DI	GCAATG	2 cut(s)	197, 347
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	4 cut(s)	133, 147, 304, 574
BseLI	CCNNNNNNNGG	2 cut(s)	192, 493
BseMI	GCAATG	2 cut(s)	197, 347
BseNI	ACTGG	2 cut(s)	233, 852
BseSI	GKGCMC	1 cut(s)	851
BseYI	CCCAGC	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	538
Bsh1285I	CGRYCG	1 cut(s)	542
BshFI	GGCC	1 cut(s)	597
BshNI	GGYRCC	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	851
BsiHKCI	CYCGRG	1 cut(s)	840
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	192, 493
BsmAI	GTCTC	1 cut(s)	697
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	1 cut(s)	597
BsoBI	CYCGRG	1 cut(s)	840
Bsp1286I	GDGCHC	1 cut(s)	851
Bsp143I	GATC	7 cut(s)	109, 157, 222, 275, 286, 572, 606
BspANI	GGCC	1 cut(s)	597
BspFNI	CGCG	1 cut(s)	538
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	5 cut(s)	231, 452, 525, 725, 827
BspPI	GGATC	3 cut(s)	165, 230, 580
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	2 cut(s)	197, 347
BsrI	ACTGG	2 cut(s)	233, 852
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	7 cut(s)	109, 157, 222, 275, 286, 572, 606
BssT1I	CCWWGG	1 cut(s)	643
Bst2UI	CCWGG	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	778
BstC8I	GCNNGC	4 cut(s)	57, 338, 559, 664
BstDEI	CTNAG	1 cut(s)	272
BstF5I	GGATG	4 cut(s)	133, 147, 304, 574
BstFNI	CGCG	1 cut(s)	538
BstKTI	GATC	7 cut(s)	112, 160, 225, 278, 289, 575, 609
BstMAI	GTCTC	1 cut(s)	697
BstMBI	GATC	7 cut(s)	109, 157, 222, 275, 286, 572, 606
BstMCI	CGRYCG	1 cut(s)	542
BstNI	CCWGG	1 cut(s)	296
BstPAI	GACNNNNGTC	1 cut(s)	689
BstSCI	CCNGG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	851
BstUI	CGCG	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	597
BtsCI	GGATG	4 cut(s)	133, 147, 304, 574
BtsIMutI	CAGTG	3 cut(s)	18, 240, 859
Cac8I	GCNNGC	4 cut(s)	57, 338, 559, 664
CciI	TCATGA	1 cut(s)	430
Csp6I	GTAC	2 cut(s)	230, 810
CviAII	CATG	5 cut(s)	92, 113, 431, 620, 655
CviJI	RGCY	9 cut(s)	5, 75, 173, 263, 304, 340, 597, 635, 861
CviKI_1	RGCY	9 cut(s)	5, 75, 173, 263, 304, 340, 597, 635, 861
CviQI	GTAC	2 cut(s)	230, 810
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	7 cut(s)	111, 159, 224, 277, 288, 574, 608
DpnII	GATC	7 cut(s)	109, 157, 222, 275, 286, 572, 606
Eam1104I	CTCTTC	1 cut(s)	778
EarI	CTCTTC	1 cut(s)	778
Eco130I	CCWWGG	1 cut(s)	643
Eco32I	GATATC	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	367
Eco88I	CYCGRG	1 cut(s)	840
EcoRII	CCWGG	1 cut(s)	294
EcoRV	GATATC	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	5 cut(s)	95, 116, 434, 623, 658
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	5 cut(s)	91, 112, 430, 619, 654
FauNDI	CATATG	4 cut(s)	98, 216, 563, 769
FbaI	TGATCA	1 cut(s)	109
FokI	GGATG	4 cut(s)	140, 154, 311, 581
FspBI	CTAG	4 cut(s)	260, 305, 671, 862
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	597
Hin1II	CATG	5 cut(s)	95, 116, 434, 623, 658
HinfI	GANTC	1 cut(s)	442
HphI	GGTGA	4 cut(s)	77, 296, 386, 790
Hpy166II	GTNNAC	1 cut(s)	849
Hpy188I	TCNGA	4 cut(s)	280, 386, 577, 697
Hpy188III	TCNNGA	2 cut(s)	125, 431
Hpy8I	GTNNAC	1 cut(s)	849
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	1 cut(s)	326
HpyCH4V	TGCA	6 cut(s)	59, 145, 352, 557, 623, 849
HpyF3I	CTNAG	1 cut(s)	272
Hsp92II	CATG	5 cut(s)	95, 116, 434, 623, 658
KpnI	GGTACC	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	7 cut(s)	109, 157, 222, 275, 286, 572, 606
LweI	GCATC	3 cut(s)	42, 132, 544
MaeI	CTAG	4 cut(s)	260, 305, 671, 862
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	7 cut(s)	111, 159, 224, 277, 288, 574, 608
MboI	GATC	7 cut(s)	109, 157, 222, 275, 286, 572, 606
MboII	GAAGA	1 cut(s)	795
MhlI	GDGCHC	1 cut(s)	851
MluCI	AATT	2 cut(s)	85, 516
MnlI	CCTC	6 cut(s)	10, 125, 213, 231, 274, 587
MseI	TTAA	1 cut(s)	519
MspR9I	CCNGG	1 cut(s)	296
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	538
NdeI	CATATG	4 cut(s)	98, 216, 563, 769
NdeII	GATC	7 cut(s)	109, 157, 222, 275, 286, 572, 606
NlaIII	CATG	5 cut(s)	95, 116, 434, 623, 658
NlaIV	GGNNCC	5 cut(s)	231, 452, 525, 725, 827
PagI	TCATGA	1 cut(s)	430
PctI	GAATGC	1 cut(s)	664
PfeI	GAWTC	1 cut(s)	442
PflMI	CCANNNNNTGG	1 cut(s)	192
PshAI	GACNNNNGTC	1 cut(s)	689
Psp6I	CCWGG	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	5 cut(s)	231, 452, 525, 725, 827
RsaI	GTAC	2 cut(s)	231, 811
RsaNI	GTAC	2 cut(s)	230, 810
SaqAI	TTAA	1 cut(s)	519
Sau3AI	GATC	7 cut(s)	109, 157, 222, 275, 286, 572, 606
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	851
SetI	ASST	7 cut(s)	231, 265, 306, 525, 637, 827, 863
SfaNI	GCATC	3 cut(s)	42, 132, 544
Sse9I	AATT	2 cut(s)	85, 516
SspI	AATATT	1 cut(s)	716
SspMI	CTAG	4 cut(s)	260, 305, 671, 862
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	643
TaqI	TCGA	2 cut(s)	477, 609
TaqII	GACCGA	1 cut(s)	556
TasI	AATT	2 cut(s)	85, 516
TatI	WGTACW	1 cut(s)	809
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	3 cut(s)	18, 240, 859
TspDTI	ATGAA	5 cut(s)	96, 203, 419, 671, 809
TspGWI	ACGGA	1 cut(s)	770
TspRI	CASTG	3 cut(s)	18, 240, 859
Van91I	CCANNNNNTGG	1 cut(s)	192
VneI	GTGCAC	1 cut(s)	847
XspI	CTAG	4 cut(s)	260, 305, 671, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.