Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003137.1

Orthogroup ID

OG0009777

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1804

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003137.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 305 bp

atgtcttatagcgcgttgaacatccaagatgacgattttgcccctaggttatcatcctcgtcggagcggcctcggcgctcccgctctatgcccttctcgccgctgctcatcatcgacggcctttcgcggaagagcttctcctactcggcgctccctcaggagccgctcaagctctccgttctcaaattggacggctctagcttcgatattgaggttcccaagacggccactgtttcagaactgaagcgggcggtggaggcggttttcagccacatgccacggaagggacctggaaagatatcatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_B ubiquitin

Protein Analysis

101

Amino Acids

11.16

Weight (kDa)

9.69

Isoelectric Point (pI)

77.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32270 AT5G25340
fragaria_vesca	FvH4_2g28951
malus_domestica	MD08G1155200.v1.1 MD15G1126000.v1.1
prunus_persica	Prupe.1G481900_v2.0.a1
pyrus_communis	pycom08g12770 pycom15g11380
rosa_chinensis	RchiOBHm_Chr6g0297801
rosa_laevigata	RLG00000011561
rosa_multiflora	Rmu_sc0002674.1_g000017 Rmu_sc0003137.1_g000001 Rmu_sc0021574.1_g000002
rosa_roxburghii	Rroxscaffold_7G00170190 Rroxscaffold_7G00179040
rosa_rugosa	Rorug06G0275500
rosa_samantha	Rh6AG386200 Rh6BG394800 Rh6CG400500 Rh6DG386900
rosa_wichuraiana	Rw6G033660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	67, 84, 166
AccII	CGCG	2 cut(s)	14, 127
AciI	CCGC	8 cut(s)	67, 82, 101, 127, 164, 247, 251, 260
AcoI	YGGCCR	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	3 cut(s)	135, 172, 201
AluI	AGCT	3 cut(s)	135, 172, 201
AoxI	GGCC	3 cut(s)	68, 118, 225
ApeKI	GCWGC	1 cut(s)	103
Asp700I	GAANNNNTTC	1 cut(s)	134
AspA2I	CCTAGG	1 cut(s)	44
AspLEI	GCGC	3 cut(s)	14, 78, 151
AspS9I	GGNCC	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	287
AvrII	CCTAGG	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	90
BceAI	ACGGC	3 cut(s)	133, 208, 240
BciT130I	CCWGG	1 cut(s)	291
BfaI	CTAG	2 cut(s)	45, 198
BfoI	RGCGCY	2 cut(s)	79, 152
BisI	GCNGC	4 cut(s)	68, 101, 104, 164
BlnI	CCTAGG	1 cut(s)	44
BlsI	GCNGC	4 cut(s)	69, 102, 105, 165
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	3 cut(s)	162, 216, 288
BmrFI	CCNGG	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	44, 71, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse21I	CCTNAGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	44, 71, 278
BseGI	GGATG	2 cut(s)	21, 53
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	90
Bsh1236I	CGCG	2 cut(s)	14, 127
BshFI	GGCC	3 cut(s)	70, 120, 227
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	3 cut(s)	70, 120, 227
BspACI	CCGC	8 cut(s)	67, 82, 101, 127, 164, 247, 251, 260
BspANI	GGCC	3 cut(s)	70, 120, 227
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	2 cut(s)	14, 127
BspLI	GGNNCC	3 cut(s)	162, 216, 288
BspQI	GCTCTTC	1 cut(s)	125
BsrBI	CCGCTC	3 cut(s)	67, 84, 166
BssECI	CCNNGG	3 cut(s)	44, 71, 278
BssT1I	CCWWGG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	278
BstF5I	GGATG	2 cut(s)	21, 53
BstFNI	CGCG	2 cut(s)	14, 127
BstH2I	RGCGCY	2 cut(s)	79, 152
BstHHI	GCGC	3 cut(s)	14, 78, 151
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 97, 169, 257
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	289
BstUI	CGCG	2 cut(s)	14, 127
BstV1I	GCAGC	1 cut(s)	90
Bsu36I	CCTNAGG	1 cut(s)	156
BsuRI	GGCC	3 cut(s)	70, 120, 227
BtgI	CCRYGG	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	21, 53
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	249
CfoI	GCGC	3 cut(s)	14, 78, 151
Cfr13I	GGNCC	1 cut(s)	287
CviAII	CATG	2 cut(s)	274, 303
CviJI	RGCY	9 cut(s)	70, 120, 135, 163, 172, 195, 201, 227, 270
CviKI_1	RGCY	9 cut(s)	70, 120, 135, 163, 172, 195, 201, 227, 270
DdeI	CTNAG	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	44
Eco32I	GATATC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	263
Eco81I	CCTNAGG	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	1 cut(s)	277
FaiI	YATR	4 cut(s)	9, 89, 275, 304
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	1 cut(s)	273
FauI	CCCGC	2 cut(s)	89, 240
Fnu4HI	GCNGC	4 cut(s)	68, 101, 104, 164
FokI	GGATG	2 cut(s)	8, 40
Fsp4HI	GCNGC	4 cut(s)	68, 101, 104, 164
FspBI	CTAG	2 cut(s)	45, 198
GlaI	GCGC	3 cut(s)	13, 77, 150
GluI	GCNGC	4 cut(s)	68, 101, 104, 164
HaeII	RGCGCY	2 cut(s)	79, 152
HaeIII	GGCC	3 cut(s)	70, 120, 227
HhaI	GCGC	3 cut(s)	14, 78, 151
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	3 cut(s)	12, 76, 149
HinP1I	GCGC	3 cut(s)	12, 76, 149
Hpy188I	TCNGA	2 cut(s)	64, 238
Hpy188III	TCNNGA	1 cut(s)	158
Hpy99I	CGWCG	2 cut(s)	64, 119
HpyAV	CCTTC	2 cut(s)	103, 277
HpyCH4III	ACNGT	1 cut(s)	232
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 97, 169, 257
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	3 cut(s)	12, 76, 149
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	4 cut(s)	64, 83, 156, 160
LpnPI	CCDG	2 cut(s)	143, 276
Lsp1109I	GCAGC	1 cut(s)	90
MaeI	CTAG	2 cut(s)	45, 198
MbiI	CCGCTC	3 cut(s)	67, 84, 166
MboII	GAAGA	1 cut(s)	142
MluCI	AATT	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	5 cut(s)	67, 81, 165, 205, 250
MroXI	GAANNNNTTC	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	2 cut(s)	14, 127
MwoI	GCNNNNNNNGC	4 cut(s)	73, 97, 169, 257
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	3 cut(s)	162, 216, 288
NmeAIII	GCCGAG	2 cut(s)	52, 125
NspI	RCATGY	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	134
PkrI	GCNGC	4 cut(s)	69, 102, 105, 165
PpuMI	RGGWCCY	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	162, 216, 288
PspPI	GGNCC	1 cut(s)	287
PspPPI	RGGWCCY	1 cut(s)	287
SapI	GCTCTTC	1 cut(s)	125
SatI	GCNGC	4 cut(s)	68, 101, 104, 164
Sau96I	GGNCC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	6 cut(s)	50, 137, 174, 203, 216, 292
SinI	GGWCC	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	185
SsiI	CCGC	8 cut(s)	67, 82, 101, 127, 164, 247, 251, 260
SspMI	CTAG	2 cut(s)	45, 198
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	2 cut(s)	114, 204
TasI	AATT	1 cut(s)	185
TauI	GCSGC	3 cut(s)	70, 103, 166
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	1 cut(s)	103
TspGWI	ACGGA	2 cut(s)	166, 295
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	287
XceI	RCATGY	1 cut(s)	277
XmaJI	CCTAGG	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	2 cut(s)	45, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.