Rw6G033660

ATP synthase B/B' CF(0)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
58273993 .. 58277498
3506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033660.1

Sequence Viewer

Length: 1440 bp
ATGTCTTATAGCGCGTTGAACATCCAAGATGACGATTTTGCCCCTAGGTTATCATCCTCGTCGGAGCGGCCTCGGCGCTCCCGCTCTATGCCCTTCTCGCCGCTGCTCATCATCGACGGCCTTTCGCGGAAGAGCTTCTCCTACTCGGCGCTCCCTCAGGAGCCGCTCAAGCTCTCCGTTCTCAAATTGGACGGCTCTAGCTTCGATATTGAGGTTCCCAAGACGGCCACTGTTTCAGAACTGAAGCGGGCGGTGGAGGCGGTTTTCAGTCACATGCCACGGAAGGGACCTGGAAAGATATCATGGCCACACGTGTGGGGGCATTTCTGCTTGGGATATGCTGGTCAGAAGCTACTCGTTGAAACCGACCATATCAGAGACTATGGCATCAAAGACGGCGATCAGCTAGATTTTGTGCGGCATGTTTCAATCAGCTACATCCTGACAAGGAAGCAATCAAAAAGGCTCTCTGGCCCAAAACATCACAGGAGGTCATTTAGTTTTGACGAGGAAGAACAAAGTGACCTAGAGGAAGAACAGAAGGACAAAGGAGTAGAACAGGATGACAAGGTATACTACAATAGTGATGACATTGAGAATCCAAGGGTCCCAGAGTACGATGATGAACTTTGTGTTGAACACAGTGAGACCGGGTTTCCGAGCATACTGGGAGAGTGGTTTCCATACTCCAGGTTATCACTGTCACCTGTAGGAGGAGGAAAATCTAGAAGAGGTTCTTCTTGTTCCCCAGGCATAGCCACTGGGTTGTTGCTTGGGTTTAGGAAGATTTTCGGGCTTTGCTTTGAGAAACGCGAGAAACGCTATACTCGAAGGGATATATGGAGAATAGATTACTCAAGCTCTCATCTCGCCATGGCCAACATGATAATGGCCTCCTCCAAGGTCCCAATCTCCTCGGCGGCCCCTTCCCCCATTGCCAAGCCCAAGCTCGTCCCCGTCCAAATCTCCATCCCCAAGCTCACCAAACCCCACCTCCTCCAATCCCTCAAATCCCTCTCCCTAATCGCCGCCACCTCCCTCACCGTCGCGCCGCCGTCCCTCGCCGCCGAGATCGAGAAGGCGGCGCTCTTCGACTTCGACCTGACCCTGCCGATCCAGGCCGTCCAGTTCCTCCTCCTCATGGTGGCCCTCGACAAGATCTACTACTCGCCGCTCGGTAAGTTCATGGACGAGCGCGACGCCGACATCAGGGAGAAGCTGGGGAGCGTGAAGGACACGTCGGCGGAGGTGAAGCAGCTGGAGGAGCAGGGCGTGGCGATCATGAGGGCGGCGAGGGCGGAGATATCGGCGGCGCTGTCCAAGATGAAGAAGGAGACCCAGGCGGAGGTGGAGGTGAAGCTGGCGGAGGGGAGGAAGAAGGTGGAGGCAGAGTTGCAGGAGGCCTTGGGGAAACTGGAGGAGCAGAAGGAGGAGACTTGA

Protein Analysis

479

Amino Acids

53.59

Weight (kDa)

6.83

Isoelectric Point (pI)

57.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 56 - 142 2.3e-25 Ubiquitin-like domain
ATP-synt_B PF00430 369 - 478 4.1e-07 ATP synthase B/B' CF(0)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 4 cut(s) 67, 84, 166, 1174
AccI GTMKAC 1 cut(s) 573
AccII CGCG 5 cut(s) 14, 127, 813, 1049, 1197
AclWI GGATC 1 cut(s) 1108
AcoI YGGCCR 3 cut(s) 225, 305, 876
AcuI CTGAAG 1 cut(s) 263
AcvI CACGTG 1 cut(s) 313
AcyI GRCGYC 1 cut(s) 1200
AfaI GTAC 1 cut(s) 617
AfiI CCNNNNNNNGG 6 cut(s) 284, 713, 1141, 1144, 1209, 1345
AflIII ACRYGT 3 cut(s) 310, 312, 1236
AgsI TTSAA 4 cut(s) 19, 362, 429, 638
AjiI CACGTC 1 cut(s) 1239
AjnI CCWGG 5 cut(s) 289, 689, 748, 1116, 1338
AleI CACNNNNGTG 1 cut(s) 313
Alw26I GTCTC 4 cut(s) 372, 641, 1328, 1427
AlwI GGATC 1 cut(s) 1108
ApeKI GCWGC 2 cut(s) 103, 1255
Asp700I GAANNNNTTC 3 cut(s) 134, 733, 788
AspA2I CCTAGG 1 cut(s) 44
AspLEI GCGC 7 cut(s) 14, 78, 151, 1051, 1087, 1197, 1315
AspS9I GGNCC 6 cut(s) 287, 473, 607, 904, 922, 1147
AsuC2I CCSGG 1 cut(s) 652
AsuHPI GGTGA 5 cut(s) 696, 973, 1033, 1261, 1366
AvaII GGWCC 3 cut(s) 287, 607, 904
AvrII CCTAGG 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 156
BalI TGGCCA 2 cut(s) 307, 878
BbrPI CACGTG 1 cut(s) 313
BbvI GCAGC 2 cut(s) 90, 1267
BccI CCATC 1 cut(s) 977
BceAI ACGGC 6 cut(s) 133, 208, 240, 412, 1039, 1106
BciT130I CCWGG 5 cut(s) 291, 691, 750, 1118, 1340
BcnI CCSGG 1 cut(s) 652
BcoDI GTCTC 4 cut(s) 372, 641, 1328, 1427
BfaI CTAG 5 cut(s) 45, 198, 407, 527, 726
BfmI CTRYAG 1 cut(s) 708
BfoI RGCGCY 4 cut(s) 79, 152, 1088, 1316
BglII AGATCT 1 cut(s) 1158
BlnI CCTAGG 1 cut(s) 44
Bme1390I CCNGG 6 cut(s) 291, 652, 691, 750, 1118, 1340
Bme18I GGWCC 3 cut(s) 287, 607, 904
BmgBI CACGTC 1 cut(s) 1239
BmgT120I GGNCC 6 cut(s) 287, 473, 607, 904, 922, 1147
BmiI GGNNCC 7 cut(s) 162, 216, 288, 608, 609, 906, 924
BmrFI CCNGG 6 cut(s) 291, 652, 691, 750, 1118, 1340
BmrI ACTGGG 2 cut(s) 677, 771
BmsI GCATC 1 cut(s) 396
BmuI ACTGGG 2 cut(s) 677, 771
BpmI CTGGAG 3 cut(s) 673, 1280, 1436
BpuEI CTTGAG 2 cut(s) 152, 841
BpuMI CCSGG 1 cut(s) 652
BsaAI YACGTR 1 cut(s) 313
BsaHI GRCGYC 1 cut(s) 1200
BsaI GGTCTC 2 cut(s) 641, 1328
BsaXI ACNNNNNCTCC 4 cut(s) 978, 1008, 1376, 1406
Bsc4I CCNNNNNNNGG 6 cut(s) 284, 713, 1141, 1144, 1209, 1345
Bse1I ACTGG 4 cut(s) 672, 766, 1126, 1419
Bse21I CCTNAGG 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 933
BseBI CCWGG 5 cut(s) 291, 691, 750, 1118, 1340
BseGI GGATG 5 cut(s) 21, 53, 438, 568, 969
BseLI CCNNNNNNNGG 6 cut(s) 284, 713, 1141, 1144, 1209, 1345
BseMI GCAATG 1 cut(s) 933
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 4 cut(s) 672, 766, 1126, 1419
BseRI GAGGAG 8 cut(s) 729, 886, 904, 986, 1124, 1127, 1277, 1433
BseXI GCAGC 2 cut(s) 90, 1267
BseYI CCCAGC 1 cut(s) 1219
Bsh1236I CGCG 5 cut(s) 14, 127, 813, 1049, 1197
BsiSI CCGG 1 cut(s) 651
BslFI GGGAC 5 cut(s) 300, 593, 890, 938, 1042
BslI CCNNNNNNNGG 6 cut(s) 284, 713, 1141, 1144, 1209, 1345
BsmAI GTCTC 4 cut(s) 372, 641, 1328, 1427
BsmFI GGGAC 5 cut(s) 300, 593, 890, 938, 1042
Bso31I GGTCTC 2 cut(s) 641, 1328
Bsp143I GATC 5 cut(s) 400, 1071, 1113, 1158, 1278
Bsp19I CCATGG 1 cut(s) 873
BspCNI CTCAG 1 cut(s) 169
BspFNI CGCG 5 cut(s) 14, 127, 813, 1049, 1197
BspHI TCATGA 1 cut(s) 1281
BspLI GGNNCC 7 cut(s) 162, 216, 288, 608, 609, 906, 924
BspPI GGATC 1 cut(s) 1108
BspQI GCTCTTC 2 cut(s) 125, 1094
BspTNI GGTCTC 2 cut(s) 641, 1328
BsrBI CCGCTC 4 cut(s) 67, 84, 166, 1174
BsrDI GCAATG 1 cut(s) 933
BsrI ACTGG 4 cut(s) 672, 766, 1126, 1419
BssMI GATC 5 cut(s) 400, 1071, 1113, 1158, 1278
BssNAI GTATAC 1 cut(s) 574
BssNI GRCGYC 1 cut(s) 1200
BssT1I CCWWGG 5 cut(s) 44, 602, 873, 900, 1404
Bst1107I GTATAC 1 cut(s) 574
Bst2UI CCWGG 5 cut(s) 291, 691, 750, 1118, 1340
Bst4CI ACNGT 4 cut(s) 232, 644, 702, 1045
Bst6I CTCTTC 3 cut(s) 125, 724, 1094
BstACI GRCGYC 1 cut(s) 1200
BstBAI YACGTR 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 249, 1362
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 2 cut(s) 278, 873
BstENI CCTNNNNNAGG 1 cut(s) 711
BstF5I GGATG 5 cut(s) 21, 53, 438, 568, 969
BstFNI CGCG 5 cut(s) 14, 127, 813, 1049, 1197
BstH2I RGCGCY 4 cut(s) 79, 152, 1088, 1316
BstHHI GCGC 7 cut(s) 14, 78, 151, 1051, 1087, 1197, 1315
BstKTI GATC 5 cut(s) 403, 1074, 1116, 1161, 1281
BstMAI GTCTC 4 cut(s) 372, 641, 1328, 1427
BstMBI GATC 5 cut(s) 400, 1071, 1113, 1158, 1278
BstMWI GCNNNNNNNGC 7 cut(s) 73, 97, 169, 257, 819, 1264, 1295
BstNI CCWGG 5 cut(s) 291, 691, 750, 1118, 1340
BstNSI RCATGY 2 cut(s) 277, 425
BstSCI CCNGG 6 cut(s) 289, 650, 689, 748, 1116, 1338
BstSFI CTRYAG 1 cut(s) 708
BstUI CGCG 5 cut(s) 14, 127, 813, 1049, 1197
BstV1I GCAGC 2 cut(s) 90, 1267
BstX2I RGATCY 1 cut(s) 1158
BstXI CCANNNNNNTGG 1 cut(s) 315
BstYI RGATCY 1 cut(s) 1158
BstZ17I GTATAC 1 cut(s) 574
Bsu36I CCTNAGG 1 cut(s) 156
BtgI CCRYGG 2 cut(s) 278, 873
BtrI CACGTC 1 cut(s) 1239
BtsCI GGATG 5 cut(s) 21, 53, 438, 568, 969
BtsIMutI CAGTG 4 cut(s) 228, 649, 698, 759
Cac8I GCNNGC 2 cut(s) 249, 1362
CciI TCATGA 1 cut(s) 1281
CfoI GCGC 7 cut(s) 14, 78, 151, 1051, 1087, 1197, 1315
Cfr13I GGNCC 6 cut(s) 287, 473, 607, 904, 922, 1147
CseI GACGC 1 cut(s) 1208
Csp6I GTAC 1 cut(s) 616
CviAII CATG 8 cut(s) 274, 303, 422, 874, 883, 1141, 1186, 1282
CviQI GTAC 1 cut(s) 616
DdeI CTNAG 1 cut(s) 156
DpnI GATC 5 cut(s) 402, 1073, 1115, 1160, 1280
DpnII GATC 5 cut(s) 400, 1071, 1113, 1158, 1278
EaeI YGGCCR 3 cut(s) 225, 305, 876
Eam1104I CTCTTC 3 cut(s) 125, 724, 1094
EarI CTCTTC 3 cut(s) 125, 724, 1094
EciI GGCGGA 4 cut(s) 1259, 1313, 1358, 1379
Eco130I CCWWGG 5 cut(s) 44, 602, 873, 900, 1404
Eco147I AGGCCT 1 cut(s) 1403
Eco31I GGTCTC 2 cut(s) 641, 1328
Eco32I GATATC 2 cut(s) 300, 1305
Eco47I GGWCC 3 cut(s) 287, 607, 904
Eco57I CTGAAG 1 cut(s) 263
Eco72I CACGTG 1 cut(s) 313
Eco81I CCTNAGG 1 cut(s) 156
EcoNI CCTNNNNNAGG 1 cut(s) 711
EcoO109I RGGNCCY 3 cut(s) 287, 607, 904
EcoRII CCWGG 5 cut(s) 289, 689, 748, 1116, 1338
EcoRV GATATC 2 cut(s) 300, 1305
EcoT14I CCWWGG 5 cut(s) 44, 602, 873, 900, 1404
ErhI CCWWGG 5 cut(s) 44, 602, 873, 900, 1404
FaeI CATG 8 cut(s) 277, 306, 425, 877, 886, 1144, 1189, 1285
FalI AAGNNNNNCTT 2 cut(s) 721, 753
FaqI GGGAC 5 cut(s) 300, 593, 890, 938, 1042
FatI CATG 8 cut(s) 273, 302, 421, 873, 882, 1140, 1185, 1281
FauI CCCGC 2 cut(s) 89, 240
FblI GTMKAC 1 cut(s) 573
FokI GGATG 5 cut(s) 8, 40, 425, 575, 956
FspBI CTAG 5 cut(s) 45, 198, 407, 527, 726
GlaI GCGC 7 cut(s) 13, 77, 150, 1050, 1086, 1196, 1314
GsaI CCCAGC 1 cut(s) 1223
GsuI CTGGAG 3 cut(s) 673, 1280, 1436
HaeII RGCGCY 4 cut(s) 79, 152, 1088, 1316
HapII CCGG 1 cut(s) 651
HgaI GACGC 1 cut(s) 1208
HhaI GCGC 7 cut(s) 14, 78, 151, 1051, 1087, 1197, 1315
Hin1I GRCGYC 1 cut(s) 1200
Hin1II CATG 8 cut(s) 277, 306, 425, 877, 886, 1144, 1189, 1285
Hin6I GCGC 7 cut(s) 12, 76, 149, 1049, 1085, 1195, 1313
HinP1I GCGC 7 cut(s) 12, 76, 149, 1049, 1085, 1195, 1313
HinfI GANTC 1 cut(s) 598
HpaII CCGG 1 cut(s) 651
HphI GGTGA 5 cut(s) 696, 973, 1033, 1261, 1366
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 5 cut(s) 64, 238, 348, 377, 660
Hpy188III TCNNGA 5 cut(s) 158, 442, 726, 1075, 1282
Hpy8I GTNNAC 1 cut(s) 574
Hpy99I CGWCG 5 cut(s) 64, 119, 1049, 1202, 1243
HpyCH4III ACNGT 4 cut(s) 232, 644, 702, 1045
HpyCH4IV ACGT 2 cut(s) 312, 1238
HpyCH4V TGCA 1 cut(s) 1396
HpyF10VI GCNNNNNNNGC 7 cut(s) 73, 97, 169, 257, 819, 1264, 1295
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 2 cut(s) 312, 1238
Hsp92I GRCGYC 1 cut(s) 1200
Hsp92II CATG 8 cut(s) 277, 306, 425, 877, 886, 1144, 1189, 1285
HspAI GCGC 7 cut(s) 12, 76, 149, 1049, 1085, 1195, 1313
KflI GGGWCCC 1 cut(s) 607
Kzo9I GATC 5 cut(s) 400, 1071, 1113, 1158, 1278
LguI GCTCTTC 2 cut(s) 125, 1094
LmnI GCTCC 7 cut(s) 64, 83, 156, 160, 1224, 1264, 1420
Lsp1109I GCAGC 2 cut(s) 90, 1267
LweI GCATC 1 cut(s) 396
MaeI CTAG 5 cut(s) 45, 198, 407, 527, 726
MaeII ACGT 2 cut(s) 312, 1238
MaeIII GTNAC 3 cut(s) 269, 521, 702
MalI GATC 5 cut(s) 402, 1073, 1115, 1160, 1280
MbiI CCGCTC 4 cut(s) 67, 84, 166, 1174
MboI GATC 5 cut(s) 400, 1071, 1113, 1158, 1278
MboII GAAGA 9 cut(s) 142, 524, 545, 729, 741, 796, 1081, 1339, 1387
MflI RGATCY 1 cut(s) 1158
MlsI TGGCCA 2 cut(s) 307, 878
MluCI AATT 1 cut(s) 185
MluNI TGGCCA 2 cut(s) 307, 878
MmeI TCCRAC 1 cut(s) 42
Mox20I TGGCCA 2 cut(s) 307, 878
MroXI GAANNNNTTC 3 cut(s) 134, 733, 788
MscI TGGCCA 2 cut(s) 307, 878
MslI CAYNNNNRTG 2 cut(s) 313, 887
Msp20I TGGCCA 2 cut(s) 307, 878
MspA1I CMGCKG 2 cut(s) 103, 1258
MspI CCGG 1 cut(s) 651
MspR9I CCNGG 6 cut(s) 291, 652, 691, 750, 1118, 1340
MvaI CCWGG 5 cut(s) 291, 691, 750, 1118, 1340
MvnI CGCG 5 cut(s) 14, 127, 813, 1049, 1197
MwoI GCNNNNNNNGC 7 cut(s) 73, 97, 169, 257, 819, 1264, 1295
NciI CCSGG 1 cut(s) 652
NcoI CCATGG 1 cut(s) 873
NdeII GATC 5 cut(s) 400, 1071, 1113, 1158, 1278
NlaIII CATG 8 cut(s) 277, 306, 425, 877, 886, 1144, 1189, 1285
NlaIV GGNNCC 7 cut(s) 162, 216, 288, 608, 609, 906, 924
NmeAIII GCCGAG 4 cut(s) 52, 125, 896, 1093
NmuCI GTSAC 3 cut(s) 269, 521, 702
NspI RCATGY 2 cut(s) 277, 425
OliI CACNNNNGTG 1 cut(s) 313
PagI TCATGA 1 cut(s) 1281
PceI AGGCCT 1 cut(s) 1403
PciSI GCTCTTC 2 cut(s) 125, 1094
PcsI WCGNNNNNNNCGW 2 cut(s) 363, 826
PdmI GAANNNNTTC 3 cut(s) 134, 733, 788
PfeI GAWTC 1 cut(s) 598
PmaCI CACGTG 1 cut(s) 313
PmlI CACGTG 1 cut(s) 313
Ppu21I YACGTR 1 cut(s) 313
PpuMI RGGWCCY 3 cut(s) 287, 607, 904
Psp5II RGGWCCY 3 cut(s) 287, 607, 904
Psp6I CCWGG 5 cut(s) 289, 689, 748, 1116, 1338
PspCI CACGTG 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 1219
PspGI CCWGG 5 cut(s) 289, 689, 748, 1116, 1338
PspN4I GGNNCC 7 cut(s) 162, 216, 288, 608, 609, 906, 924
PspPI GGNCC 6 cut(s) 287, 473, 607, 904, 922, 1147
PspPPI RGGWCCY 3 cut(s) 287, 607, 904
PsuI RGATCY 1 cut(s) 1158
PvuII CAGCTG 1 cut(s) 1258
RsaI GTAC 1 cut(s) 617
RsaNI GTAC 1 cut(s) 616
RseI CAYNNNNRTG 2 cut(s) 313, 887
SapI GCTCTTC 2 cut(s) 125, 1094
Sau3AI GATC 5 cut(s) 400, 1071, 1113, 1158, 1278
Sau96I GGNCC 6 cut(s) 287, 473, 607, 904, 922, 1147
ScrFI CCNGG 6 cut(s) 291, 652, 691, 750, 1118, 1340
SfaNI GCATC 1 cut(s) 396
SfcI CTRYAG 1 cut(s) 708
SinI GGWCC 3 cut(s) 287, 607, 904
SmiMI CAYNNNNRTG 2 cut(s) 313, 887
SmlI CTYRAG 2 cut(s) 167, 856
SmoI CTYRAG 2 cut(s) 167, 856
Sse9I AATT 1 cut(s) 185
SseBI AGGCCT 1 cut(s) 1403
SspMI CTAG 5 cut(s) 45, 198, 407, 527, 726
StuI AGGCCT 1 cut(s) 1403
StyD4I CCNGG 6 cut(s) 289, 650, 689, 748, 1116, 1338
StyI CCWWGG 5 cut(s) 44, 602, 873, 900, 1404
TaaI ACNGT 4 cut(s) 232, 644, 702, 1045
TaiI ACGT 2 cut(s) 315, 1241
TaqI TCGA 7 cut(s) 114, 204, 829, 1074, 1092, 1098, 1152
TasI AATT 1 cut(s) 185
TfiI GAWTC 1 cut(s) 598
TscAI CASTG 4 cut(s) 235, 649, 705, 766
TseFI GTSAC 3 cut(s) 269, 521, 702
TseI GCWGC 2 cut(s) 103, 1255
Tsp45I GTSAC 3 cut(s) 269, 521, 702
TspDTI ATGAA 3 cut(s) 639, 1174, 1340
TspGWI ACGGA 2 cut(s) 166, 295
TspRI CASTG 4 cut(s) 235, 649, 705, 766
VpaK11BI GGWCC 3 cut(s) 287, 607, 904
XagI CCTNNNNNAGG 1 cut(s) 711
XbaI TCTAGA 1 cut(s) 725
XceI RCATGY 2 cut(s) 277, 425
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XmaJI CCTAGG 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 573
XmnI GAANNNNTTC 3 cut(s) 134, 733, 788
XspI CTAG 5 cut(s) 45, 198, 407, 527, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.