Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009777

Physical Location & Seq

Genomic Coordinates Forward (+)

10623475 .. 10628018

Gene Structure 4544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00170190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCTTATAGCGCGTTGAACATCCAAGATGACGATTTTGCCCCTAGGTTATCATCCTCGTCGGAGCGGCCTCGGCGCTCCCGCTCTATGCCCTTCTCGCCGCTGCTCATCATCGACGGCCTTTCGCGGAAGAAGAGCTTCTCCTACTCGGCGCTCCCTCAGGAGCCGCTCAAGCTCTCCGTTCTCAAATTGGACGGCTCTAGCTTCGATATTGAGGTTCCCAAGACGGCCACTGTTTCAGAACTGAAGCGGGCGGTGGAGGCGGTTTTCAGTCACATGCCACGGAAGGGACCTGGAAAGATATCATGGCCACACGTGTGGGGGCATTTCTGCTTGGGATATGCTGGTCAGAAGCTACTCGTTGAAACGGACCATATCAGAGACTATGGCATCAAAGACGGCGATCAGCTAGATTTTGTCCGGCATGTTTCAATCAGCTACATCCTGACAAGGAAGCAATCAAAAAGGCTCTCTGGCCCAAAACATCACAGGAGGTCATTTAGTTTTGACGAGGAAGAACAGAGTGACCTAGAGGAAGAACAGAAGGACAAAGGAGTAGAACAGGATGACGAGGTATACTACAATAGTGATGACATTGAGAATCCAAGGGTCCCAGAGTATGATGATAAACTTTGTGTTGAACACAGTGAGACCGGGTTTCCGAGCATACTGGGAGAGTGGTTTCCATACTCGAGGTTATCACTGTCCCCTGTAGGAGGAGGAAAATCTAGAAGAGGTTCTTCTTGTTCCCCAGGCATAGCCACTGGGTTGTTGTTTGGCTTTAGGAAGATTTTCGGGCTTTGCTTTGAGAAACGCGAGAAACGCTATACTCGAAGGGATATATGGAGAATAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_B ubiquitin

Protein Analysis

285

Amino Acids

32.6

Weight (kDa)

7.69

Isoelectric Point (pI)

67.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_4	PF18036	57 - 143	9.4e-26	Ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32270 AT5G25340
fragaria_vesca	FvH4_2g28951
malus_domestica	MD08G1155200.v1.1 MD15G1126000.v1.1
prunus_persica	Prupe.1G481900_v2.0.a1
pyrus_communis	pycom08g12770 pycom15g11380
rosa_chinensis	RchiOBHm_Chr6g0297801
rosa_laevigata	RLG00000011561
rosa_multiflora	Rmu_sc0002674.1_g000017 Rmu_sc0003137.1_g000001 Rmu_sc0021574.1_g000002
rosa_roxburghii	Rroxscaffold_7G00170190 Rroxscaffold_7G00179040
rosa_rugosa	Rorug06G0275500
rosa_samantha	Rh6AG386200 Rh6BG394800 Rh6CG400500 Rh6DG386900
rosa_wichuraiana	Rw6G033660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	67, 84, 169
AccI	GTMKAC	1 cut(s)	576
AccII	CGCG	3 cut(s)	14, 127, 816
AciI	CCGC	8 cut(s)	67, 82, 101, 127, 167, 250, 254, 263
AcoI	YGGCCR	2 cut(s)	228, 308
AcuI	CTGAAG	1 cut(s)	266
AcvI	CACGTG	1 cut(s)	316
AfiI	CCNNNNNNNGG	2 cut(s)	287, 716
AflIII	ACRYGT	2 cut(s)	313, 315
AgsI	TTSAA	4 cut(s)	19, 365, 432, 641
AjnI	CCWGG	2 cut(s)	292, 751
AleI	CACNNNNGTG	1 cut(s)	316
AluBI	AGCT	6 cut(s)	138, 175, 204, 355, 409, 438
AluI	AGCT	6 cut(s)	138, 175, 204, 355, 409, 438
Alw26I	GTCTC	2 cut(s)	375, 644
Ama87I	CYCGRG	1 cut(s)	691
AoxI	GGCC	5 cut(s)	68, 118, 228, 308, 475
ApeKI	GCWGC	1 cut(s)	103
Asp700I	GAANNNNTTC	3 cut(s)	137, 736, 791
AspA2I	CCTAGG	1 cut(s)	44
AspLEI	GCGC	3 cut(s)	14, 78, 154
AspS9I	GGNCC	4 cut(s)	290, 370, 476, 610
AsuC2I	CCSGG	1 cut(s)	655
AvaI	CYCGRG	1 cut(s)	691
AvaII	GGWCC	3 cut(s)	290, 370, 610
AvrII	CCTAGG	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	159
BalI	TGGCCA	1 cut(s)	310
BbrPI	CACGTG	1 cut(s)	316
BbvI	GCAGC	1 cut(s)	90
BceAI	ACGGC	4 cut(s)	133, 211, 243, 415
BciT130I	CCWGG	2 cut(s)	294, 753
BcnI	CCSGG	1 cut(s)	655
BcoDI	GTCTC	2 cut(s)	375, 644
BfaI	CTAG	5 cut(s)	45, 201, 410, 530, 729
BfmI	CTRYAG	1 cut(s)	711
BfoI	RGCGCY	2 cut(s)	79, 155
BisI	GCNGC	4 cut(s)	68, 101, 104, 167
BlnI	CCTAGG	1 cut(s)	44
BlsI	GCNGC	4 cut(s)	69, 102, 105, 168
Bme1390I	CCNGG	3 cut(s)	294, 655, 753
Bme18I	GGWCC	3 cut(s)	290, 370, 610
BmeT110I	CYCGRG	1 cut(s)	691
BmgT120I	GGNCC	4 cut(s)	290, 370, 476, 610
BmiI	GGNNCC	5 cut(s)	165, 219, 291, 611, 612
BmrFI	CCNGG	3 cut(s)	294, 655, 753
BmrI	ACTGGG	2 cut(s)	680, 774
BmsI	GCATC	1 cut(s)	399
BmuI	ACTGGG	2 cut(s)	680, 774
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	655
BsaAI	YACGTR	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	5 cut(s)	44, 71, 281, 605, 751
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 716
Bse1I	ACTGG	2 cut(s)	675, 769
Bse21I	CCTNAGG	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	294, 753
BseDI	CCNNGG	5 cut(s)	44, 71, 281, 605, 751
BseGI	GGATG	4 cut(s)	21, 53, 441, 571
BseLI	CCNNNNNNNGG	2 cut(s)	287, 716
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	2 cut(s)	675, 769
BseRI	GAGGAG	1 cut(s)	732
BseXI	GCAGC	1 cut(s)	90
Bsh1236I	CGCG	3 cut(s)	14, 127, 816
BshFI	GGCC	5 cut(s)	70, 120, 230, 310, 477
BsiHKCI	CYCGRG	1 cut(s)	691
BsiSI	CCGG	2 cut(s)	421, 654
BslFI	GGGAC	3 cut(s)	303, 596, 691
BslI	CCNNNNNNNGG	2 cut(s)	287, 716
BsmAI	GTCTC	2 cut(s)	375, 644
BsmFI	GGGAC	3 cut(s)	303, 596, 691
BsnI	GGCC	5 cut(s)	70, 120, 230, 310, 477
Bso31I	GGTCTC	1 cut(s)	644
BsoBI	CYCGRG	1 cut(s)	691
Bsp143I	GATC	1 cut(s)	403
BspACI	CCGC	8 cut(s)	67, 82, 101, 127, 167, 250, 254, 263
BspANI	GGCC	5 cut(s)	70, 120, 230, 310, 477
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	3 cut(s)	14, 127, 816
BspLI	GGNNCC	5 cut(s)	165, 219, 291, 611, 612
BspQI	GCTCTTC	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	644
BsrBI	CCGCTC	3 cut(s)	67, 84, 169
BsrI	ACTGG	2 cut(s)	675, 769
BssECI	CCNNGG	5 cut(s)	44, 71, 281, 605, 751
BssMI	GATC	1 cut(s)	403
BssNAI	GTATAC	1 cut(s)	577
BssT1I	CCWWGG	2 cut(s)	44, 605
Bst1107I	GTATAC	1 cut(s)	577
Bst2UI	CCWGG	2 cut(s)	294, 753
Bst4CI	ACNGT	3 cut(s)	235, 647, 705
Bst6I	CTCTTC	2 cut(s)	128, 727
BstBAI	YACGTR	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	281
BstENI	CCTNNNNNAGG	1 cut(s)	714
BstF5I	GGATG	4 cut(s)	21, 53, 441, 571
BstFNI	CGCG	3 cut(s)	14, 127, 816
BstH2I	RGCGCY	2 cut(s)	79, 155
BstHHI	GCGC	3 cut(s)	14, 78, 154
BstKTI	GATC	1 cut(s)	406
BstMAI	GTCTC	2 cut(s)	375, 644
BstMBI	GATC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	5 cut(s)	73, 97, 172, 260, 822
BstNI	CCWGG	2 cut(s)	294, 753
BstNSI	RCATGY	2 cut(s)	280, 428
BstSCI	CCNGG	3 cut(s)	292, 653, 751
BstSFI	CTRYAG	1 cut(s)	711
BstUI	CGCG	3 cut(s)	14, 127, 816
BstV1I	GCAGC	1 cut(s)	90
BstXI	CCANNNNNNTGG	1 cut(s)	318
BstZ17I	GTATAC	1 cut(s)	577
Bsu36I	CCTNAGG	1 cut(s)	159
BsuRI	GGCC	5 cut(s)	70, 120, 230, 310, 477
BtgI	CCRYGG	1 cut(s)	281
BtsCI	GGATG	4 cut(s)	21, 53, 441, 571
BtsIMutI	CAGTG	4 cut(s)	231, 652, 701, 762
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	3 cut(s)	14, 78, 154
Cfr13I	GGNCC	4 cut(s)	290, 370, 476, 610
CviAII	CATG	3 cut(s)	277, 306, 425
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	1 cut(s)	405
DpnII	GATC	1 cut(s)	403
EaeI	YGGCCR	2 cut(s)	228, 308
Eam1104I	CTCTTC	2 cut(s)	128, 727
EarI	CTCTTC	2 cut(s)	128, 727
Eco130I	CCWWGG	2 cut(s)	44, 605
Eco31I	GGTCTC	1 cut(s)	644
Eco32I	GATATC	1 cut(s)	303
Eco47I	GGWCC	3 cut(s)	290, 370, 610
Eco57I	CTGAAG	1 cut(s)	266
Eco72I	CACGTG	1 cut(s)	316
Eco81I	CCTNAGG	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	691
EcoNI	CCTNNNNNAGG	1 cut(s)	714
EcoO109I	RGGNCCY	2 cut(s)	290, 610
EcoRII	CCWGG	2 cut(s)	292, 751
EcoRV	GATATC	1 cut(s)	303
EcoT14I	CCWWGG	2 cut(s)	44, 605
ErhI	CCWWGG	2 cut(s)	44, 605
FaeI	CATG	3 cut(s)	280, 309, 428
FalI	AAGNNNNNCTT	4 cut(s)	122, 154, 724, 756
FaqI	GGGAC	3 cut(s)	303, 596, 691
FatI	CATG	3 cut(s)	276, 305, 424
FauI	CCCGC	2 cut(s)	89, 243
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	4 cut(s)	68, 101, 104, 167
FokI	GGATG	4 cut(s)	8, 40, 428, 578
Fsp4HI	GCNGC	4 cut(s)	68, 101, 104, 167
FspBI	CTAG	5 cut(s)	45, 201, 410, 530, 729
GlaI	GCGC	3 cut(s)	13, 77, 153
GluI	GCNGC	4 cut(s)	68, 101, 104, 167
HaeII	RGCGCY	2 cut(s)	79, 155
HaeIII	GGCC	5 cut(s)	70, 120, 230, 310, 477
HapII	CCGG	2 cut(s)	421, 654
HhaI	GCGC	3 cut(s)	14, 78, 154
Hin1II	CATG	3 cut(s)	280, 309, 428
Hin6I	GCGC	3 cut(s)	12, 76, 152
HinP1I	GCGC	3 cut(s)	12, 76, 152
HinfI	GANTC	1 cut(s)	601
HpaII	CCGG	2 cut(s)	421, 654
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	5 cut(s)	64, 241, 351, 380, 663
Hpy188III	TCNNGA	3 cut(s)	161, 445, 729
Hpy8I	GTNNAC	1 cut(s)	577
Hpy99I	CGWCG	2 cut(s)	64, 119
HpyAV	CCTTC	4 cut(s)	103, 280, 538, 828
HpyCH4III	ACNGT	3 cut(s)	235, 647, 705
HpyCH4IV	ACGT	1 cut(s)	315
HpyF10VI	GCNNNNNNNGC	5 cut(s)	73, 97, 172, 260, 822
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	3 cut(s)	280, 309, 428
HspAI	GCGC	3 cut(s)	12, 76, 152
KflI	GGGWCCC	1 cut(s)	610
Kzo9I	GATC	1 cut(s)	403
LguI	GCTCTTC	1 cut(s)	128
LmnI	GCTCC	4 cut(s)	64, 83, 159, 163
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	5 cut(s)	45, 201, 410, 530, 729
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	272, 524
MalI	GATC	1 cut(s)	405
MbiI	CCGCTC	3 cut(s)	67, 84, 169
MboI	GATC	1 cut(s)	403
MboII	GAAGA	7 cut(s)	142, 145, 527, 548, 732, 744, 799
MlsI	TGGCCA	1 cut(s)	310
MluCI	AATT	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	42
Mox20I	TGGCCA	1 cut(s)	310
MroXI	GAANNNNTTC	3 cut(s)	137, 736, 791
MscI	TGGCCA	1 cut(s)	310
MslI	CAYNNNNRTG	1 cut(s)	316
Msp20I	TGGCCA	1 cut(s)	310
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	2 cut(s)	421, 654
MspR9I	CCNGG	3 cut(s)	294, 655, 753
MvaI	CCWGG	2 cut(s)	294, 753
MvnI	CGCG	3 cut(s)	14, 127, 816
MwoI	GCNNNNNNNGC	5 cut(s)	73, 97, 172, 260, 822
NciI	CCSGG	1 cut(s)	655
NdeII	GATC	1 cut(s)	403
NlaIII	CATG	3 cut(s)	280, 309, 428
NlaIV	GGNNCC	5 cut(s)	165, 219, 291, 611, 612
NmeAIII	GCCGAG	2 cut(s)	52, 128
NmuCI	GTSAC	2 cut(s)	272, 524
NspI	RCATGY	2 cut(s)	280, 428
OliI	CACNNNNGTG	1 cut(s)	316
PaeR7I	CTCGAG	1 cut(s)	691
PciSI	GCTCTTC	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	829
PdmI	GAANNNNTTC	3 cut(s)	137, 736, 791
PfeI	GAWTC	1 cut(s)	601
PkrI	GCNGC	4 cut(s)	69, 102, 105, 168
PmaCI	CACGTG	1 cut(s)	316
PmlI	CACGTG	1 cut(s)	316
Ppu21I	YACGTR	1 cut(s)	316
PpuMI	RGGWCCY	2 cut(s)	290, 610
Psp5II	RGGWCCY	2 cut(s)	290, 610
Psp6I	CCWGG	2 cut(s)	292, 751
PspCI	CACGTG	1 cut(s)	316
PspGI	CCWGG	2 cut(s)	292, 751
PspN4I	GGNNCC	5 cut(s)	165, 219, 291, 611, 612
PspPI	GGNCC	4 cut(s)	290, 370, 476, 610
PspPPI	RGGWCCY	2 cut(s)	290, 610
PspXI	VCTCGAGB	1 cut(s)	691
RseI	CAYNNNNRTG	1 cut(s)	316
SapI	GCTCTTC	1 cut(s)	128
SatI	GCNGC	4 cut(s)	68, 101, 104, 167
Sau3AI	GATC	1 cut(s)	403
Sau96I	GGNCC	4 cut(s)	290, 370, 476, 610
ScrFI	CCNGG	3 cut(s)	294, 655, 753
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	1 cut(s)	711
Sfr274I	CTCGAG	1 cut(s)	691
SinI	GGWCC	3 cut(s)	290, 370, 610
SlaI	CTCGAG	1 cut(s)	691
SmiMI	CAYNNNNRTG	1 cut(s)	316
SmlI	CTYRAG	2 cut(s)	170, 691
SmoI	CTYRAG	2 cut(s)	170, 691
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	8 cut(s)	67, 82, 101, 127, 167, 250, 254, 263
SspMI	CTAG	5 cut(s)	45, 201, 410, 530, 729
StyD4I	CCNGG	3 cut(s)	292, 653, 751
StyI	CCWWGG	2 cut(s)	44, 605
TaaI	ACNGT	3 cut(s)	235, 647, 705
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	4 cut(s)	114, 207, 692, 832
TasI	AATT	1 cut(s)	188
TauI	GCSGC	3 cut(s)	70, 103, 169
TfiI	GAWTC	1 cut(s)	601
TscAI	CASTG	4 cut(s)	238, 652, 708, 769
TseFI	GTSAC	2 cut(s)	272, 524
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	2 cut(s)	272, 524
TspGWI	ACGGA	3 cut(s)	169, 298, 383
TspRI	CASTG	4 cut(s)	238, 652, 708, 769
VpaK11BI	GGWCC	3 cut(s)	290, 370, 610
XagI	CCTNNNNNAGG	1 cut(s)	714
XbaI	TCTAGA	1 cut(s)	728
XceI	RCATGY	2 cut(s)	280, 428
XhoI	CTCGAG	1 cut(s)	691
XmaJI	CCTAGG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	576
XmnI	GAANNNNTTC	3 cut(s)	137, 736, 791
XspI	CTAG	5 cut(s)	45, 201, 410, 530, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.