Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008616

Physical Location & Seq

Genomic Coordinates Reverse (-)

46946340 .. 46953261

Gene Structure 6922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G576600.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAAGCTGCAAAGCCATTGATAAACGCTTTCAAAACAAAATCAAAGCAGGCCACGCTGCTTTGGCTTGAGGGCTTCAGAGAGGCCTGTTGCCTTCACCGTGTCTTCATCCTCTGCCACAGGTCGAGAAAGCTTTTGATACGTACAGGACAGTGTTTTCTATTGAATGGCTTCATTTTCTTAGGAAGTATAATTATCCTTAACTCAGTCATCGTCCCAGCTCTACACTGGATATTACCTGATAGGTGCCCAGAATTTTGTTCTCAAGAACTCTGCTCCTTTGGTGGTATTTTGAAATTTTATTCCTTCTTACGTCTTGGGCTCATACAACTCTTTTATGTAACTTGGTTCTACCCGTTGTATGTATTCAGCATTATCCTGAGCAACATCTGGTACAATGATATTGCTAAGTATGGATTTGCTGCAATGGGGAGATCTGGGCCAACCACATTGGATCCTGTCAGACAAAATGAGGCATTGGCCTTACAAATTGGAGCTGGTACGGAAAGACCTACTGGCCTGGGAGGGGTCATGATTGGAATAGGAGAGCAGGTGTACTCATTACTTCTTTTGAGCTGTTTCTTCCTAGAGGTATATGTGACAGGCTTTATACCGTATGCAGGGAAGGCACTAAATTTTCTACTTCTTTCCTGGATGTATGCCTATTACTGTTTTGAGTACAAATGGAATTTTTCTGAAGTTCGTCTGGACAAACGGCTGGACTTCTTTGAATCTAACTGGGCTTTTTTTGCTGGTTTTGGAAGCCCTTGTGTTCTTCCTGTTCTCTTTTTCTCGCCTCTTGTGAGCTACGGGTTTATGGCAATACTCTTTCCATTGTTTGTTTTGACAGCAACAGGTTCAGAGGCTGAGCAAGTTATTTCTTCTCAAAGAACAAAATGGGAAGTTGCTGGGTTTGGAAGGCTTCCAATATTTAATGCTGCAGATACTTTATCGAATCCCAGGAGCTGCTTCAGAAAAAGAAAGACAGCTAAGAAGCTTGGCGTGATGCTTACACAAGTTTTAAATAGATCATCAATTCCACCCAATTTGTACATAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0012505 GO:0016236 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0061919

KEGG Pathways

Metabolic & Signaling

ko04115 map04115

Pfam Domains

Protein Families

EI24

Protein Analysis

354

Amino Acids

40.06

Weight (kDa)

9.21

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06676 AT4G06676
fragaria_vesca	FvH4_5g28680 FvH4_5g28680
malus_domestica	MD08G1240100.v1.1 MD15G1432200.v1.1
prunus_persica	Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1
pyrus_communis	pycom15g38140
rosa_chinensis	RchiOBHm_Chr7g0220831
rosa_laevigata	RLG00000002199
rosa_multiflora	Rmu_ssc0000286.1_g000019
rosa_roxburghii	Rroxscaffold_1G00038510 Rroxscaffold_3G00239010
rosa_rugosa	Rorug07G0197100
rosa_samantha	Rh7AG337600 Rh7BG328600 Rh7CG355700 Rh7DG336800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	541
Acc36I	ACCTGC	1 cut(s)	541
AccB1I	GGYRCC	1 cut(s)	246
AclWI	GGATC	2 cut(s)	449, 462
AcsI	RAATTY	4 cut(s)	254, 296, 634, 688
AcuI	CTGAAG	3 cut(s)	61, 717, 955
AfaI	GTAC	6 cut(s)	145, 395, 502, 557, 680, 1052
AfiI	CCNNNNNNNGG	2 cut(s)	526, 620
AgsI	TTSAA	4 cut(s)	34, 166, 295, 731
AjnI	CCWGG	3 cut(s)	519, 650, 959
AluBI	AGCT	9 cut(s)	8, 133, 221, 497, 576, 807, 966, 989, 997
AluI	AGCT	9 cut(s)	8, 133, 221, 497, 576, 807, 966, 989, 997
AlwI	GGATC	2 cut(s)	449, 462
AlwNI	CAGNNNCTG	2 cut(s)	866, 966
AoxI	GGCC	5 cut(s)	51, 84, 440, 480, 517
ApeKI	GCWGC	5 cut(s)	8, 58, 422, 938, 966
ApoI	RAATTY	4 cut(s)	254, 296, 634, 688
Asp700I	GAANNNNTTC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	251
BamHI	GGATCC	1 cut(s)	454
BanI	GGYRCC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	97
BbvI	GCAGC	4 cut(s)	45, 409, 925, 953
BceAI	ACGGC	1 cut(s)	731
BciT130I	CCWGG	3 cut(s)	521, 652, 961
BfaI	CTAG	1 cut(s)	587
BfmI	CTRYAG	1 cut(s)	939
BfuAI	ACCTGC	1 cut(s)	541
BglII	AGATCT	1 cut(s)	434
BisI	GCNGC	5 cut(s)	9, 59, 423, 939, 967
BlpI	GCTNAGC	1 cut(s)	867
BlsI	GCNGC	5 cut(s)	10, 60, 424, 940, 968
Bme1390I	CCNGG	3 cut(s)	521, 652, 961
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	2 cut(s)	248, 456
BmrFI	CCNGG	3 cut(s)	521, 652, 961
BmrI	ACTGGG	1 cut(s)	748
BmsI	GCATC	1 cut(s)	996
BmuI	ACTGGG	1 cut(s)	748
BpiI	GAAGAC	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	380
Bpu1102I	GCTNAGC	1 cut(s)	867
BpuEI	CTTGAG	2 cut(s)	89, 249
BsaAI	YACGTR	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	520, 959
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 620
Bse1I	ACTGG	3 cut(s)	233, 520, 743
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	3 cut(s)	521, 652, 961
BseDI	CCNNGG	2 cut(s)	520, 959
BseGI	GGATG	2 cut(s)	108, 660
BseLI	CCNNNNNNNGG	2 cut(s)	526, 620
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	3 cut(s)	219, 371, 858
BseNI	ACTGG	3 cut(s)	233, 520, 743
BseSI	GKGCMC	1 cut(s)	251
BseXI	GCAGC	4 cut(s)	45, 409, 925, 953
BseYI	CCCAGC	2 cut(s)	217, 908
BshFI	GGCC	5 cut(s)	53, 86, 442, 482, 519
BshNI	GGYRCC	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	526, 620
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	5 cut(s)	53, 86, 442, 482, 519
Bsp1286I	GDGCHC	2 cut(s)	251, 324
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp143I	GATC	3 cut(s)	434, 454, 1028
Bsp1720I	GCTNAGC	1 cut(s)	867
BspANI	GGCC	5 cut(s)	53, 86, 442, 482, 519
BspCNI	CTCAG	3 cut(s)	218, 372, 859
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	2 cut(s)	248, 456
BspMAI	CTGCAG	1 cut(s)	943
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	2 cut(s)	449, 462
BspT107I	GGYRCC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	432
BsrGI	TGTACA	1 cut(s)	1050
BsrI	ACTGG	3 cut(s)	233, 520, 743
BssECI	CCNNGG	2 cut(s)	520, 959
BssMI	GATC	3 cut(s)	434, 454, 1028
Bst2UI	CCWGG	3 cut(s)	521, 652, 961
Bst4CI	ACNGT	4 cut(s)	101, 153, 615, 671
BstAUI	TGTACA	1 cut(s)	1050
BstBAI	YACGTR	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	6 cut(s)	181, 205, 380, 408, 867, 990
BstF5I	GGATG	2 cut(s)	108, 660
BstKTI	GATC	3 cut(s)	437, 457, 1031
BstMBI	GATC	3 cut(s)	434, 454, 1028
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 64, 626, 749
BstNI	CCWGG	3 cut(s)	521, 652, 961
BstSCI	CCNGG	3 cut(s)	519, 650, 959
BstSFI	CTRYAG	1 cut(s)	939
BstSLI	GKGCMC	1 cut(s)	251
BstSNI	TACGTA	1 cut(s)	143
BstV1I	GCAGC	4 cut(s)	45, 409, 925, 953
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	2 cut(s)	434, 454
BstYI	RGATCY	2 cut(s)	434, 454
BsuRI	GGCC	5 cut(s)	53, 86, 442, 482, 519
BtsCI	GGATG	2 cut(s)	108, 660
BtsIMutI	CAGTG	2 cut(s)	158, 226
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	1 cut(s)	51
CaiI	CAGNNNCTG	2 cut(s)	866, 966
CciI	TCATGA	1 cut(s)	531
Cfr13I	GGNCC	1 cut(s)	440
Csp6I	GTAC	6 cut(s)	144, 394, 501, 556, 679, 1051
CspCI	CAANNNNNGTGG	1 cut(s)	1029
CviAII	CATG	1 cut(s)	532
CviQI	GTAC	6 cut(s)	144, 394, 501, 556, 679, 1051
DdeI	CTNAG	6 cut(s)	181, 205, 380, 408, 867, 990
DpnI	GATC	3 cut(s)	436, 456, 1030
DpnII	GATC	3 cut(s)	434, 454, 1028
DraI	TTTAAA	1 cut(s)	1023
Eco105I	TACGTA	1 cut(s)	143
Eco147I	AGGCCT	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	324
Eco57I	CTGAAG	3 cut(s)	61, 717, 955
EcoRII	CCWGG	3 cut(s)	519, 650, 959
EcoT38I	GRGCYC	1 cut(s)	324
FaeI	CATG	1 cut(s)	535
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	1 cut(s)	531
Fnu4HI	GCNGC	5 cut(s)	9, 59, 423, 939, 967
FokI	GGATG	2 cut(s)	95, 667
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	5 cut(s)	9, 59, 423, 939, 967
FspBI	CTAG	1 cut(s)	587
GluI	GCNGC	5 cut(s)	9, 59, 423, 939, 967
GsaI	CCCAGC	2 cut(s)	221, 912
HaeIII	GGCC	5 cut(s)	53, 86, 442, 482, 519
Hin1II	CATG	1 cut(s)	535
HindIII	AAGCTT	2 cut(s)	131, 995
HinfI	GANTC	2 cut(s)	731, 955
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	5 cut(s)	80, 464, 697, 862, 974
Hpy188III	TCNNGA	5 cut(s)	126, 266, 379, 532, 707
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	4 cut(s)	104, 316, 619, 912
HpyCH4III	ACNGT	4 cut(s)	101, 153, 615, 671
HpyCH4IV	ACGT	2 cut(s)	142, 313
HpyCH4V	TGCA	4 cut(s)	11, 425, 620, 941
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 64, 626, 749
HpyF3I	CTNAG	6 cut(s)	181, 205, 380, 408, 867, 990
HpySE526I	ACGT	2 cut(s)	142, 313
Hsp92II	CATG	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	434, 454, 1028
LmnI	GCTCC	3 cut(s)	281, 494, 963
Lsp1109I	GCAGC	4 cut(s)	45, 409, 925, 953
LweI	GCATC	1 cut(s)	996
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	2 cut(s)	142, 313
MaeIII	GTNAC	2 cut(s)	340, 598
MalI	GATC	3 cut(s)	436, 456, 1030
MboI	GATC	3 cut(s)	434, 454, 1028
MboII	GAAGA	4 cut(s)	97, 574, 767, 873
MflI	RGATCY	2 cut(s)	434, 454
MhlI	GDGCHC	2 cut(s)	251, 324
MluCI	AATT	9 cut(s)	192, 254, 296, 489, 634, 688, 1035, 1045, 1056
MnlI	CCTC	8 cut(s)	64, 76, 122, 466, 518, 583, 807, 856
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	4 cut(s)	201, 933, 1022, 1060
MspR9I	CCNGG	3 cut(s)	521, 652, 961
MvaI	CCWGG	3 cut(s)	521, 652, 961
MwoI	GCNNNNNNNGC	4 cut(s)	55, 64, 626, 749
NdeII	GATC	3 cut(s)	434, 454, 1028
NlaIII	CATG	1 cut(s)	535
NlaIV	GGNNCC	2 cut(s)	248, 456
NmuCI	GTSAC	1 cut(s)	598
PagI	TCATGA	1 cut(s)	531
PaqCI	CACCTGC	1 cut(s)	541
PceI	AGGCCT	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	731, 955
PfoI	TCCNGGA	1 cut(s)	650
PkrI	GCNGC	5 cut(s)	10, 60, 424, 940, 968
Ppu21I	YACGTR	1 cut(s)	143
Psp6I	CCWGG	3 cut(s)	519, 650, 959
PspFI	CCCAGC	2 cut(s)	217, 908
PspGI	CCWGG	3 cut(s)	519, 650, 959
PspN4I	GGNNCC	2 cut(s)	248, 456
PspPI	GGNCC	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	943
PstNI	CAGNNNCTG	2 cut(s)	866, 966
PsuI	RGATCY	2 cut(s)	434, 454
RsaI	GTAC	6 cut(s)	145, 395, 502, 557, 680, 1052
RsaNI	GTAC	6 cut(s)	144, 394, 501, 556, 679, 1051
SaqAI	TTAA	4 cut(s)	201, 933, 1022, 1060
SatI	GCNGC	5 cut(s)	9, 59, 423, 939, 967
Sau3AI	GATC	3 cut(s)	434, 454, 1028
Sau96I	GGNCC	1 cut(s)	440
ScrFI	CCNGG	3 cut(s)	521, 652, 961
SduI	GDGCHC	2 cut(s)	251, 324
SfaNI	GCATC	1 cut(s)	996
SfcI	CTRYAG	1 cut(s)	939
SmlI	CTYRAG	2 cut(s)	68, 264
SmoI	CTYRAG	2 cut(s)	68, 264
SnaBI	TACGTA	1 cut(s)	143
Sse9I	AATT	9 cut(s)	192, 254, 296, 489, 634, 688, 1035, 1045, 1056
SseBI	AGGCCT	1 cut(s)	86
SspI	AATATT	1 cut(s)	930
SspMI	CTAG	1 cut(s)	587
StuI	AGGCCT	1 cut(s)	86
StyD4I	CCNGG	3 cut(s)	519, 650, 959
TaaI	ACNGT	4 cut(s)	101, 153, 615, 671
TaiI	ACGT	2 cut(s)	145, 316
TaqI	TCGA	2 cut(s)	125, 953
TasI	AATT	9 cut(s)	192, 254, 296, 489, 634, 688, 1035, 1045, 1056
TatI	WGTACW	3 cut(s)	555, 678, 1050
TfiI	GAWTC	2 cut(s)	731, 955
Tru1I	TTAA	4 cut(s)	201, 933, 1022, 1060
Tru9I	TTAA	4 cut(s)	201, 933, 1022, 1060
TscAI	CASTG	2 cut(s)	158, 233
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	5 cut(s)	8, 58, 422, 938, 966
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	2 cut(s)	97, 163
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	2 cut(s)	158, 233
XapI	RAATTY	4 cut(s)	254, 296, 634, 688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.