Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008616

Physical Location & Seq

Genomic Coordinates Reverse (-)

42434340 .. 42443107

Gene Structure 8768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG337600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTGTCCAGAATCTAGTTCTCAAGAATTCTGCTCATTTGCTGTCATTTGGGAATTTTATTCCTTCTTACGTCATGGACTCATACAAATCTTTTATGTAACTTGGTTATACCCATTATATGTATTCAGCTTTATCCTGAGCAACATCTGGTACAATGATATTGCCAAGTATGGATTTTCTGCAATGGGGAGACCTGTGATTAACAAATTGGATCCCCTCAGGCAAAGTGATGCATCAACCTTACAAAATGCAGCTGGCATGGAAAGACCAACTGACCTAGGACGGGTCATGATTGGAATAGGAGAGCAGGTTTATTCAGTGCTTCTTTTGAGCTGTTTCTTCTTAGAGGTATATGTGACAGGATTTATACCATATGTGGGCAAGGCATTAAATTTTCTGCTTCTTTCCTGGATGTATGCCTACTACTGTTTTGAGTACAAATGGAATTTTTCTGAAATCGGTCTAGACAAAAGGCTGGACTTCTTTGAATCTAACTGGGCATTTTTTGCTGGTTTTGGAAGCCCATGCGTTGTACCTCTTTTCTTTTTCTCACCTCTTGTGAGCTATGGGTGTATGGCTATACTCTTTCCGTTGTTTGTTTTGACAGCTACAGGTTCAGAAGCTGAGCAACTTATTTCTTCTCGAAGAACAAGCTGGGGAGGCGCATGTTTCGGACGGCTTCAAATATTTAAGACTGCAGATAGTTTGTCGATGTGGTTGTTGTCGCTATTTCCGGTACAATCAAAGAGACGTCTGCAAGAACAGAAATATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0012505 GO:0016236 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0061919

KEGG Pathways

Metabolic & Signaling

ko04115 map04115

Pfam Domains

Protein Families

EI24

Protein Analysis

258

Amino Acids

29.75

Weight (kDa)

6.58

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EI24	PF07264	22 - 197	1.1e-22	Sulfate transporter CysZ/Etoposide-induced protein 2.4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06676 AT4G06676
fragaria_vesca	FvH4_5g28680 FvH4_5g28680
malus_domestica	MD08G1240100.v1.1 MD15G1432200.v1.1
prunus_persica	Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1
pyrus_communis	pycom15g38140
rosa_chinensis	RchiOBHm_Chr7g0220831
rosa_laevigata	RLG00000002199
rosa_multiflora	Rmu_ssc0000286.1_g000019
rosa_roxburghii	Rroxscaffold_1G00038510 Rroxscaffold_3G00239010
rosa_rugosa	Rorug07G0197100
rosa_samantha	Rh7AG337600 Rh7BG328600 Rh7CG355700 Rh7DG336800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	754
Acc36I	ACCTGC	1 cut(s)	298
AclWI	GGATC	2 cut(s)	206, 219
AcsI	RAATTY	4 cut(s)	26, 53, 391, 445
AcyI	GRCGYC	1 cut(s)	751
AfaI	GTAC	4 cut(s)	152, 437, 534, 738
AfiI	CCNNNNNNNGG	2 cut(s)	283, 377
AgsI	TTSAA	2 cut(s)	488, 683
AjnI	CCWGG	1 cut(s)	407
AluBI	AGCT	7 cut(s)	129, 254, 333, 564, 608, 623, 654
AluI	AGCT	7 cut(s)	129, 254, 333, 564, 608, 623, 654
Alw26I	GTCTC	2 cut(s)	184, 742
AlwI	GGATC	2 cut(s)	206, 219
AlwNI	CAGNNNCTG	1 cut(s)	623
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	4 cut(s)	26, 53, 391, 445
AspA2I	CCTAGG	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	665
AsuHPI	GGTGA	1 cut(s)	543
AvrII	CCTAGG	1 cut(s)	277
AxyI	CCTNAGG	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	263
BceAI	ACGGC	1 cut(s)	692
BciT130I	CCWGG	1 cut(s)	409
BcoDI	GTCTC	2 cut(s)	184, 742
BfaI	CTAG	3 cut(s)	15, 278, 464
BfmI	CTRYAG	2 cut(s)	609, 696
BfuAI	ACCTGC	1 cut(s)	298
BisI	GCNGC	1 cut(s)	252
BlnI	CCTAGG	1 cut(s)	277
BlpI	GCTNAGC	1 cut(s)	624
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	409
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	409
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	2 cut(s)	220, 242
BmuI	ACTGGG	1 cut(s)	505
Bpu10I	CCTNAGC	1 cut(s)	137
Bpu1102I	GCTNAGC	1 cut(s)	624
BpuEI	CTTGAG	1 cut(s)	6
BsaHI	GRCGYC	1 cut(s)	751
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	733
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 377
Bse1I	ACTGG	1 cut(s)	500
Bse21I	CCTNAGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	2 cut(s)	283, 377
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	128, 232, 615
BseNI	ACTGG	1 cut(s)	500
BseXI	GCAGC	1 cut(s)	263
BseYI	CCCAGC	1 cut(s)	654
BsiSI	CCGG	1 cut(s)	734
BslI	CCNNNNNNNGG	2 cut(s)	283, 377
BsmAI	GTCTC	2 cut(s)	184, 742
BsmBI	CGTCTC	1 cut(s)	742
Bso31I	GGTCTC	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	211
Bsp1720I	GCTNAGC	1 cut(s)	624
BspCNI	CTCAG	3 cut(s)	129, 231, 616
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	700
BspMI	ACCTGC	1 cut(s)	298
BspPI	GGATC	2 cut(s)	206, 219
BspTNI	GGTCTC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	500
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	1 cut(s)	211
BssNI	GRCGYC	1 cut(s)	751
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	409
Bst4CI	ACNGT	1 cut(s)	428
BstACI	GRCGYC	1 cut(s)	751
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	4 cut(s)	137, 218, 343, 624
BstF5I	GGATG	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	665
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	2 cut(s)	184, 742
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	506, 660
BstNI	CCWGG	1 cut(s)	409
BstNSI	RCATGY	1 cut(s)	669
BstSCI	CCNGG	1 cut(s)	407
BstSFI	CTRYAG	2 cut(s)	609, 696
BstV1I	GCAGC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	298
Cac8I	GCNNGC	1 cut(s)	256
CaiI	CAGNNNCTG	1 cut(s)	623
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	665
Csp6I	GTAC	4 cut(s)	151, 436, 533, 737
CviAII	CATG	5 cut(s)	74, 259, 289, 525, 666
CviQI	GTAC	4 cut(s)	151, 436, 533, 737
DdeI	CTNAG	4 cut(s)	137, 218, 343, 624
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	184
Eco81I	CCTNAGG	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	277
Esp3I	CGTCTC	1 cut(s)	742
FaeI	CATG	5 cut(s)	77, 262, 292, 528, 669
FatI	CATG	5 cut(s)	73, 258, 288, 524, 665
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	1 cut(s)	424
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	3 cut(s)	15, 278, 464
GlaI	GCGC	1 cut(s)	664
GluI	GCNGC	1 cut(s)	252
GsaI	CCCAGC	1 cut(s)	658
HapII	CCGG	1 cut(s)	734
HhaI	GCGC	1 cut(s)	665
Hin1I	GRCGYC	1 cut(s)	751
Hin1II	CATG	5 cut(s)	77, 262, 292, 528, 669
Hin6I	GCGC	1 cut(s)	663
HinP1I	GCGC	1 cut(s)	663
HinfI	GANTC	3 cut(s)	11, 78, 488
HpaII	CCGG	1 cut(s)	734
HphI	GGTGA	1 cut(s)	543
Hpy188I	TCNGA	3 cut(s)	454, 619, 674
Hpy188III	TCNNGA	6 cut(s)	8, 23, 136, 289, 464, 642
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4IV	ACGT	2 cut(s)	70, 751
HpyCH4V	TGCA	5 cut(s)	182, 233, 251, 698, 757
HpyF10VI	GCNNNNNNNGC	2 cut(s)	506, 660
HpyF3I	CTNAG	4 cut(s)	137, 218, 343, 624
HpySE526I	ACGT	2 cut(s)	70, 751
Hsp92I	GRCGYC	1 cut(s)	751
Hsp92II	CATG	5 cut(s)	77, 262, 292, 528, 669
HspAI	GCGC	1 cut(s)	663
Kzo9I	GATC	1 cut(s)	211
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	2 cut(s)	220, 242
MaeI	CTAG	3 cut(s)	15, 278, 464
MaeII	ACGT	2 cut(s)	70, 751
MaeIII	GTNAC	2 cut(s)	97, 355
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	3 cut(s)	331, 630, 657
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	5 cut(s)	26, 53, 206, 391, 445
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	5 cut(s)	227, 340, 546, 564, 653
Mph1103I	ATGCAT	1 cut(s)	235
MseI	TTAA	3 cut(s)	201, 389, 690
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	734
MspR9I	CCNGG	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	506, 660
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	5 cut(s)	77, 262, 292, 528, 669
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	355
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	1 cut(s)	669
PagI	TCATGA	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	11, 488
PfoI	TCCNGGA	1 cut(s)	407
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	407
PspFI	CCCAGC	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	700
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	4 cut(s)	152, 437, 534, 738
RsaNI	GTAC	4 cut(s)	151, 436, 533, 737
SaqAI	TTAA	3 cut(s)	201, 389, 690
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	409
SfaNI	GCATC	2 cut(s)	220, 242
SfcI	CTRYAG	2 cut(s)	609, 696
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	5 cut(s)	26, 53, 206, 391, 445
SspI	AATATT	1 cut(s)	687
SspMI	CTAG	3 cut(s)	15, 278, 464
StyD4I	CCNGG	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	428
TaiI	ACGT	2 cut(s)	73, 754
TaqI	TCGA	2 cut(s)	643, 710
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	5 cut(s)	26, 53, 206, 391, 445
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	2 cut(s)	11, 488
Tru1I	TTAA	3 cut(s)	201, 389, 690
Tru9I	TTAA	3 cut(s)	201, 389, 690
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	355
TspGWI	ACGGA	1 cut(s)	579
TspRI	CASTG	1 cut(s)	324
XapI	RAATTY	4 cut(s)	26, 53, 391, 445
XbaI	TCTAGA	1 cut(s)	463
XceI	RCATGY	1 cut(s)	669
XmaJI	CCTAGG	1 cut(s)	277
XspI	CTAG	3 cut(s)	15, 278, 464
ZraI	GACGTC	1 cut(s)	752
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.