Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008616

Physical Location & Seq

Genomic Coordinates Reverse (-)

38033983 .. 38037819

Gene Structure 3837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGATCAAAACAAGAATATACCTTCTCCTCCCGGTTCTCCTAGAACAGAAGGCCCTCCGTCCTCCGTCAGAGTCACAGTCACAGTCACAGCAGAAAACTAATTCATCGGTCTACTTAATTCTGAGAAGAATGGAAGCTACGAAGCCATGGATAAACGCTTTCAGAGCAAAATCAAAGCAAGCCACGCTGCTTTGGCTCGAGGGCTTCCGAGAGGCCTGCTGCCTTCATCGCGTCCTCATCCTCTGCCACCGGTCGAGAAAGCTTATGATACGAACAGGACAGTGTTTTCTATTAAACGGCTTCATTTTCTTAGGAAGTATAATTATCCTTAACTCAGTCATCATCCCAACTCTACACTGGATATTACCTGATAGATGCCCAGAATATAGTTCTCAAGAACTCTGCTCATTTGTTGGTACATTGAAATTTTATTCCGTCTTGCGGCATGGACTCGTACAACTCTTTTATGTAACTTGGTTCTACCCACTGTACGTATTCAGCATTATCCTGAGCAACCTCTGGTACAATGACATTGCTAAGTATGGATTTTCTGCAATGGGGAGATCCACGCCAACCACATTGGATCCTGTCAGACAAAATGATGTTGGTTTGGAAAGACCTGCTGGCGTAGAAGGGCATCTGTTTAATCTGCAGGGTCATGATTGGTATAGGAGAGCAGGTGTATTCAGTACTTCTTTTGACCTGTTTCTTCCTAGAGGTATATGTGACTGGATATATACCATATGTGGGGAAGGCAGTAAATTTTCTGCTTCTGTCCTGGATGTATGCCTATTACTGTTTCGAGTACAAATGGAATTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0012505 GO:0016236 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0061919

KEGG Pathways

Metabolic & Signaling

ko04115 map04115

Pfam Domains

Protein Families

EI24

Protein Analysis

275

Amino Acids

31.69

Weight (kDa)

9.25

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06676 AT4G06676
fragaria_vesca	FvH4_5g28680 FvH4_5g28680
malus_domestica	MD08G1240100.v1.1 MD15G1432200.v1.1
prunus_persica	Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1
pyrus_communis	pycom15g38140
rosa_chinensis	RchiOBHm_Chr7g0220831
rosa_laevigata	RLG00000002199
rosa_multiflora	Rmu_ssc0000286.1_g000019
rosa_roxburghii	Rroxscaffold_1G00038510 Rroxscaffold_3G00239010
rosa_rugosa	Rorug07G0197100
rosa_samantha	Rh7AG337600 Rh7BG328600 Rh7CG355700 Rh7DG336800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	668
Acc36I	ACCTGC	2 cut(s)	628, 668
AccI	GTMKAC	1 cut(s)	111
AccII	CGCG	1 cut(s)	231
AciI	CCGC	1 cut(s)	442
AclWI	GGATC	3 cut(s)	558, 578, 591
AcsI	RAATTY	3 cut(s)	425, 761, 815
AfaI	GTAC	6 cut(s)	418, 456, 491, 524, 691, 807
AfiI	CCNNNNNNNGG	2 cut(s)	441, 747
AgeI	ACCGGT	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	1 cut(s)	777
AluBI	AGCT	2 cut(s)	137, 262
AluI	AGCT	2 cut(s)	137, 262
AlwI	GGATC	3 cut(s)	558, 578, 591
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	51, 213
ApeKI	GCWGC	2 cut(s)	187, 219
ApoI	RAATTY	3 cut(s)	425, 761, 815
AsiGI	ACCGGT	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	52
AsuC2I	CCSGG	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	197
BamHI	GGATCC	1 cut(s)	583
BbvI	GCAGC	2 cut(s)	174, 206
BceAI	ACGGC	1 cut(s)	313
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BciT130I	CCWGG	1 cut(s)	779
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	32
BfaI	CTAG	2 cut(s)	41, 714
BfmI	CTRYAG	1 cut(s)	650
BfuAI	ACCTGC	2 cut(s)	628, 668
BisI	GCNGC	3 cut(s)	188, 220, 443
BlsI	GCNGC	3 cut(s)	189, 221, 444
BmcAI	AGTACT	1 cut(s)	691
Bme1390I	CCNGG	2 cut(s)	32, 779
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	585
BmrFI	CCNGG	2 cut(s)	32, 779
BmsI	GCATC	2 cut(s)	365, 646
Bpu10I	CCTNAGC	1 cut(s)	509
BpuEI	CTTGAG	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	32
BsaAI	YACGTR	1 cut(s)	493
BsaJI	CCNNGG	1 cut(s)	146
BsaWI	WCCGGW	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	664, 694
Bsc4I	CCNNNNNNNGG	2 cut(s)	441, 747
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	2 cut(s)	362, 734
Bse3DI	GCAATG	2 cut(s)	531, 561
BseBI	CCWGG	1 cut(s)	779
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	3 cut(s)	237, 342, 787
BseLI	CCNNNNNNNGG	2 cut(s)	441, 747
BseMI	GCAATG	2 cut(s)	531, 561
BseMII	CTCAG	3 cut(s)	113, 348, 500
BseNI	ACTGG	2 cut(s)	362, 734
BseRI	GAGGAG	1 cut(s)	17
BseXI	GCAGC	2 cut(s)	174, 206
Bsh1236I	CGCG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	254
BshFI	GGCC	2 cut(s)	53, 215
BshTI	ACCGGT	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	32, 250
BslI	CCNNNNNNNGG	2 cut(s)	441, 747
BsnI	GGCC	2 cut(s)	53, 215
BsoBI	CYCGRG	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	3, 563, 583
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	1 cut(s)	442
BspANI	GGCC	2 cut(s)	53, 215
BspCNI	CTCAG	3 cut(s)	114, 347, 501
BspFNI	CGCG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	585
BspMAI	CTGCAG	1 cut(s)	654
BspMI	ACCTGC	2 cut(s)	628, 668
BspPI	GGATC	3 cut(s)	558, 578, 591
BsrDI	GCAATG	2 cut(s)	531, 561
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	362, 734
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	3 cut(s)	3, 563, 583
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	5 cut(s)	78, 84, 282, 489, 798
BstBAI	YACGTR	1 cut(s)	493
BstC8I	GCNNGC	3 cut(s)	180, 217, 625
BstDEI	CTNAG	5 cut(s)	122, 310, 334, 509, 537
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	3 cut(s)	237, 342, 787
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	3 cut(s)	6, 566, 586
BstMBI	GATC	3 cut(s)	3, 563, 583
BstMCI	CGRYCG	1 cut(s)	254
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 184, 193, 228
BstNI	CCWGG	1 cut(s)	779
BstSCI	CCNGG	2 cut(s)	30, 777
BstSFI	CTRYAG	1 cut(s)	650
BstSNI	TACGTA	1 cut(s)	493
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	174, 206
BstX2I	RGATCY	2 cut(s)	563, 583
BstYI	RGATCY	2 cut(s)	563, 583
BsuRI	GGCC	2 cut(s)	53, 215
BtgI	CCRYGG	1 cut(s)	146
BtgZI	GCGATG	1 cut(s)	212
BtsCI	GGATG	3 cut(s)	237, 342, 787
BtsIMutI	CAGTG	3 cut(s)	287, 355, 485
BveI	ACCTGC	2 cut(s)	628, 668
Cac8I	GCNNGC	3 cut(s)	180, 217, 625
CciI	TCATGA	1 cut(s)	658
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	52
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	6 cut(s)	417, 455, 490, 523, 690, 806
CspAI	ACCGGT	1 cut(s)	249
CviAII	CATG	3 cut(s)	147, 446, 659
CviJI	RGCY	9 cut(s)	53, 137, 145, 182, 196, 204, 215, 262, 300
CviKI_1	RGCY	9 cut(s)	53, 137, 145, 182, 196, 204, 215, 262, 300
CviQI	GTAC	6 cut(s)	417, 455, 490, 523, 690, 806
DdeI	CTNAG	5 cut(s)	122, 310, 334, 509, 537
DpnI	GATC	3 cut(s)	5, 565, 585
DpnII	GATC	3 cut(s)	3, 563, 583
Eco105I	TACGTA	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	146
Eco147I	AGGCCT	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	777
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	3 cut(s)	150, 449, 662
FatI	CATG	3 cut(s)	146, 445, 658
FauNDI	CATATG	1 cut(s)	743
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	188, 220, 443
FokI	GGATG	3 cut(s)	224, 329, 794
Fsp4HI	GCNGC	3 cut(s)	188, 220, 443
FspBI	CTAG	2 cut(s)	41, 714
GluI	GCNGC	3 cut(s)	188, 220, 443
HaeIII	GGCC	2 cut(s)	53, 215
HapII	CCGG	2 cut(s)	32, 250
HgaI	GACGC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	150, 449, 662
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	2 cut(s)	71, 450
HpaII	CCGG	2 cut(s)	32, 250
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	6 cut(s)	70, 123, 164, 209, 593, 824
Hpy188III	TCNNGA	4 cut(s)	255, 395, 508, 659
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	5 cut(s)	32, 43, 233, 626, 746
HpyCH4III	ACNGT	5 cut(s)	78, 84, 282, 489, 798
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	2 cut(s)	554, 652
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 184, 193, 228
HpyF3I	CTNAG	5 cut(s)	122, 310, 334, 509, 537
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	3 cut(s)	150, 449, 662
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 563, 583
Lsp1109I	GCAGC	2 cut(s)	174, 206
LweI	GCATC	2 cut(s)	365, 646
MaeI	CTAG	2 cut(s)	41, 714
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	5 cut(s)	72, 78, 84, 469, 725
MalI	GATC	3 cut(s)	5, 565, 585
MboI	GATC	3 cut(s)	3, 563, 583
MboII	GAAGA	2 cut(s)	138, 701
MflI	RGATCY	2 cut(s)	563, 583
MluCI	AATT	6 cut(s)	100, 117, 321, 425, 761, 815
MlyI	GAGTC	2 cut(s)	80, 444
MnlI	CCTC	9 cut(s)	38, 65, 72, 193, 205, 245, 251, 527, 710
MseI	TTAA	4 cut(s)	116, 293, 330, 645
MspI	CCGG	2 cut(s)	32, 250
MspR9I	CCNGG	2 cut(s)	32, 779
MvaI	CCWGG	1 cut(s)	779
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	4 cut(s)	164, 184, 193, 228
NciI	CCSGG	1 cut(s)	32
NcoI	CCATGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	743
NdeII	GATC	3 cut(s)	3, 563, 583
NlaIII	CATG	3 cut(s)	150, 449, 662
NlaIV	GGNNCC	1 cut(s)	585
NmuCI	GTSAC	4 cut(s)	72, 78, 84, 725
PaeR7I	CTCGAG	1 cut(s)	197
PagI	TCATGA	1 cut(s)	658
PaqCI	CACCTGC	1 cut(s)	668
PceI	AGGCCT	1 cut(s)	215
PfoI	TCCNGGA	1 cut(s)	777
PinAI	ACCGGT	1 cut(s)	249
PkrI	GCNGC	3 cut(s)	189, 221, 444
PleI	GAGTC	2 cut(s)	79, 444
PpsI	GAGTC	2 cut(s)	79, 444
Ppu21I	YACGTR	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	777
PspGI	CCWGG	1 cut(s)	777
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	1 cut(s)	52
PspXI	VCTCGAGB	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	654
PsuI	RGATCY	2 cut(s)	563, 583
RsaI	GTAC	6 cut(s)	418, 456, 491, 524, 691, 807
RsaNI	GTAC	6 cut(s)	417, 455, 490, 523, 690, 806
SaqAI	TTAA	4 cut(s)	116, 293, 330, 645
SatI	GCNGC	3 cut(s)	188, 220, 443
Sau3AI	GATC	3 cut(s)	3, 563, 583
Sau96I	GGNCC	1 cut(s)	52
ScaI	AGTACT	1 cut(s)	691
SchI	GAGTC	2 cut(s)	80, 444
ScrFI	CCNGG	2 cut(s)	32, 779
SfaNI	GCATC	2 cut(s)	365, 646
SfcI	CTRYAG	1 cut(s)	650
Sfr274I	CTCGAG	1 cut(s)	197
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	197, 393
SmoI	CTYRAG	2 cut(s)	197, 393
SnaBI	TACGTA	1 cut(s)	493
Sse9I	AATT	6 cut(s)	100, 117, 321, 425, 761, 815
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	1 cut(s)	442
SspMI	CTAG	2 cut(s)	41, 714
StuI	AGGCCT	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	30, 777
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	5 cut(s)	78, 84, 282, 489, 798
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	3 cut(s)	198, 254, 802
TaqII	GACCGA	1 cut(s)	97
TasI	AATT	6 cut(s)	100, 117, 321, 425, 761, 815
TatI	WGTACW	2 cut(s)	689, 805
TauI	GCSGC	1 cut(s)	445
Tru1I	TTAA	4 cut(s)	116, 293, 330, 645
Tru9I	TTAA	4 cut(s)	116, 293, 330, 645
TscAI	CASTG	3 cut(s)	287, 362, 492
TseFI	GTSAC	4 cut(s)	72, 78, 84, 725
TseI	GCWGC	2 cut(s)	187, 219
Tsp45I	GTSAC	4 cut(s)	72, 78, 84, 725
TspDTI	ATGAA	3 cut(s)	93, 215, 292
TspGWI	ACGGA	3 cut(s)	47, 54, 424
TspRI	CASTG	3 cut(s)	287, 362, 492
XapI	RAATTY	3 cut(s)	425, 761, 815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	354
XhoI	CTCGAG	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	2 cut(s)	41, 714
ZrmI	AGTACT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.