Rroxscaffold_1G00038510

Protein EI24 homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
55981247 .. 55983101
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038510.1

Sequence Viewer

Length: 369 bp
ATGCAGAAATACAGAAGGATAGATTTCGCTACAAGCCTGGTATCTATATCTGGTAATGCAAATGAACTTGTAAATCAAGCACAAAATGATGCATCACCCTTACAAAATGCAGCTGGCATGGAAAGACCAACTGACCTAGGACGGGTCATGATTGGAATAGGAGAGCAGGTTTATTCGGTGCTTCTTTTGAGCTGTTTCTTCTTAGAGCTACAAGTTCGGAAGCCGAGCAACTTATTTCTTCTCGAAGAACAAGCCGGGGAGGCGCATGTTTTGGACGGCTTCAAATATTTAAGACTGCAAATAGTTTGTCGATGTGGTTGTTGTCGCTATTTCCCGTACAATGCATCTCGGAGTTATAATTTGTCTTAG

Protein Analysis

122

Amino Acids

13.75

Weight (kDa)

7.6

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
Acc36I ACCTGC 1 cut(s) 157
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 1 cut(s) 283
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 3 cut(s) 113, 192, 208
AluI AGCT 3 cut(s) 113, 192, 208
ApeKI GCWGC 1 cut(s) 110
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
AspA2I CCTAGG 1 cut(s) 136
AspLEI GCGC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 87
AvrII CCTAGG 1 cut(s) 136
BbvI GCAGC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 38
BcnI CCSGG 1 cut(s) 256
BfaI CTAG 1 cut(s) 137
BfuAI ACCTGC 1 cut(s) 157
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 1 cut(s) 111
BlnI CCTAGG 1 cut(s) 136
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 2 cut(s) 38, 256
BmrFI CCNGG 2 cut(s) 38, 256
BmsI GCATC 3 cut(s) 79, 101, 353
BpuMI CCSGG 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 136, 255
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 136, 255
BseLI CCNNNNNNNGG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 122
BsiSI CCGG 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 142
BspHI TCATGA 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 136, 255
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 202, 366
BstHHI GCGC 1 cut(s) 265
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 2 cut(s) 36, 254
BstV1I GCAGC 1 cut(s) 122
BveI ACCTGC 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 115
CciI TCATGA 1 cut(s) 147
CfoI GCGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 337
CviAII CATG 3 cut(s) 118, 148, 266
CviJI RGCY 7 cut(s) 36, 113, 192, 208, 223, 254, 279
CviKI_1 RGCY 7 cut(s) 36, 113, 192, 208, 223, 254, 279
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 2 cut(s) 202, 366
Eco130I CCWWGG 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 136
EcoT22I ATGCAT 2 cut(s) 94, 346
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 3 cut(s) 121, 151, 269
FaiI YATR 5 cut(s) 47, 119, 149, 267, 357
FatI CATG 3 cut(s) 117, 147, 265
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 137
GlaI GCGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 111
HapII CCGG 1 cut(s) 255
HhaI GCGC 1 cut(s) 265
Hin1II CATG 3 cut(s) 121, 151, 269
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HpaII CCGG 1 cut(s) 255
HphI GGTGA 1 cut(s) 87
Hpy188I TCNGA 2 cut(s) 219, 351
Hpy188III TCNNGA 2 cut(s) 148, 242
HpyAV CCTTC 1 cut(s) 9
HpyCH4V TGCA 6 cut(s) 4, 59, 92, 110, 298, 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 2 cut(s) 202, 366
Hsp92II CATG 3 cut(s) 121, 151, 269
HspAI GCGC 1 cut(s) 263
LpnPI CCDG 6 cut(s) 23, 36, 50, 99, 152, 268
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 3 cut(s) 79, 101, 353
MaeI CTAG 1 cut(s) 137
MboII GAAGA 3 cut(s) 190, 230, 257
MluCI AATT 1 cut(s) 358
MnlI CCTC 1 cut(s) 253
Mph1103I ATGCAT 2 cut(s) 94, 346
MseI TTAA 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 2 cut(s) 38, 256
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 260
NciI CCSGG 1 cut(s) 256
NlaIII CATG 3 cut(s) 121, 151, 269
NmeAIII GCCGAG 1 cut(s) 249
NsiI ATGCAT 2 cut(s) 94, 346
NspI RCATGY 1 cut(s) 269
PagI TCATGA 1 cut(s) 147
PkrI GCNGC 1 cut(s) 112
PsiI TTATAA 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 1 cut(s) 111
ScrFI CCNGG 2 cut(s) 38, 256
SetI ASST 5 cut(s) 115, 138, 171, 194, 210
SfaNI GCATC 3 cut(s) 79, 101, 353
Sse9I AATT 1 cut(s) 358
SspI AATATT 1 cut(s) 287
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 2 cut(s) 36, 254
StyI CCWWGG 1 cut(s) 136
TaqI TCGA 2 cut(s) 243, 310
TasI AATT 1 cut(s) 358
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 78
XceI RCATGY 1 cut(s) 269
XmaJI CCTAGG 1 cut(s) 136
XspI CTAG 1 cut(s) 137
Zsp2I ATGCAT 2 cut(s) 94, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.