Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008616

Physical Location & Seq

Genomic Coordinates Forward (+)

27677777 .. 27687837

Gene Structure 10061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAAGCTCTGAGCGCAAAATCTAAGCTAGCCGCGGCGCTTTGGCTTGAGGGCTTCAGACAGGCCTGTTGCCTTCACCGTGTGCTGATTCTCTGCCACAGGTCCAGAAAGCTTCTGATACGCACAGGACAGTGTTTTCTGTTGAATGGTTTCATTTTCTTAGGAAGCATAATTATCCTTAACTCGTTCATCATCCCAGCTCTATACTGGATATTGCCTGATATGTGTCCAGAATCTAGTTCTCAAGAATTCTGCTCATTTGCTGTCATTTGGGAATTTTATTCCTTCTTACGTCATGGACTCATACAAATCTTTTATGTAACTTGGTTATACCCATTATATGTATTCAGCTTTATCCTGAGCAACATCTGGTACAATGATATTGCCAAGTATGGATTTTCTGCAATGGGGAGACCTGTGGTTAACAAATTGGATCCCGTCAGGCAAAGTGATGCATCAACCTTACAAAATGCAGCTGGCATGGAAAGACCAACTGACCTAGGACGGGTCATGATTGGAATAGGAGAGCAGGTTTATTCAGTGCTTCTTTTGAGCTGTTTCTTCTTAGAGGTATATGTGACAGGATTCATACCATATGTGGGCAAGGCATTAAATTTTCTGCTTCTTTCCTGGATGTATGCCTACTACTGTTTTGAGTACAAATGGAATTTTTCTGAAATCGGTCTAGACAAAAGGCTGGACTTCTTTGAATCTAACTGGGCATTTTTTGCTGGTTTTGGAAGCCCATGCGTTGTACCTCTTTTCTTTTTCTCACCTCTTGTGAGCTATGGGTGTATGGCTATACTCTTTCCGTTGTTTGTTTTGACAGCTACAGGTTCAGAAGCTGAGCAACTTATTTCTTCTCGAAGAACAAGCTGGGGAGGCGCATGTTTTGGACGGCTTCAAATATTTAAGACTGCAGATAGTTTGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0012505 GO:0016236 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0061919

KEGG Pathways

Metabolic & Signaling

ko04115 map04115

Pfam Domains

Protein Families

EI24

Protein Analysis

311

Amino Acids

35.46

Weight (kDa)

7.96

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EI24	PF07264	24 - 271	6.2e-28	Sulfate transporter CysZ/Etoposide-induced protein 2.4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06676 AT4G06676
fragaria_vesca	FvH4_5g28680 FvH4_5g28680
malus_domestica	MD08G1240100.v1.1 MD15G1432200.v1.1
prunus_persica	Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1
pyrus_communis	pycom15g38140
rosa_chinensis	RchiOBHm_Chr7g0220831
rosa_laevigata	RLG00000002199
rosa_multiflora	Rmu_ssc0000286.1_g000019
rosa_roxburghii	Rroxscaffold_1G00038510 Rroxscaffold_3G00239010
rosa_rugosa	Rorug07G0197100
rosa_samantha	Rh7AG337600 Rh7BG328600 Rh7CG355700 Rh7DG336800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	520
AccII	CGCG	1 cut(s)	35
AciI	CCGC	2 cut(s)	33, 35
AclWI	GGATC	2 cut(s)	428, 441
AcsI	RAATTY	4 cut(s)	248, 275, 613, 667
AcuI	CTGAAG	1 cut(s)	40
AdeI	CACNNNGTG	1 cut(s)	82
AfaI	GTAC	3 cut(s)	374, 659, 756
AfiI	CCNNNNNNNGG	2 cut(s)	505, 599
AgsI	TTSAA	3 cut(s)	145, 710, 905
AjnI	CCWGG	1 cut(s)	629
Alw26I	GTCTC	1 cut(s)	406
AlwI	GGATC	2 cut(s)	428, 441
AlwNI	CAGNNNCTG	1 cut(s)	845
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	4 cut(s)	248, 275, 613, 667
Asp700I	GAANNNNTTC	1 cut(s)	149
AspA2I	CCTAGG	1 cut(s)	499
AspLEI	GCGC	3 cut(s)	17, 40, 887
AspS9I	GGNCC	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	68, 765
AsuNHI	GCTAGC	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	102
AvrII	CCTAGG	1 cut(s)	499
BamHI	GGATCC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	485
BceAI	ACGGC	1 cut(s)	914
BciT130I	CCWGG	1 cut(s)	631
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	4 cut(s)	29, 237, 500, 686
BfmI	CTRYAG	2 cut(s)	831, 918
BfoI	RGCGCY	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	520
BisI	GCNGC	3 cut(s)	33, 36, 474
BlnI	CCTAGG	1 cut(s)	499
BlpI	GCTNAGC	1 cut(s)	846
BlsI	GCNGC	3 cut(s)	34, 37, 475
Bme1390I	CCNGG	1 cut(s)	631
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	631
BmrI	ACTGGG	1 cut(s)	727
BmsI	GCATC	2 cut(s)	442, 464
BmtI	GCTAGC	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	727
Bpu10I	CCTNAGC	1 cut(s)	359
Bpu1102I	GCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	2 cut(s)	68, 228
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	2 cut(s)	33, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 599
Bse1I	ACTGG	2 cut(s)	212, 722
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	631
BseDI	CCNNGG	2 cut(s)	33, 499
BseGI	GGATG	2 cut(s)	192, 639
BseLI	CCNNNNNNNGG	2 cut(s)	505, 599
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	350, 837
BseNI	ACTGG	2 cut(s)	212, 722
BseXI	GCAGC	1 cut(s)	485
BseYI	CCCAGC	2 cut(s)	196, 876
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	505, 599
BsmAI	GTCTC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	65
Bso31I	GGTCTC	1 cut(s)	406
Bsp143I	GATC	1 cut(s)	433
Bsp1720I	GCTNAGC	1 cut(s)	846
BspACI	CCGC	2 cut(s)	33, 35
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	351, 838
BspFNI	CGCG	1 cut(s)	35
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	1 cut(s)	922
BspMI	ACCTGC	1 cut(s)	520
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	428, 441
BspTNI	GGTCTC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	212, 722
BssECI	CCNNGG	2 cut(s)	33, 499
BssMI	GATC	1 cut(s)	433
BssT1I	CCWWGG	1 cut(s)	499
Bst2UI	CCWGG	1 cut(s)	631
Bst4CI	ACNGT	3 cut(s)	80, 132, 650
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstC8I	GCNNGC	2 cut(s)	30, 478
BstDEI	CTNAG	6 cut(s)	11, 24, 160, 359, 565, 846
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	192, 639
BstFNI	CGCG	1 cut(s)	35
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	3 cut(s)	17, 40, 887
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 728, 882
BstNI	CCWGG	1 cut(s)	631
BstNSI	RCATGY	1 cut(s)	891
BstSCI	CCNGG	1 cut(s)	629
BstSFI	CTRYAG	2 cut(s)	831, 918
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	485
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	192, 639
BtsIMutI	CAGTG	2 cut(s)	137, 546
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	30, 478
CaiI	CAGNNNCTG	1 cut(s)	845
CciI	TCATGA	1 cut(s)	510
CfoI	GCGC	3 cut(s)	17, 40, 887
Cfr13I	GGNCC	1 cut(s)	102
Cfr42I	CCGCGG	1 cut(s)	36
Csp6I	GTAC	3 cut(s)	373, 658, 755
CviAII	CATG	5 cut(s)	296, 481, 511, 747, 888
CviQI	GTAC	3 cut(s)	373, 658, 755
DdeI	CTNAG	6 cut(s)	11, 24, 160, 359, 565, 846
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
DraIII	CACNNNGTG	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	499
Eco147I	AGGCCT	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	629
EcoT14I	CCWWGG	1 cut(s)	499
EcoT22I	ATGCAT	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	5 cut(s)	299, 484, 514, 750, 891
FatI	CATG	5 cut(s)	295, 480, 510, 746, 887
FauNDI	CATATG	1 cut(s)	595
Fnu4HI	GCNGC	3 cut(s)	33, 36, 474
FokI	GGATG	2 cut(s)	179, 646
Fsp4HI	GCNGC	3 cut(s)	33, 36, 474
FspBI	CTAG	4 cut(s)	29, 237, 500, 686
GlaI	GCGC	3 cut(s)	16, 39, 886
GluI	GCNGC	3 cut(s)	33, 36, 474
GsaI	CCCAGC	2 cut(s)	200, 880
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	65
HhaI	GCGC	3 cut(s)	17, 40, 887
Hin1II	CATG	5 cut(s)	299, 484, 514, 750, 891
Hin6I	GCGC	3 cut(s)	15, 38, 885
HinP1I	GCGC	3 cut(s)	15, 38, 885
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	5 cut(s)	88, 233, 300, 585, 710
HpaI	GTTAAC	1 cut(s)	424
HphI	GGTGA	2 cut(s)	68, 765
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	5 cut(s)	12, 59, 117, 676, 841
Hpy188III	TCNNGA	7 cut(s)	105, 230, 245, 358, 511, 686, 864
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	2 cut(s)	83, 295
HpyCH4III	ACNGT	3 cut(s)	80, 132, 650
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	4 cut(s)	404, 455, 473, 920
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 728, 882
HpyF3I	CTNAG	6 cut(s)	11, 24, 160, 359, 565, 846
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	5 cut(s)	299, 484, 514, 750, 891
HspAI	GCGC	3 cut(s)	15, 38, 885
KspAI	GTTAAC	1 cut(s)	424
KspI	CCGCGG	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	433
Lsp1109I	GCAGC	1 cut(s)	485
LweI	GCATC	2 cut(s)	442, 464
MaeI	CTAG	4 cut(s)	29, 237, 500, 686
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	2 cut(s)	319, 577
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	3 cut(s)	553, 852, 879
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	6 cut(s)	171, 248, 275, 428, 613, 667
MlyI	GAGTC	1 cut(s)	294
MnlI	CCTC	5 cut(s)	43, 562, 768, 786, 875
Mph1103I	ATGCAT	1 cut(s)	457
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	4 cut(s)	180, 423, 611, 912
MspA1I	CMGCKG	2 cut(s)	35, 476
MspR9I	CCNGG	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	631
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	14, 728, 882
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	1 cut(s)	433
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	5 cut(s)	299, 484, 514, 750, 891
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	1 cut(s)	891
PagI	TCATGA	1 cut(s)	510
PceI	AGGCCT	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	4 cut(s)	88, 233, 585, 710
PfoI	TCCNGGA	1 cut(s)	629
PkrI	GCNGC	3 cut(s)	34, 37, 475
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	629
PspFI	CCCAGC	2 cut(s)	196, 876
PspGI	CCWGG	1 cut(s)	629
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	922
PstNI	CAGNNNCTG	1 cut(s)	845
PsuI	RGATCY	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	3 cut(s)	374, 659, 756
RsaNI	GTAC	3 cut(s)	373, 658, 755
SacII	CCGCGG	1 cut(s)	36
SaqAI	TTAA	4 cut(s)	180, 423, 611, 912
SatI	GCNGC	3 cut(s)	33, 36, 474
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	631
SfaNI	GCATC	2 cut(s)	442, 464
SfcI	CTRYAG	2 cut(s)	831, 918
Sfr303I	CCGCGG	1 cut(s)	36
SgrBI	CCGCGG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	47, 243
SmoI	CTYRAG	2 cut(s)	47, 243
Sse9I	AATT	6 cut(s)	171, 248, 275, 428, 613, 667
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	2 cut(s)	33, 35
SspI	AATATT	1 cut(s)	909
SspMI	CTAG	4 cut(s)	29, 237, 500, 686
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	629
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	3 cut(s)	80, 132, 650
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	865
TaqII	GACCGA	1 cut(s)	671
TasI	AATT	6 cut(s)	171, 248, 275, 428, 613, 667
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	2 cut(s)	35, 38
TfiI	GAWTC	4 cut(s)	88, 233, 585, 710
Tru1I	TTAA	4 cut(s)	180, 423, 611, 912
Tru9I	TTAA	4 cut(s)	180, 423, 611, 912
TscAI	CASTG	2 cut(s)	137, 546
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	3 cut(s)	142, 178, 577
TspGWI	ACGGA	1 cut(s)	801
TspRI	CASTG	2 cut(s)	137, 546
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	4 cut(s)	248, 275, 613, 667
XbaI	TCTAGA	1 cut(s)	685
XceI	RCATGY	1 cut(s)	891
XcmI	CCANNNNNNNNNTGG	1 cut(s)	204
XmaJI	CCTAGG	1 cut(s)	499
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	4 cut(s)	29, 237, 500, 686
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.