Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000286.1

Orthogroup ID

OG0008616

Physical Location & Seq

Genomic Coordinates Forward (+)

120573 .. 132042

Gene Structure 11470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000286.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

atggaagctctgagcgcaaaatctaagctagccgcggtgctttggcttgagggcttcagacaggcctgttgccttcaccgtgtgctgattctctgccacaggtccagaaagcttctgatacgcacaggacagtgttttctgttgaacggtttcattttcttaggaagcataattatccttaactcgttcatcatcccagctctatactggatattgcctgatatgtgtccagaatctagttctcaagaattctgctcatttgctgtcatttgggaattttattccttcttacgtcatggactcatacaaatcttttatgtaacttggttatacccattatatgtattcagctttatcctgagcaacatctggtacaatgatattgccaagtatggattttctgcaatggggagacctgtgattaacaaattggatcccgtcaggcaaagtgatgcatcaaccttacaaaatgcagctggcatggaaagaccaactgacctaggacgggtcatgattggaataggagagcaggtttattcagtgcttcttttgagctgtttcttcttagaggtatatgtgacaggatttataccgtatgtgggcaaggcattaaattttctgcttctttcctggatgtatgcctactactgttttgagtacaaatggaatttttctgaaatcggtctagacaaaaggctggacttctttgaatctaactgggcattttttgctggttttggaagcccatgcgttgtacctcttttctttttctcacctcttgtgagctatgggtgtatggctatactctttccgctgtttgttttgacagctacaggttcagaagctgagcaacttatttcttctcgaagaacaagctggggaggcgcatgtttcggacggcttcaaatatttaagactgcagatagtttgtcgatgtggttgttgtcgctatttcctgtacaatcaaagagacgtctgcaagaacagaaatatctcagtcttcgacaacgaaactctccaaatcaattcgtctccttgctctggtcgtccctctggcatcctctagcggcgattctcacccacgacggcgctagaaggcggcgaagattcgtgtattcagacccgatcggttctcctatctccgacgtcggcgaggcttcaagtcttcttggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0012505 GO:0016236 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0061919

KEGG Pathways

Metabolic & Signaling

ko04115 map04115

Pfam Domains

Protein Families

EI24

Protein Analysis

391

Amino Acids

44.72

Weight (kDa)

8.91

Isoelectric Point (pI)

57.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06676 AT4G06676
fragaria_vesca	FvH4_5g28680 FvH4_5g28680
malus_domestica	MD08G1240100.v1.1 MD15G1432200.v1.1
prunus_persica	Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1 Prupe.1G576600_v2.0.a1
pyrus_communis	pycom15g38140
rosa_chinensis	RchiOBHm_Chr7g0220831
rosa_laevigata	RLG00000002199
rosa_multiflora	Rmu_ssc0000286.1_g000019
rosa_roxburghii	Rroxscaffold_1G00038510 Rroxscaffold_3G00239010
rosa_rugosa	Rorug07G0197100
rosa_samantha	Rh7AG337600 Rh7BG328600 Rh7CG355700 Rh7DG336800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	976, 1149
Acc36I	ACCTGC	1 cut(s)	520
AccII	CGCG	1 cut(s)	35
AciI	CCGC	5 cut(s)	33, 35, 812, 1067, 1099
AclWI	GGATC	2 cut(s)	428, 441
AcsI	RAATTY	4 cut(s)	248, 275, 613, 667
AcuI	CTGAAG	1 cut(s)	40
AcyI	GRCGYC	2 cut(s)	973, 1146
AdeI	CACNNNGTG	1 cut(s)	82
AfaI	GTAC	4 cut(s)	374, 659, 756, 960
AfiI	CCNNNNNNNGG	3 cut(s)	505, 599, 1041
AgsI	TTSAA	4 cut(s)	145, 710, 905, 1161
AjnI	CCWGG	1 cut(s)	629
Alw26I	GTCTC	3 cut(s)	406, 964, 1036
AlwI	GGATC	2 cut(s)	428, 441
AlwNI	CAGNNNCTG	1 cut(s)	845
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	4 cut(s)	248, 275, 613, 667
Asp700I	GAANNNNTTC	1 cut(s)	149
AspA2I	CCTAGG	1 cut(s)	499
AspLEI	GCGC	3 cut(s)	17, 887, 1091
AspS9I	GGNCC	1 cut(s)	102
AsuHPI	GGTGA	3 cut(s)	68, 765, 1069
AsuNHI	GCTAGC	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	102
AvrII	CCTAGG	1 cut(s)	499
BamHI	GGATCC	1 cut(s)	433
BbsI	GAAGAC	2 cut(s)	992, 1157
BbvI	GCAGC	1 cut(s)	485
BceAI	ACGGC	2 cut(s)	914, 1102
BciT130I	CCWGG	1 cut(s)	631
BcoDI	GTCTC	3 cut(s)	406, 964, 1036
BfaI	CTAG	6 cut(s)	29, 237, 500, 686, 1064, 1092
BfmI	CTRYAG	2 cut(s)	831, 918
BfoI	RGCGCY	1 cut(s)	1092
BfuAI	ACCTGC	1 cut(s)	520
BisI	GCNGC	4 cut(s)	33, 474, 1068, 1100
BlnI	CCTAGG	1 cut(s)	499
BlpI	GCTNAGC	1 cut(s)	846
BlsI	GCNGC	4 cut(s)	34, 475, 1069, 1101
Bme1390I	CCNGG	1 cut(s)	631
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	631
BmrI	ACTGGG	1 cut(s)	727
BmsI	GCATC	3 cut(s)	442, 464, 1066
BmtI	GCTAGC	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	727
BpiI	GAAGAC	2 cut(s)	992, 1157
Bpu10I	CCTNAGC	1 cut(s)	359
Bpu1102I	GCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	2 cut(s)	68, 228
BsaHI	GRCGYC	2 cut(s)	973, 1146
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	2 cut(s)	33, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	3 cut(s)	505, 599, 1041
Bse1I	ACTGG	2 cut(s)	212, 722
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	631
BseDI	CCNNGG	2 cut(s)	33, 499
BseGI	GGATG	3 cut(s)	192, 639, 1057
BseLI	CCNNNNNNNGG	3 cut(s)	505, 599, 1041
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	3 cut(s)	350, 837, 1009
BseNI	ACTGG	2 cut(s)	212, 722
BseXI	GCAGC	1 cut(s)	485
BseYI	CCCAGC	2 cut(s)	196, 876
Bsh1236I	CGCG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	1128
BshFI	GGCC	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	1128
BslFI	GGGAC	1 cut(s)	1033
BslI	CCNNNNNNNGG	3 cut(s)	505, 599, 1041
BsmAI	GTCTC	3 cut(s)	406, 964, 1036
BsmBI	CGTCTC	2 cut(s)	964, 1036
BsmFI	GGGAC	1 cut(s)	1033
BsnI	GGCC	1 cut(s)	65
Bso31I	GGTCTC	1 cut(s)	406
Bsp1407I	TGTACA	1 cut(s)	958
Bsp143I	GATC	2 cut(s)	433, 1125
Bsp1720I	GCTNAGC	1 cut(s)	846
BspACI	CCGC	5 cut(s)	33, 35, 812, 1067, 1099
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	3 cut(s)	351, 838, 1008
BspFNI	CGCG	1 cut(s)	35
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	1 cut(s)	922
BspMI	ACCTGC	1 cut(s)	520
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	428, 441
BspTNI	GGTCTC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	411
BsrGI	TGTACA	1 cut(s)	958
BsrI	ACTGG	2 cut(s)	212, 722
BssECI	CCNNGG	2 cut(s)	33, 499
BssMI	GATC	2 cut(s)	433, 1125
BssNI	GRCGYC	2 cut(s)	973, 1146
BssT1I	CCWWGG	1 cut(s)	499
Bst2UI	CCWGG	1 cut(s)	631
Bst4CI	ACNGT	5 cut(s)	80, 132, 149, 594, 650
BstACI	GRCGYC	2 cut(s)	973, 1146
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstAUI	TGTACA	1 cut(s)	958
BstC8I	GCNNGC	2 cut(s)	30, 478
BstDEI	CTNAG	7 cut(s)	11, 24, 160, 359, 565, 846, 995
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	3 cut(s)	192, 639, 1057
BstFNI	CGCG	1 cut(s)	35
BstH2I	RGCGCY	1 cut(s)	1092
BstHHI	GCGC	3 cut(s)	17, 887, 1091
BstKTI	GATC	2 cut(s)	436, 1128
BstMAI	GTCTC	3 cut(s)	406, 964, 1036
BstMBI	GATC	2 cut(s)	433, 1125
BstMCI	CGRYCG	1 cut(s)	1128
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 728, 882
BstNI	CCWGG	1 cut(s)	631
BstNSI	RCATGY	1 cut(s)	891
BstSCI	CCNGG	1 cut(s)	629
BstSFI	CTRYAG	2 cut(s)	831, 918
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	485
BstV2I	GAAGAC	2 cut(s)	992, 1157
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	3 cut(s)	192, 639, 1057
BtsIMutI	CAGTG	2 cut(s)	137, 546
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	30, 478
CaiI	CAGNNNCTG	1 cut(s)	845
CciI	TCATGA	1 cut(s)	510
CfoI	GCGC	3 cut(s)	17, 887, 1091
Cfr13I	GGNCC	1 cut(s)	102
Cfr42I	CCGCGG	1 cut(s)	36
Csp6I	GTAC	4 cut(s)	373, 658, 755, 959
CviAII	CATG	5 cut(s)	296, 481, 511, 747, 888
CviQI	GTAC	4 cut(s)	373, 658, 755, 959
DdeI	CTNAG	7 cut(s)	11, 24, 160, 359, 565, 846, 995
DpnI	GATC	2 cut(s)	435, 1127
DpnII	GATC	2 cut(s)	433, 1125
DraIII	CACNNNGTG	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	499
Eco147I	AGGCCT	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	629
EcoT14I	CCWWGG	1 cut(s)	499
EcoT22I	ATGCAT	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	499
Esp3I	CGTCTC	2 cut(s)	964, 1036
FaeI	CATG	5 cut(s)	299, 484, 514, 750, 891
FaqI	GGGAC	1 cut(s)	1033
FatI	CATG	5 cut(s)	295, 480, 510, 746, 887
Fnu4HI	GCNGC	4 cut(s)	33, 474, 1068, 1100
FokI	GGATG	3 cut(s)	179, 646, 1044
Fsp4HI	GCNGC	4 cut(s)	33, 474, 1068, 1100
FspBI	CTAG	6 cut(s)	29, 237, 500, 686, 1064, 1092
GlaI	GCGC	3 cut(s)	16, 886, 1090
GluI	GCNGC	4 cut(s)	33, 474, 1068, 1100
GsaI	CCCAGC	2 cut(s)	200, 880
HaeII	RGCGCY	1 cut(s)	1092
HaeIII	GGCC	1 cut(s)	65
HhaI	GCGC	3 cut(s)	17, 887, 1091
Hin1I	GRCGYC	2 cut(s)	973, 1146
Hin1II	CATG	5 cut(s)	299, 484, 514, 750, 891
Hin6I	GCGC	3 cut(s)	15, 885, 1089
HinP1I	GCGC	3 cut(s)	15, 885, 1089
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	6 cut(s)	88, 233, 300, 710, 1072, 1107
HphI	GGTGA	3 cut(s)	68, 765, 1069
Hpy188I	TCNGA	8 cut(s)	12, 59, 117, 676, 841, 896, 1120, 1144
Hpy188III	TCNNGA	7 cut(s)	105, 230, 245, 358, 511, 686, 864
Hpy99I	CGWCG	3 cut(s)	1088, 1148, 1151
HpyAV	CCTTC	3 cut(s)	83, 295, 1089
HpyCH4III	ACNGT	5 cut(s)	80, 132, 149, 594, 650
HpyCH4IV	ACGT	3 cut(s)	292, 973, 1146
HpyCH4V	TGCA	5 cut(s)	404, 455, 473, 920, 979
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 728, 882
HpyF3I	CTNAG	7 cut(s)	11, 24, 160, 359, 565, 846, 995
HpySE526I	ACGT	3 cut(s)	292, 973, 1146
Hsp92I	GRCGYC	2 cut(s)	973, 1146
Hsp92II	CATG	5 cut(s)	299, 484, 514, 750, 891
HspAI	GCGC	3 cut(s)	15, 885, 1089
KspI	CCGCGG	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	433, 1125
Lsp1109I	GCAGC	1 cut(s)	485
LweI	GCATC	3 cut(s)	442, 464, 1066
MaeI	CTAG	6 cut(s)	29, 237, 500, 686, 1064, 1092
MaeII	ACGT	3 cut(s)	292, 973, 1146
MaeIII	GTNAC	2 cut(s)	319, 577
MalI	GATC	2 cut(s)	435, 1127
MboI	GATC	2 cut(s)	433, 1125
MboII	GAAGA	6 cut(s)	553, 852, 879, 992, 1116, 1157
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	7 cut(s)	171, 248, 275, 428, 613, 667, 1025
MlyI	GAGTC	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	1167
MnlI	CCTC	8 cut(s)	43, 562, 768, 786, 875, 1061, 1071, 1147
Mph1103I	ATGCAT	1 cut(s)	457
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	4 cut(s)	180, 423, 611, 912
MspA1I	CMGCKG	3 cut(s)	35, 476, 814
MspR9I	CCNGG	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	631
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	14, 728, 882
NdeII	GATC	2 cut(s)	433, 1125
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	5 cut(s)	299, 484, 514, 750, 891
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	1 cut(s)	891
PagI	TCATGA	1 cut(s)	510
PceI	AGGCCT	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	5 cut(s)	88, 233, 710, 1072, 1107
PfoI	TCCNGGA	1 cut(s)	629
PkrI	GCNGC	4 cut(s)	34, 475, 1069, 1101
Ple19I	CGATCG	1 cut(s)	1128
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	629
PspFI	CCCAGC	2 cut(s)	196, 876
PspGI	CCWGG	1 cut(s)	629
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	922
PstNI	CAGNNNCTG	1 cut(s)	845
PsuI	RGATCY	1 cut(s)	433
PvuI	CGATCG	1 cut(s)	1128
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	4 cut(s)	374, 659, 756, 960
RsaNI	GTAC	4 cut(s)	373, 658, 755, 959
SacII	CCGCGG	1 cut(s)	36
SaqAI	TTAA	4 cut(s)	180, 423, 611, 912
SatI	GCNGC	4 cut(s)	33, 474, 1068, 1100
Sau3AI	GATC	2 cut(s)	433, 1125
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	631
SfaNI	GCATC	3 cut(s)	442, 464, 1066
SfcI	CTRYAG	2 cut(s)	831, 918
Sfr303I	CCGCGG	1 cut(s)	36
SgrBI	CCGCGG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	47, 243
SmoI	CTYRAG	2 cut(s)	47, 243
Sse9I	AATT	7 cut(s)	171, 248, 275, 428, 613, 667, 1025
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	5 cut(s)	33, 35, 812, 1067, 1099
SspI	AATATT	1 cut(s)	909
SspMI	CTAG	6 cut(s)	29, 237, 500, 686, 1064, 1092
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	629
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	5 cut(s)	80, 132, 149, 594, 650
TaiI	ACGT	3 cut(s)	295, 976, 1149
TaqI	TCGA	3 cut(s)	865, 932, 1003
TaqII	GACCGA	1 cut(s)	671
TasI	AATT	7 cut(s)	171, 248, 275, 428, 613, 667, 1025
TatI	WGTACW	2 cut(s)	657, 958
TauI	GCSGC	3 cut(s)	35, 1070, 1102
TfiI	GAWTC	5 cut(s)	88, 233, 710, 1072, 1107
Tru1I	TTAA	4 cut(s)	180, 423, 611, 912
Tru9I	TTAA	4 cut(s)	180, 423, 611, 912
TscAI	CASTG	2 cut(s)	137, 546
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	2 cut(s)	142, 178
TspRI	CASTG	2 cut(s)	137, 546
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	4 cut(s)	248, 275, 613, 667
XbaI	TCTAGA	1 cut(s)	685
XceI	RCATGY	1 cut(s)	891
XcmI	CCANNNNNNNNNTGG	1 cut(s)	204
XmaJI	CCTAGG	1 cut(s)	499
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	6 cut(s)	29, 237, 500, 686, 1064, 1092
ZraI	GACGTC	2 cut(s)	974, 1147
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.