Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005826

Physical Location & Seq

Genomic Coordinates Forward (+)

1656866 .. 1661601

Gene Structure 4736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G017700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGATAATGATAATGATTTCACTTTTTGCCAGGTTGGCTCACCTGGCAACCAGGATGGTCTTGAGACAAAGAAGCTCACTTCAGATATAGAAAATATTGCCATAAAAGATGGATTGTCAAATGGCACTAATAGTAATCAGAATAGAGGTTTTCTGTGGCAAAGTGGATTGCCATTAGGTGCCACTTCTGAAAAGCAGGAAACAGTTGGTTCTCTTTCTGTCAGTGTTATTGATGCGTCATCCACGAACCGAAAATCTGAATTACCAAAACAACCATCGTCAGGAGGTGCTGGGAAGTCAGTGAAGCCTGTACCTCGTGCCAAAGTTCCTTTTGAGAAGGGGTATAGCCAAATGGATTGGCTCAAGCTTACTCGAACACATCCTGACCTTGCAGGTTTAAAGGGACAGTCAAATAAGAGGCTGATTTCAATAAATGAAGTTAAACAACACCAAAAAGGGGATTCAATGTGGACTGTTCTAAAAGGTCGTGTGTACAATTTGTCTCCTTACATGAGATTTCACCCTGGAGGTGTTGATATGCTAAAGAAGGCGGTAGGAAAAGACTGTACATCTTTATTCAATAAATACCATGCTTGGGTGAATGCTGAATTTTTACTTGAGAAGTGTCTTGTTGGTACTCTAGACGATGGCGAAGGGCAACATTCCAATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

225

Amino Acids

24.54

Weight (kDa)

8.87

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09680 AT5G09680 AT5G09680
fragaria_vesca	FvH4_7g01340 FvH4_7g01340 FvH4_7g01340 FvH4_7g01340
malus_domestica	MD02G1307800.v1.1 MD07G1017800.v1.1
prunus_persica	Prupe.2G017700_v2.0.a1 Prupe.2G019000_v2.0.a1 Prupe.2G019000_v2.0.a1
pyrus_communis	pycom02g25900 pycom07g01360
rosa_chinensis	RchiOBHm_Chr1g0317051
rosa_laevigata	RLG00000030630
rosa_multiflora	Rmu_sc0003689.1_g000022 Rmu_sc0018727.1_g000003
rosa_roxburghii	Rroxscaffold_4G00330700
rosa_rugosa	Rorug01G0014000 Rorug01G0014100 Rorug01G0014200 Rorug01G0014200
rosa_samantha	Rh1AG025200 Rh1BG022000 Rh1CG023600 Rh1DG022400
rosa_wichuraiana	Rw1G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	1 cut(s)	551
AcsI	RAATTY	1 cut(s)	608
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	4 cut(s)	312, 494, 568, 637
AfiI	CCNNNNNNNGG	3 cut(s)	281, 457, 595
AgsI	TTSAA	3 cut(s)	429, 465, 580
AjnI	CCWGG	4 cut(s)	30, 43, 51, 523
AluBI	AGCT	2 cut(s)	76, 367
AluI	AGCT	2 cut(s)	76, 367
Alw26I	GTCTC	2 cut(s)	59, 507
ApoI	RAATTY	1 cut(s)	608
AsuHPI	GGTGA	3 cut(s)	33, 512, 610
BanI	GGYRCC	1 cut(s)	179
BauI	CACGAG	1 cut(s)	315
BccI	CCATC	4 cut(s)	50, 104, 283, 641
BciT130I	CCWGG	4 cut(s)	32, 45, 53, 525
BcoDI	GTCTC	2 cut(s)	59, 507
BfaI	CTAG	1 cut(s)	641
BfuAI	ACCTGC	1 cut(s)	383
BglI	GCCNNNNNGGC	1 cut(s)	36
Bme1390I	CCNGG	4 cut(s)	32, 45, 53, 525
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	4 cut(s)	32, 45, 53, 525
BmsI	GCATC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	546
BpuEI	CTTGAG	3 cut(s)	83, 347, 638
BsaJI	CCNNGG	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 457, 595
BseBI	CCWGG	4 cut(s)	32, 45, 53, 525
BseDI	CCNNGG	1 cut(s)	523
BseGI	GGATG	3 cut(s)	61, 239, 379
BseLI	CCNNNNNNNGG	3 cut(s)	281, 457, 595
BseYI	CCCAGC	1 cut(s)	290
BshNI	GGYRCC	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	3 cut(s)	281, 457, 595
BsmAI	GTCTC	2 cut(s)	59, 507
BsmFI	GGGAC	1 cut(s)	417
BsmI	GAATGC	1 cut(s)	607
Bsp1407I	TGTACA	2 cut(s)	492, 566
BspACI	CCGC	1 cut(s)	551
BspLI	GGNNCC	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	383
BspT107I	GGYRCC	1 cut(s)	179
BsrGI	TGTACA	2 cut(s)	492, 566
BssECI	CCNNGG	1 cut(s)	523
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	4 cut(s)	32, 45, 53, 525
Bst4CI	ACNGT	4 cut(s)	205, 408, 475, 566
BstAUI	TGTACA	2 cut(s)	492, 566
BstF5I	GGATG	3 cut(s)	61, 239, 379
BstMAI	GTCTC	2 cut(s)	59, 507
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 45
BstNI	CCWGG	4 cut(s)	32, 45, 53, 525
BstSCI	CCNGG	4 cut(s)	30, 43, 51, 523
BtsCI	GGATG	3 cut(s)	61, 239, 379
BtsIMutI	CAGTG	2 cut(s)	229, 306
BveI	ACCTGC	1 cut(s)	383
CseI	GACGC	1 cut(s)	225
Csp6I	GTAC	4 cut(s)	311, 493, 567, 636
CviAII	CATG	2 cut(s)	511, 590
CviJI	RGCY	7 cut(s)	39, 76, 307, 348, 361, 367, 421
CviKI_1	RGCY	7 cut(s)	39, 76, 307, 348, 361, 367, 421
CviQI	GTAC	4 cut(s)	311, 493, 567, 636
DraI	TTTAAA	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	66
EcoRII	CCWGG	4 cut(s)	30, 43, 51, 523
FaeI	CATG	2 cut(s)	514, 593
FaiI	YATR	6 cut(s)	89, 104, 345, 512, 539, 591
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	2 cut(s)	510, 589
FokI	GGATG	3 cut(s)	68, 226, 366
FspBI	CTAG	1 cut(s)	641
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	546
HgaI	GACGC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	514, 593
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	1 cut(s)	461
HphI	GGTGA	3 cut(s)	33, 512, 610
Hpy166II	GTNNAC	2 cut(s)	471, 493
Hpy188I	TCNGA	4 cut(s)	85, 141, 190, 259
Hpy188III	TCNNGA	4 cut(s)	62, 282, 383, 641
Hpy8I	GTNNAC	2 cut(s)	471, 493
HpyAV	CCTTC	3 cut(s)	331, 541, 647
HpyCH4III	ACNGT	4 cut(s)	205, 408, 475, 566
HpyCH4V	TGCA	1 cut(s)	392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 45
Hsp92II	CATG	2 cut(s)	514, 593
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	641
MluCI	AATT	3 cut(s)	260, 496, 608
MnlI	CCTC	5 cut(s)	140, 278, 324, 411, 521
MseI	TTAA	2 cut(s)	398, 441
MspR9I	CCNGG	4 cut(s)	32, 45, 53, 525
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	4 cut(s)	32, 45, 53, 525
MwoI	GCNNNNNNNGC	2 cut(s)	36, 45
NlaIII	CATG	2 cut(s)	514, 593
NlaIV	GGNNCC	1 cut(s)	181
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	1 cut(s)	461
Psp6I	CCWGG	4 cut(s)	30, 43, 51, 523
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	4 cut(s)	30, 43, 51, 523
PspN4I	GGNNCC	1 cut(s)	181
RsaI	GTAC	4 cut(s)	312, 494, 568, 637
RsaNI	GTAC	4 cut(s)	311, 493, 567, 636
SaqAI	TTAA	2 cut(s)	398, 441
ScrFI	CCNGG	4 cut(s)	32, 45, 53, 525
SfaNI	GCATC	1 cut(s)	223
SmlI	CTYRAG	3 cut(s)	62, 362, 617
SmoI	CTYRAG	3 cut(s)	62, 362, 617
Sse9I	AATT	3 cut(s)	260, 496, 608
SsiI	CCGC	1 cut(s)	551
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	641
StyD4I	CCNGG	4 cut(s)	30, 43, 51, 523
TaaI	ACNGT	4 cut(s)	205, 408, 475, 566
TaqI	TCGA	1 cut(s)	373
TasI	AATT	3 cut(s)	260, 496, 608
TatI	WGTACW	2 cut(s)	492, 566
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	398, 441
Tru9I	TTAA	2 cut(s)	398, 441
TscAI	CASTG	2 cut(s)	229, 306
TspDTI	ATGAA	1 cut(s)	450
TspRI	CASTG	2 cut(s)	229, 306
XapI	RAATTY	1 cut(s)	608
XbaI	TCTAGA	1 cut(s)	640
XspI	CTAG	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.