Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005826

Physical Location & Seq

Genomic Coordinates Forward (+)

1027002 .. 1029451

Gene Structure 2450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01360.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGACAACAATAACGATTTCACTTTTTGCCAGGTTGGCCCACCAGGGATTCAGGATGATCATGAGACAAATAAGCTCACTTCAGATATAGAAAGTATTACCATAAATGATGGATTGTCAAATGGCACTAGTAGTAATGAGAATAGAGGTGTTCTGTGGCAAGGTGGTTTACCAGGAGGAGCCACTTCCAAAAAACAGGAAACAGTTGGTTCTTCGTCTGTCAGCGTCATTGATGCATCATCCATGAAAAAGAAATCTGAAGTTCCAAAGCAACTAAAATCAGGTGATGCTGGAAACTCAGTCAAGCCTGCAACTCGTGCTAAAGTACCTTTTGAGAAGGGATATAGCCAAATGGATTGGCTCAAACTTACTCGAACACATCCTGACCTTGCAGGCTTAAAGGGACAGTCAAATAAGAGGCTTATTTCACTGAATGAAGTTAAACAGCACCAAAAAGGAGATTCAATGTGGACCGTTCTAAAAGGCCGCGTGTACAATTTGTCTCCATACATAAGATTTCACCCGGGAGGTGTTGATATTCTAAAGAAGGCTGTGGGAAAAGACTGCACATCGTTATTCAATAAATACCATGCTTGGGTGAATGCTGAATTTTTACTCGAGAAATGTCTCGTTGGTACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

215

Amino Acids

23.42

Weight (kDa)

9.15

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09680 AT5G09680 AT5G09680
fragaria_vesca	FvH4_7g01340 FvH4_7g01340 FvH4_7g01340 FvH4_7g01340
malus_domestica	MD02G1307800.v1.1 MD07G1017800.v1.1
prunus_persica	Prupe.2G017700_v2.0.a1 Prupe.2G019000_v2.0.a1 Prupe.2G019000_v2.0.a1
pyrus_communis	pycom02g25900 pycom07g01360
rosa_chinensis	RchiOBHm_Chr1g0317051
rosa_laevigata	RLG00000030630
rosa_multiflora	Rmu_sc0003689.1_g000022 Rmu_sc0018727.1_g000003
rosa_roxburghii	Rroxscaffold_4G00330700
rosa_rugosa	Rorug01G0014000 Rorug01G0014100 Rorug01G0014200 Rorug01G0014200
rosa_samantha	Rh1AG025200 Rh1BG022000 Rh1CG023600 Rh1DG022400
rosa_wichuraiana	Rw1G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	489
AciI	CCGC	1 cut(s)	487
AcsI	RAATTY	1 cut(s)	608
AcuI	CTGAAG	2 cut(s)	66, 279
AfaI	GTAC	3 cut(s)	327, 494, 637
AfiI	CCNNNNNNNGG	1 cut(s)	595
AgsI	TTSAA	2 cut(s)	465, 580
AhlI	ACTAGT	1 cut(s)	128
AjnI	CCWGG	3 cut(s)	30, 43, 172
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw26I	GTCTC	3 cut(s)	59, 507, 632
Ama87I	CYCGRG	2 cut(s)	523, 617
AoxI	GGCC	2 cut(s)	37, 484
ApoI	RAATTY	1 cut(s)	608
AspS9I	GGNCC	2 cut(s)	38, 471
AsuC2I	CCSGG	2 cut(s)	524, 525
AsuHPI	GGTGA	3 cut(s)	296, 512, 610
AvaI	CYCGRG	2 cut(s)	523, 617
AvaII	GGWCC	1 cut(s)	471
BauI	CACGAG	1 cut(s)	315
BccI	CCATC	1 cut(s)	104
BciT130I	CCWGG	3 cut(s)	32, 45, 174
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	2 cut(s)	524, 525
BcoDI	GTCTC	3 cut(s)	59, 507, 632
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	1 cut(s)	129
BglI	GCCNNNNNGGC	1 cut(s)	36
BisI	GCNGC	1 cut(s)	487
BlsI	GCNGC	1 cut(s)	488
Bme1390I	CCNGG	5 cut(s)	32, 45, 174, 524, 525
Bme18I	GGWCC	1 cut(s)	471
BmeT110I	CYCGRG	2 cut(s)	523, 617
BmgT120I	GGNCC	2 cut(s)	38, 471
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	5 cut(s)	32, 45, 174, 524, 525
BmsI	GCATC	3 cut(s)	223, 245, 277
BpuMI	CCSGG	2 cut(s)	524, 525
BsaJI	CCNNGG	2 cut(s)	44, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	595
BseBI	CCWGG	3 cut(s)	32, 45, 174
BseDI	CCNNGG	2 cut(s)	44, 523
BseGI	GGATG	3 cut(s)	61, 239, 379
BseLI	CCNNNNNNNGG	1 cut(s)	595
BseMII	CTCAG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	489
BshFI	GGCC	2 cut(s)	39, 486
BsiHKCI	CYCGRG	2 cut(s)	523, 617
BsiSI	CCGG	1 cut(s)	524
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	1 cut(s)	595
BsmAI	GTCTC	3 cut(s)	59, 507, 632
BsmFI	GGGAC	1 cut(s)	417
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	2 cut(s)	39, 486
BsoBI	CYCGRG	2 cut(s)	523, 617
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	1 cut(s)	487
BspANI	GGCC	2 cut(s)	39, 486
BspCNI	CTCAG	1 cut(s)	311
BspFNI	CGCG	1 cut(s)	489
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	181
BsrGI	TGTACA	1 cut(s)	492
BssECI	CCNNGG	2 cut(s)	44, 523
BssMI	GATC	1 cut(s)	58
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	3 cut(s)	32, 45, 174
Bst4CI	ACNGT	3 cut(s)	205, 408, 475
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstAUI	TGTACA	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	309, 394
BstDEI	CTNAG	1 cut(s)	298
BstF5I	GGATG	3 cut(s)	61, 239, 379
BstFNI	CGCG	1 cut(s)	489
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	3 cut(s)	59, 507, 632
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 317
BstNI	CCWGG	3 cut(s)	32, 45, 174
BstSCI	CCNGG	5 cut(s)	30, 43, 172, 522, 523
BstUI	CGCG	1 cut(s)	489
BsuRI	GGCC	2 cut(s)	39, 486
BtsCI	GGATG	3 cut(s)	61, 239, 379
BtsIMutI	CAGTG	1 cut(s)	428
Cac8I	GCNNGC	2 cut(s)	309, 394
CciI	TCATGA	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	38, 471
Cfr9I	CCCGGG	1 cut(s)	523
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	3 cut(s)	326, 493, 636
CviAII	CATG	3 cut(s)	62, 244, 590
CviQI	GTAC	3 cut(s)	326, 493, 636
DdeI	CTNAG	1 cut(s)	298
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	471
Eco57I	CTGAAG	2 cut(s)	66, 279
Eco88I	CYCGRG	2 cut(s)	523, 617
EcoRII	CCWGG	3 cut(s)	30, 43, 172
EcoT22I	ATGCAT	1 cut(s)	238
FaeI	CATG	3 cut(s)	65, 247, 593
FaiI	YATR	8 cut(s)	63, 89, 104, 245, 345, 508, 512, 591
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	3 cut(s)	61, 243, 589
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	487
FokI	GGATG	3 cut(s)	68, 226, 366
Fsp4HI	GCNGC	1 cut(s)	487
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	1 cut(s)	487
HaeIII	GGCC	2 cut(s)	39, 486
HapII	CCGG	1 cut(s)	524
HgaI	GACGC	1 cut(s)	214
Hin1II	CATG	3 cut(s)	65, 247, 593
HinfI	GANTC	2 cut(s)	49, 461
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	3 cut(s)	296, 512, 610
Hpy166II	GTNNAC	3 cut(s)	170, 471, 493
Hpy188I	TCNGA	2 cut(s)	85, 259
Hpy188III	TCNNGA	4 cut(s)	53, 62, 383, 619
Hpy8I	GTNNAC	3 cut(s)	170, 471, 493
HpyAV	CCTTC	2 cut(s)	331, 541
HpyCH4III	ACNGT	3 cut(s)	205, 408, 475
HpyCH4V	TGCA	4 cut(s)	236, 311, 392, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 317
HpyF3I	CTNAG	1 cut(s)	298
Hsp92II	CATG	3 cut(s)	65, 247, 593
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	179
LweI	GCATC	3 cut(s)	223, 245, 277
MaeI	CTAG	1 cut(s)	129
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	1 cut(s)	204
MluCI	AATT	2 cut(s)	496, 608
MnlI	CCTC	4 cut(s)	140, 170, 411, 521
Mph1103I	ATGCAT	1 cut(s)	238
MseI	TTAA	2 cut(s)	398, 441
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	5 cut(s)	32, 45, 174, 524, 525
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	3 cut(s)	32, 45, 174
MvnI	CGCG	1 cut(s)	489
MwoI	GCNNNNNNNGC	2 cut(s)	36, 317
NciI	CCSGG	2 cut(s)	524, 525
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	3 cut(s)	65, 247, 593
NlaIV	GGNNCC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	617
PagI	TCATGA	1 cut(s)	61
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	49, 461
PkrI	GCNGC	1 cut(s)	488
Psp6I	CCWGG	3 cut(s)	30, 43, 172
PspGI	CCWGG	3 cut(s)	30, 43, 172
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	38, 471
RsaI	GTAC	3 cut(s)	327, 494, 637
RsaNI	GTAC	3 cut(s)	326, 493, 636
SaqAI	TTAA	2 cut(s)	398, 441
SatI	GCNGC	1 cut(s)	487
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	2 cut(s)	38, 471
ScrFI	CCNGG	5 cut(s)	32, 45, 174, 524, 525
SetI	ASST	8 cut(s)	36, 78, 151, 166, 286, 331, 390, 532
SfaNI	GCATC	3 cut(s)	223, 245, 277
Sfr274I	CTCGAG	1 cut(s)	617
SinI	GGWCC	1 cut(s)	471
SlaI	CTCGAG	1 cut(s)	617
SmaI	CCCGGG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	2 cut(s)	496, 608
SsiI	CCGC	1 cut(s)	487
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	5 cut(s)	30, 43, 172, 522, 523
TaaI	ACNGT	3 cut(s)	205, 408, 475
TaqI	TCGA	2 cut(s)	373, 618
TasI	AATT	2 cut(s)	496, 608
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	1 cut(s)	489
TfiI	GAWTC	2 cut(s)	49, 461
Tru1I	TTAA	2 cut(s)	398, 441
Tru9I	TTAA	2 cut(s)	398, 441
TscAI	CASTG	1 cut(s)	435
TspDTI	ATGAA	2 cut(s)	260, 450
TspMI	CCCGGG	1 cut(s)	523
TspRI	CASTG	1 cut(s)	435
VpaK11BI	GGWCC	1 cut(s)	471
XapI	RAATTY	1 cut(s)	608
XhoI	CTCGAG	1 cut(s)	617
XmaI	CCCGGG	1 cut(s)	523
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.