Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005826

Physical Location & Seq

Genomic Coordinates Reverse (-)

23804088 .. 23806569

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g25900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAGAATGATAACGATTTCACTTTTTGTCAGGTTGGTCCACCAGGCAACCAGGATGGTTATGAGACAAAGAAGCTCACTTCAGATATAGAAAACATTACCCTAAAGGATGGATTGTCAAATGGCAATAGTAGTAATGAGAATAGAGGTATTCTGTGGCAAGGTGGATTACCAGGAGGAGCCGCTTCCAAAAAACAGGAAACAGTTGGTTCTTTGTCTGTCAGCATCATTGATGCATCATCCATGAAAAAGAAATCTGAAGTTCCGAAGCAACTAAAATCAGGTGATGCTGGAAAGTCAGTGAAGCCTGCAACTCGTGCTAAAGTTCCTTTTGAGAAGGGGTATAGCCAAATGGATTGGCTCAAACTTACTCGAACACATCCTGACCTTGCAGGTTTAAAGGGACAATCAAATAAGAGGCTTATTTCACTGAATGAAGTTAAACAGCACCAAAAAGGAGATTCAATGTGGACTGTTCTAAAAGGCCGTGTGTACAATTTGTCTCCATACATGAGATTTCACCCCGGAGGTGTTGATATTCTAAAGAAGGCTGTGGGAAAAGATTGCACATCTTTGTTCAATAAATACCATGCTTGGGTTAATGCTGAATTTTTACTCGAGAAATGTCTCGTTGGTACTTTAGACGATGGTGAAGGGCAACGTTCCAATCATTCGGAATCTTCGGCCCCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

232

Amino Acids

25.23

Weight (kDa)

9.1

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09680 AT5G09680 AT5G09680
fragaria_vesca	FvH4_7g01340 FvH4_7g01340 FvH4_7g01340 FvH4_7g01340
malus_domestica	MD02G1307800.v1.1 MD07G1017800.v1.1
prunus_persica	Prupe.2G017700_v2.0.a1 Prupe.2G019000_v2.0.a1 Prupe.2G019000_v2.0.a1
pyrus_communis	pycom02g25900 pycom07g01360
rosa_chinensis	RchiOBHm_Chr1g0317051
rosa_laevigata	RLG00000030630
rosa_multiflora	Rmu_sc0003689.1_g000022 Rmu_sc0018727.1_g000003
rosa_roxburghii	Rroxscaffold_4G00330700
rosa_rugosa	Rorug01G0014000 Rorug01G0014100 Rorug01G0014200 Rorug01G0014200
rosa_samantha	Rh1AG025200 Rh1BG022000 Rh1CG023600 Rh1DG022400
rosa_wichuraiana	Rw1G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	383
AciI	CCGC	1 cut(s)	183
AclI	AACGTT	1 cut(s)	661
AcsI	RAATTY	1 cut(s)	608
AcuI	CTGAAG	2 cut(s)	66, 279
AfaI	GTAC	2 cut(s)	494, 637
AfiI	CCNNNNNNNGG	1 cut(s)	595
AgsI	TTSAA	2 cut(s)	465, 580
AjnI	CCWGG	3 cut(s)	43, 51, 172
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw26I	GTCTC	3 cut(s)	59, 507, 632
Ama87I	CYCGRG	1 cut(s)	617
AoxI	GGCC	2 cut(s)	484, 684
ApoI	RAATTY	1 cut(s)	608
AspS9I	GGNCC	2 cut(s)	38, 685
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	3 cut(s)	296, 512, 662
AvaI	CYCGRG	1 cut(s)	617
AvaII	GGWCC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	315
BccI	CCATC	3 cut(s)	50, 104, 641
BceAI	ACGGC	1 cut(s)	471
BciT130I	CCWGG	3 cut(s)	45, 53, 174
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	3 cut(s)	59, 507, 632
BfuAI	ACCTGC	1 cut(s)	383
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	4 cut(s)	45, 53, 174, 525
Bme18I	GGWCC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	2 cut(s)	38, 685
BmiI	GGNNCC	2 cut(s)	181, 687
BmrFI	CCNGG	4 cut(s)	45, 53, 174, 525
BmsI	GCATC	4 cut(s)	223, 234, 245, 277
BpuMI	CCSGG	1 cut(s)	525
BsaJI	CCNNGG	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	1 cut(s)	595
BseBI	CCWGG	3 cut(s)	45, 53, 174
BseDI	CCNNGG	1 cut(s)	523
BseGI	GGATG	4 cut(s)	61, 115, 239, 379
BseLI	CCNNNNNNNGG	1 cut(s)	595
BseRI	GAGGAG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	486, 686
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	1 cut(s)	525
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	1 cut(s)	595
BsmAI	GTCTC	3 cut(s)	59, 507, 632
BsmFI	GGGAC	1 cut(s)	417
BsnI	GGCC	2 cut(s)	486, 686
BsoBI	CYCGRG	1 cut(s)	617
Bsp1407I	TGTACA	1 cut(s)	492
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	2 cut(s)	486, 686
BspHI	TCATGA	1 cut(s)	692
BspLI	GGNNCC	2 cut(s)	181, 687
BspMI	ACCTGC	1 cut(s)	383
BsrGI	TGTACA	1 cut(s)	492
BssECI	CCNNGG	1 cut(s)	523
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	3 cut(s)	45, 53, 174
Bst4CI	ACNGT	2 cut(s)	205, 475
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstAUI	TGTACA	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	309
BstF5I	GGATG	4 cut(s)	61, 115, 239, 379
BstMAI	GTCTC	3 cut(s)	59, 507, 632
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	3 cut(s)	45, 53, 174
BstSCI	CCNGG	4 cut(s)	43, 51, 172, 523
BsuRI	GGCC	2 cut(s)	486, 686
BtsCI	GGATG	4 cut(s)	61, 115, 239, 379
BtsIMutI	CAGTG	2 cut(s)	306, 428
BveI	ACCTGC	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	309
CciI	TCATGA	1 cut(s)	692
Cfr13I	GGNCC	2 cut(s)	38, 685
Csp6I	GTAC	2 cut(s)	493, 636
CviAII	CATG	4 cut(s)	244, 511, 590, 693
CviJI	RGCY	9 cut(s)	76, 182, 307, 348, 361, 421, 486, 551, 686
CviKI_1	RGCY	9 cut(s)	76, 182, 307, 348, 361, 421, 486, 551, 686
CviQI	GTAC	2 cut(s)	493, 636
DraI	TTTAAA	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	38
Eco57I	CTGAAG	2 cut(s)	66, 279
Eco88I	CYCGRG	1 cut(s)	617
EcoRII	CCWGG	3 cut(s)	43, 51, 172
EcoT22I	ATGCAT	1 cut(s)	238
FaeI	CATG	4 cut(s)	247, 514, 593, 696
FaiI	YATR	8 cut(s)	63, 89, 245, 345, 508, 512, 591, 694
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	4 cut(s)	243, 510, 589, 692
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	4 cut(s)	68, 122, 226, 366
Fsp4HI	GCNGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	486, 686
HapII	CCGG	1 cut(s)	525
Hin1II	CATG	4 cut(s)	247, 514, 593, 696
HinfI	GANTC	2 cut(s)	461, 677
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	3 cut(s)	296, 512, 662
Hpy166II	GTNNAC	3 cut(s)	41, 471, 493
Hpy188I	TCNGA	4 cut(s)	85, 259, 267, 676
Hpy188III	TCNNGA	3 cut(s)	383, 619, 693
Hpy8I	GTNNAC	3 cut(s)	41, 471, 493
HpyAV	CCTTC	3 cut(s)	331, 541, 647
HpyCH4III	ACNGT	2 cut(s)	205, 475
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	4 cut(s)	236, 311, 392, 567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	661
Hsp92II	CATG	4 cut(s)	247, 514, 593, 696
LmnI	GCTCC	1 cut(s)	179
LweI	GCATC	4 cut(s)	223, 234, 245, 277
MaeII	ACGT	1 cut(s)	661
MboII	GAAGA	1 cut(s)	672
MluCI	AATT	2 cut(s)	496, 608
MnlI	CCTC	4 cut(s)	140, 170, 411, 521
Mph1103I	ATGCAT	1 cut(s)	238
MseI	TTAA	3 cut(s)	398, 441, 600
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	4 cut(s)	45, 53, 174, 525
MvaI	CCWGG	3 cut(s)	45, 53, 174
MwoI	GCNNNNNNNGC	1 cut(s)	317
NciI	CCSGG	1 cut(s)	525
NlaIII	CATG	4 cut(s)	247, 514, 593, 696
NlaIV	GGNNCC	2 cut(s)	181, 687
NsiI	ATGCAT	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	617
PagI	TCATGA	1 cut(s)	692
PfeI	GAWTC	2 cut(s)	461, 677
PkrI	GCNGC	1 cut(s)	184
Psp1406I	AACGTT	1 cut(s)	661
Psp6I	CCWGG	3 cut(s)	43, 51, 172
PspGI	CCWGG	3 cut(s)	43, 51, 172
PspN4I	GGNNCC	2 cut(s)	181, 687
PspPI	GGNCC	2 cut(s)	38, 685
RsaI	GTAC	2 cut(s)	494, 637
RsaNI	GTAC	2 cut(s)	493, 636
SaqAI	TTAA	3 cut(s)	398, 441, 600
SatI	GCNGC	1 cut(s)	183
Sau96I	GGNCC	2 cut(s)	38, 685
ScrFI	CCNGG	4 cut(s)	45, 53, 174, 525
SetI	ASST	9 cut(s)	36, 78, 151, 166, 286, 390, 397, 532, 664
SfaNI	GCATC	4 cut(s)	223, 234, 245, 277
Sfr274I	CTCGAG	1 cut(s)	617
SinI	GGWCC	1 cut(s)	38
SlaI	CTCGAG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	2 cut(s)	496, 608
SsiI	CCGC	1 cut(s)	183
StyD4I	CCNGG	4 cut(s)	43, 51, 172, 523
TaaI	ACNGT	2 cut(s)	205, 475
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	2 cut(s)	373, 618
TasI	AATT	2 cut(s)	496, 608
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	2 cut(s)	461, 677
Tru1I	TTAA	3 cut(s)	398, 441, 600
Tru9I	TTAA	3 cut(s)	398, 441, 600
TscAI	CASTG	2 cut(s)	306, 435
TspDTI	ATGAA	2 cut(s)	260, 450
TspRI	CASTG	2 cut(s)	306, 435
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	1 cut(s)	608
XhoI	CTCGAG	1 cut(s)	617
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.