Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003689.1

Orthogroup ID

OG0005826

Physical Location & Seq

Genomic Coordinates Reverse (-)

107756 .. 110909

Gene Structure 3154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003689.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgttttatggtaatatttgtttggcaggaaagattgctcgaaataatctgggaacttcattcagcttcggaatggacactgataacgatttcacgttttgccaggttggctcacctggaaaccaggatgctctcgaaacaaagaagcttgcttcagatatagatgctattaacataaacgatggattgtcgaatggcactattagcaatcagaatagtggttcaatgtggaaaggtggagtgccaaggggtgccacctctgaaaaacagaaaacagttggatctttgtctgtcactgttattgatgcgtcatccacgaacgaatactcacaatttccaaaaaaagtaccatcaggagatggtggaaagtcagtgaagcctgcacctcgtgccaaagttccttttgagaaggggtatagccaaatggattggcttaagcttactcgaacacatcctgaccttgcaggtttgaagggacagtcaaataagaggcttatttccatgaatgaagttaaacagcaccaaaaaggggattctatgtggactgttctaaaaggccgtgtgtacaatctatctccatacatgagatttcaccctggaggtgttgatattctaaagaaggctgtggggaaagactgcacttctttattcagtatcctttatatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

222

Amino Acids

24.1

Weight (kDa)

9.44

Isoelectric Point (pI)

28.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09680 AT5G09680 AT5G09680
fragaria_vesca	FvH4_7g01340 FvH4_7g01340 FvH4_7g01340 FvH4_7g01340
malus_domestica	MD02G1307800.v1.1 MD07G1017800.v1.1
prunus_persica	Prupe.2G017700_v2.0.a1 Prupe.2G019000_v2.0.a1 Prupe.2G019000_v2.0.a1
pyrus_communis	pycom02g25900 pycom07g01360
rosa_chinensis	RchiOBHm_Chr1g0317051
rosa_laevigata	RLG00000030630
rosa_multiflora	Rmu_sc0003689.1_g000022 Rmu_sc0018727.1_g000003
rosa_roxburghii	Rroxscaffold_4G00330700
rosa_rugosa	Rorug01G0014000 Rorug01G0014100 Rorug01G0014200 Rorug01G0014200
rosa_samantha	Rh1AG025200 Rh1BG022000 Rh1CG023600 Rh1DG022400
rosa_wichuraiana	Rw1G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	455
AccB1I	GGYRCC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	389
AfaI	GTAC	2 cut(s)	348, 566
AfiI	CCNNNNNNNGG	1 cut(s)	529
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	2 cut(s)	225, 472
AjnI	CCWGG	4 cut(s)	102, 115, 123, 595
AluBI	AGCT	3 cut(s)	66, 148, 439
AluI	AGCT	3 cut(s)	66, 148, 439
AlwI	GGATC	1 cut(s)	289
AoxI	GGCC	1 cut(s)	556
AsuHPI	GGTGA	2 cut(s)	105, 584
BanI	GGYRCC	1 cut(s)	251
BauI	CACGAG	1 cut(s)	387
BccI	CCATC	3 cut(s)	176, 353, 358
BceAI	ACGGC	1 cut(s)	543
BciT130I	CCWGG	4 cut(s)	104, 117, 125, 597
BciVI	GTATCC	1 cut(s)	665
BfrI	CTTAAG	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	455
BfuI	GTATCC	1 cut(s)	665
BglI	GCCNNNNNGGC	1 cut(s)	108
Bme1390I	CCNGG	4 cut(s)	104, 117, 125, 597
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	4 cut(s)	104, 117, 125, 597
BmsI	GCATC	3 cut(s)	118, 154, 295
BpmI	CTGGAG	1 cut(s)	618
BsaJI	CCNNGG	2 cut(s)	245, 595
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
BseBI	CCWGG	4 cut(s)	104, 117, 125, 597
BseDI	CCNNGG	2 cut(s)	245, 595
BseGI	GGATG	3 cut(s)	133, 311, 451
BseLI	CCNNNNNNNGG	1 cut(s)	529
BsgI	GTGCAG	2 cut(s)	366, 622
BshFI	GGCC	1 cut(s)	558
BshNI	GGYRCC	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	1 cut(s)	558
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	1 cut(s)	281
BspANI	GGCC	1 cut(s)	558
BspLI	GGNNCC	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	289
BspT107I	GGYRCC	1 cut(s)	251
BspTI	CTTAAG	1 cut(s)	434
BsrGI	TGTACA	1 cut(s)	564
BssECI	CCNNGG	2 cut(s)	245, 595
BssMI	GATC	1 cut(s)	281
BssSI	CACGAG	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	387
Bst2UI	CCWGG	4 cut(s)	104, 117, 125, 597
Bst4CI	ACNGT	4 cut(s)	277, 298, 480, 547
BstAFI	CTTAAG	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstAUI	TGTACA	1 cut(s)	564
BstC8I	GCNNGC	2 cut(s)	150, 381
BstF5I	GGATG	3 cut(s)	133, 311, 451
BstKTI	GATC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	281
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 204, 389
BstNI	CCWGG	4 cut(s)	104, 117, 125, 597
BstSCI	CCNGG	4 cut(s)	102, 115, 123, 595
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	665
BsuRI	GGCC	1 cut(s)	558
BtsCI	GGATG	3 cut(s)	133, 311, 451
BtsIMutI	CAGTG	3 cut(s)	78, 294, 378
BveI	ACCTGC	1 cut(s)	455
Cac8I	GCNNGC	2 cut(s)	150, 381
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	2 cut(s)	347, 565
CviAII	CATG	2 cut(s)	502, 583
CviQI	GTAC	2 cut(s)	347, 565
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
DraIII	CACNNNGTG	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	138
EcoRII	CCWGG	4 cut(s)	102, 115, 123, 595
EcoT14I	CCWWGG	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	2 cut(s)	505, 586
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	2 cut(s)	501, 582
FokI	GGATG	3 cut(s)	140, 298, 438
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	1 cut(s)	558
HgaI	GACGC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	505, 586
HindIII	AAGCTT	2 cut(s)	146, 437
HinfI	GANTC	1 cut(s)	533
HphI	GGTGA	2 cut(s)	105, 584
Hpy166II	GTNNAC	2 cut(s)	543, 565
Hpy188I	TCNGA	4 cut(s)	71, 157, 213, 262
Hpy188III	TCNNGA	3 cut(s)	134, 354, 455
Hpy8I	GTNNAC	2 cut(s)	543, 565
HpyAV	CCTTC	3 cut(s)	403, 466, 613
HpyCH4III	ACNGT	4 cut(s)	277, 298, 480, 547
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	3 cut(s)	383, 464, 639
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 204, 389
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	505, 586
Kzo9I	GATC	1 cut(s)	281
LweI	GCATC	3 cut(s)	118, 154, 295
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MflI	RGATCY	1 cut(s)	281
MluCI	AATT	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	4 cut(s)	268, 396, 483, 593
MseI	TTAA	3 cut(s)	171, 435, 513
MspCI	CTTAAG	1 cut(s)	434
MspR9I	CCNGG	4 cut(s)	104, 117, 125, 597
MvaI	CCWGG	4 cut(s)	104, 117, 125, 597
MwoI	GCNNNNNNNGC	3 cut(s)	108, 204, 389
NdeII	GATC	1 cut(s)	281
NlaIII	CATG	2 cut(s)	505, 586
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	533
Psp6I	CCWGG	4 cut(s)	102, 115, 123, 595
PspGI	CCWGG	4 cut(s)	102, 115, 123, 595
PspN4I	GGNNCC	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	281
RsaI	GTAC	2 cut(s)	348, 566
RsaNI	GTAC	2 cut(s)	347, 565
SaqAI	TTAA	3 cut(s)	171, 435, 513
Sau3AI	GATC	1 cut(s)	281
ScrFI	CCNGG	4 cut(s)	104, 117, 125, 597
SfaNI	GCATC	3 cut(s)	118, 154, 295
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	1 cut(s)	332
SspI	AATATT	1 cut(s)	16
StyD4I	CCNGG	4 cut(s)	102, 115, 123, 595
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	4 cut(s)	277, 298, 480, 547
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	4 cut(s)	40, 135, 191, 445
TasI	AATT	1 cut(s)	332
TatI	WGTACW	1 cut(s)	564
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	3 cut(s)	171, 435, 513
Tru9I	TTAA	3 cut(s)	171, 435, 513
TscAI	CASTG	3 cut(s)	85, 301, 378
TseFI	GTSAC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	48, 518, 522
TspRI	CASTG	3 cut(s)	85, 301, 378
Vha464I	CTTAAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.