Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005826

Physical Location & Seq

Genomic Coordinates Reverse (-)

2460229 .. 2462936

Gene Structure 2708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0014100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTGGAGTTTTCGCAATTTGCAGGCTGCAGATTCTCAGGTTGTTTCCGACTATGTGAGGCACTTTCTTCATCAGCACACCGTTCAGCTATGGCAGCCTGCTACTGTCAAAGTTGTTGCTAATCTCATCAAGCTACTGTCATATGGCAACAAGAATATGTTGCAAACTGGGTTGATTGTTGGAGGCTGGGACAAGTATGAAGGGGGAAAGATTTATGGAGTTCCGCTTGGCGGCACAGTCATAAAGGTGCCATTTGCCATTGGAGGTTCTGGCTCCAGTTACTTGTATGGATTCTTTGATCAAGCATGGAGAGAAGGAATGACCAAGGACGAAGCGGAGGGAGAAACCTTAAAGGTGCTCAAAGCTCTAGAAGCAGTCGTGTCTCACCTGAGGAAGTTTTTGGTTGATCATAGTGTTCTTCCTCTTTTTGAGAAAACTTTTCTCAAGAACGCCAACCAGATCCCTGGGCTGACAAGTCGTTGCTTCATACTGCAACTCAGCCGTGAGTCGCAATTGGAATCACAACTCCCATCCTCTGGACTTTCCATTTATGGACAAGAGGCTTCTCTTTCTTCAATACGTTCTTCAGGACTTGGCCGTCCTGGTGCTCCTATTGTTACTCAGGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATGGGCAAGCCTGATAAGGTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0022622 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

239

Amino Acids

26.31

Weight (kDa)

9.1

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	9 - 123	8.4e-22	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09680 AT5G09680 AT5G09680
fragaria_vesca	FvH4_7g01340 FvH4_7g01340 FvH4_7g01340 FvH4_7g01340
malus_domestica	MD02G1307800.v1.1 MD07G1017800.v1.1
prunus_persica	Prupe.2G017700_v2.0.a1 Prupe.2G019000_v2.0.a1 Prupe.2G019000_v2.0.a1
pyrus_communis	pycom02g25900 pycom07g01360
rosa_chinensis	RchiOBHm_Chr1g0317051
rosa_laevigata	RLG00000030630
rosa_multiflora	Rmu_sc0003689.1_g000022 Rmu_sc0018727.1_g000003
rosa_roxburghii	Rroxscaffold_4G00330700
rosa_rugosa	Rorug01G0014000 Rorug01G0014100 Rorug01G0014200 Rorug01G0014200
rosa_samantha	Rh1AG025200 Rh1BG022000 Rh1CG023600 Rh1DG022400
rosa_wichuraiana	Rw1G001750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	597
AccB1I	GGYRCC	1 cut(s)	247
AccB7I	CCANNNNNTGG	1 cut(s)	536
AciI	CCGC	3 cut(s)	224, 231, 335
AclWI	GGATC	1 cut(s)	454
AcoI	YGGCCR	1 cut(s)	595
AcuI	CTGAAG	1 cut(s)	570
AfiI	CCNNNNNNNGG	2 cut(s)	230, 536
AgsI	TTSAA	1 cut(s)	576
AjnI	CCWGG	2 cut(s)	463, 601
AluBI	AGCT	4 cut(s)	88, 133, 365, 673
AluI	AGCT	4 cut(s)	88, 133, 365, 673
Alw21I	GWGCWC	2 cut(s)	360, 610
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	1 cut(s)	454
AoxI	GGCC	2 cut(s)	595, 625
ApeKI	GCWGC	3 cut(s)	26, 94, 656
AspS9I	GGNCC	1 cut(s)	625
AsuHPI	GGTGA	1 cut(s)	377
AxyI	CCTNAGG	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	247
Bbv12I	GWGCWC	2 cut(s)	360, 610
BbvI	GCAGC	3 cut(s)	13, 106, 643
BccI	CCATC	2 cut(s)	538, 688
BceAI	ACGGC	2 cut(s)	486, 582
BciT130I	CCWGG	2 cut(s)	465, 603
BclI	TGATCA	2 cut(s)	298, 406
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	3 cut(s)	368, 674, 718
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	4 cut(s)	27, 95, 232, 657
BlsI	GCNGC	4 cut(s)	28, 96, 233, 658
Bme1390I	CCNGG	2 cut(s)	465, 603
BmgT120I	GGNCC	1 cut(s)	625
BmiI	GGNNCC	2 cut(s)	249, 274
BmrFI	CCNGG	2 cut(s)	465, 603
BmrI	ACTGGG	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	428
BsaJI	CCNNGG	4 cut(s)	324, 463, 464, 628
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 536
Bse1I	ACTGG	2 cut(s)	172, 276
Bse21I	CCTNAGG	1 cut(s)	389
BseBI	CCWGG	2 cut(s)	465, 603
BseDI	CCNNGG	4 cut(s)	324, 463, 464, 628
BseGI	GGATG	2 cut(s)	530, 699
BseLI	CCNNNNNNNGG	2 cut(s)	230, 536
BseMII	CTCAG	4 cut(s)	50, 380, 511, 635
BseNI	ACTGG	2 cut(s)	172, 276
BseXI	GCAGC	3 cut(s)	13, 106, 643
BseYI	CCCAGC	1 cut(s)	186
BshFI	GGCC	2 cut(s)	597, 627
BshNI	GGYRCC	1 cut(s)	247
BsiHKAI	GWGCWC	2 cut(s)	360, 610
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	230, 536
BsmAI	GTCTC	1 cut(s)	387
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	597, 627
Bsp1286I	GDGCHC	2 cut(s)	360, 610
Bsp143I	GATC	4 cut(s)	298, 406, 459, 714
BspACI	CCGC	3 cut(s)	224, 231, 335
BspANI	GGCC	2 cut(s)	597, 627
BspCNI	CTCAG	4 cut(s)	49, 381, 510, 634
BspLI	GGNNCC	2 cut(s)	249, 274
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	1 cut(s)	454
BspQI	GCTCTTC	1 cut(s)	663
BspT107I	GGYRCC	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	172, 276
BssECI	CCNNGG	4 cut(s)	324, 463, 464, 628
BssMI	GATC	4 cut(s)	298, 406, 459, 714
BssT1I	CCWWGG	2 cut(s)	324, 628
Bst2UI	CCWGG	2 cut(s)	465, 603
Bst4CI	ACNGT	4 cut(s)	82, 106, 138, 238
Bst6I	CTCTTC	1 cut(s)	663
BstC8I	GCNNGC	3 cut(s)	24, 99, 701
BstDEI	CTNAG	4 cut(s)	36, 389, 497, 621
BstF5I	GGATG	2 cut(s)	530, 699
BstKTI	GATC	4 cut(s)	301, 409, 462, 717
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	4 cut(s)	298, 406, 459, 714
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 371
BstNI	CCWGG	2 cut(s)	465, 603
BstSCI	CCNGG	2 cut(s)	463, 601
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	3 cut(s)	13, 106, 643
BstX2I	RGATCY	1 cut(s)	459
BstXI	CCANNNNNNTGG	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	459
Bsu36I	CCTNAGG	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	597, 627
BtsCI	GGATG	2 cut(s)	530, 699
Cac8I	GCNNGC	3 cut(s)	24, 99, 701
Cfr13I	GGNCC	1 cut(s)	625
CviAII	CATG	1 cut(s)	306
DdeI	CTNAG	4 cut(s)	36, 389, 497, 621
DpnI	GATC	4 cut(s)	300, 408, 461, 716
DpnII	GATC	4 cut(s)	298, 406, 459, 714
DrdI	GACNNNNNNGTC	1 cut(s)	597
DseDI	GACNNNNNNGTC	1 cut(s)	597
EaeI	YGGCCR	1 cut(s)	595
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
Eco130I	CCWWGG	2 cut(s)	324, 628
Eco57I	CTGAAG	1 cut(s)	570
Eco81I	CCTNAGG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	625
EcoRII	CCWGG	2 cut(s)	463, 601
EcoT14I	CCWWGG	2 cut(s)	324, 628
ErhI	CCWWGG	2 cut(s)	324, 628
FaeI	CATG	1 cut(s)	309
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	1 cut(s)	305
FauNDI	CATATG	1 cut(s)	142
FbaI	TGATCA	2 cut(s)	298, 406
Fnu4HI	GCNGC	4 cut(s)	27, 95, 232, 657
FokI	GGATG	2 cut(s)	517, 706
Fsp4HI	GCNGC	4 cut(s)	27, 95, 232, 657
FspBI	CTAG	3 cut(s)	368, 674, 718
GluI	GCNGC	4 cut(s)	27, 95, 232, 657
GsaI	CCCAGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	259
HaeIII	GGCC	2 cut(s)	597, 627
Hin1II	CATG	1 cut(s)	309
HinfI	GANTC	4 cut(s)	32, 291, 506, 518
HphI	GGTGA	1 cut(s)	377
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	4 cut(s)	368, 445, 537, 588
HpyAV	CCTTC	2 cut(s)	194, 308
HpyCH4III	ACNGT	4 cut(s)	82, 106, 138, 238
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	4 cut(s)	22, 29, 163, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 371
HpyF3I	CTNAG	4 cut(s)	36, 389, 497, 621
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	1 cut(s)	309
Ksp22I	TGATCA	2 cut(s)	298, 406
Kzo9I	GATC	4 cut(s)	298, 406, 459, 714
LguI	GCTCTTC	1 cut(s)	663
LmnI	GCTCC	2 cut(s)	278, 613
Lsp1109I	GCAGC	3 cut(s)	13, 106, 643
MaeI	CTAG	3 cut(s)	368, 674, 718
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	2 cut(s)	278, 616
MalI	GATC	4 cut(s)	300, 408, 461, 716
MboI	GATC	4 cut(s)	298, 406, 459, 714
MboII	GAAGA	5 cut(s)	59, 410, 564, 576, 680
MfeI	CAATTG	1 cut(s)	512
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	2 cut(s)	360, 610
MluCI	AATT	2 cut(s)	16, 512
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	2 cut(s)	72, 160
MnlI	CCTC	8 cut(s)	51, 176, 257, 331, 384, 432, 544, 553
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	465, 603
MunI	CAATTG	1 cut(s)	512
MvaI	CCWGG	2 cut(s)	465, 603
MwoI	GCNNNNNNNGC	2 cut(s)	94, 371
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	4 cut(s)	298, 406, 459, 714
NlaIII	CATG	1 cut(s)	309
NlaIV	GGNNCC	2 cut(s)	249, 274
PasI	CCCWGGG	1 cut(s)	464
PciSI	GCTCTTC	1 cut(s)	663
PfeI	GAWTC	3 cut(s)	32, 291, 518
PflMI	CCANNNNNTGG	1 cut(s)	536
PkrI	GCNGC	4 cut(s)	28, 96, 233, 658
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
Psp6I	CCWGG	2 cut(s)	463, 601
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	2 cut(s)	463, 601
PspN4I	GGNNCC	2 cut(s)	249, 274
PspPI	GGNCC	1 cut(s)	625
PstI	CTGCAG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	459
RseI	CAYNNNNRTG	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	663
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	4 cut(s)	27, 95, 232, 657
Sau3AI	GATC	4 cut(s)	298, 406, 459, 714
Sau96I	GGNCC	1 cut(s)	625
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	2 cut(s)	465, 603
SduI	GDGCHC	2 cut(s)	360, 610
SfcI	CTRYAG	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	2 cut(s)	16, 512
SsiI	CCGC	3 cut(s)	224, 231, 335
SspI	AATATT	1 cut(s)	650
SspMI	CTAG	3 cut(s)	368, 674, 718
StyD4I	CCNGG	2 cut(s)	463, 601
StyI	CCWWGG	2 cut(s)	324, 628
TaaI	ACNGT	4 cut(s)	82, 106, 138, 238
TaiI	ACGT	1 cut(s)	583
TasI	AATT	2 cut(s)	16, 512
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	3 cut(s)	32, 291, 518
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TseI	GCWGC	3 cut(s)	26, 94, 656
TspDTI	ATGAA	4 cut(s)	59, 213, 475, 681
Van91I	CCANNNNNTGG	1 cut(s)	536
XbaI	TCTAGA	1 cut(s)	367
XspI	CTAG	3 cut(s)	368, 674, 718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.