Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010027

Physical Location & Seq

Genomic Coordinates Reverse (-)

1952221 .. 1952475

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G019800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

AGCAAGATGGGGATCAAGCTGGTGGAAATTTTGGATCAGGGAGTGAGAATCGCTGCCAGATCTTATTCTCATTGCCCTCAGACCAGCCGCATGTACTACCATCCGCCTCCGCCCAGCCATGAAGACCACCACAACCTCCACAACTTTGGCGGCGGCGCCACCACTTCCGGCGGCGATGCTGCGACGGCCCAGATGCGGTGTTTTGGTCCCAAGAAGGCTGATACCAATGAGTTTATTATTCTTTTCTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.2

Weight (kDa)

7.86

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57450
malus_domestica	MD02G1307300.v1.1
prunus_persica	Prupe.2G019800_v2.0.a1 Prupe.7G061500_v2.0.a1 Prupe.8G033700_v2.0.a1
pyrus_communis	pycom02g25850 pycom07g01410 pycom12g06330 pycom14g06130
rosa_chinensis	RchiOBHm_Chr1g0317121 RchiOBHm_Chr3g0482161 RchiOBHm_Chr3g0482181
rosa_laevigata	RLG00000030625
rosa_roxburghii	Rroxscaffold_4G00330640 Rroxscaffold_6G00399540 Rroxscaffold_6G00399670 Rroxscaffold_6G00400020
rosa_rugosa	Rorug01G0014900 Rorug03G0195500
rosa_wichuraiana	Rw1G001800 Rw3G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	7 cut(s)	88, 104, 110, 150, 153, 171, 196
AclWI	GGATC	2 cut(s)	20, 42
AcsI	RAATTY	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	195
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
AlwI	GGATC	2 cut(s)	20, 42
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	53, 179
ApoI	RAATTY	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	2 cut(s)	187, 206
AvaII	GGWCC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	40, 166
BccI	CCATC	1 cut(s)	108
BceAI	ACGGC	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	159
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	6 cut(s)	54, 88, 151, 154, 172, 180
BlsI	GCNGC	6 cut(s)	55, 89, 152, 155, 173, 181
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	187, 206
BmiI	GGNNCC	2 cut(s)	157, 208
BmsI	GCATC	2 cut(s)	166, 183
BpiI	GAAGAC	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	70
Bse8I	GATNNNNATC	1 cut(s)	11
BseGI	GGATG	1 cut(s)	100
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	40, 166
BseYI	CCCAGC	1 cut(s)	113
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	188
Bsp143I	GATC	3 cut(s)	12, 34, 59
BspACI	CCGC	7 cut(s)	88, 104, 110, 150, 153, 171, 196
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	157, 208
BspPI	GGATC	2 cut(s)	20, 42
BspT107I	GGYRCC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	70
BssMI	GATC	3 cut(s)	12, 34, 59
BssNI	GRCGYC	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	3 cut(s)	15, 37, 62
BstMBI	GATC	3 cut(s)	12, 34, 59
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNSI	RCATGY	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	40, 166
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	59
BstXI	CCANNNNNNTGG	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	188
BtgZI	GCGATG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	100
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	187, 206
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	2 cut(s)	91, 119
CviJI	RGCY	5 cut(s)	19, 87, 117, 188, 218
CviKI_1	RGCY	5 cut(s)	19, 87, 117, 188, 218
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	78
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	3 cut(s)	14, 36, 61
DpnII	GATC	3 cut(s)	12, 34, 59
EciI	GGCGGA	2 cut(s)	93, 99
Eco47I	GGWCC	1 cut(s)	206
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
FaeI	CATG	2 cut(s)	94, 122
FaiI	YATR	2 cut(s)	92, 120
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	2 cut(s)	90, 118
Fnu4HI	GCNGC	6 cut(s)	54, 88, 151, 154, 172, 180
FokI	GGATG	1 cut(s)	87
Fsp4HI	GCNGC	6 cut(s)	54, 88, 151, 154, 172, 180
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	6 cut(s)	54, 88, 151, 154, 172, 180
GsaI	CCCAGC	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	1 cut(s)	168
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	94, 122
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	1 cut(s)	168
Hpy188I	TCNGA	1 cut(s)	81
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	78
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	94, 122
HspAI	GCGC	1 cut(s)	156
KasI	GGCGCC	1 cut(s)	155
Kzo9I	GATC	3 cut(s)	12, 34, 59
LpnPI	CCDG	7 cut(s)	5, 23, 70, 97, 127, 181, 203
Lsp1109I	GCAGC	2 cut(s)	40, 166
LweI	GCATC	2 cut(s)	166, 183
MalI	GATC	3 cut(s)	14, 36, 61
MboI	GATC	3 cut(s)	12, 34, 59
MboII	GAAGA	1 cut(s)	134
MflI	RGATCY	1 cut(s)	59
MluCI	AATT	1 cut(s)	27
Mly113I	GGCGCC	1 cut(s)	156
MnlI	CCTC	3 cut(s)	87, 117, 146
MspI	CCGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	185
NarI	GGCGCC	1 cut(s)	156
NdeII	GATC	3 cut(s)	12, 34, 59
NlaIII	CATG	2 cut(s)	94, 122
NlaIV	GGNNCC	2 cut(s)	157, 208
NspI	RCATGY	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	6 cut(s)	55, 89, 152, 155, 173, 181
PluTI	GGCGCC	1 cut(s)	159
PspFI	CCCAGC	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	157, 208
PspPI	GGNCC	2 cut(s)	187, 206
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SatI	GCNGC	6 cut(s)	54, 88, 151, 154, 172, 180
Sau3AI	GATC	3 cut(s)	12, 34, 59
Sau96I	GGNCC	2 cut(s)	187, 206
SetI	ASST	2 cut(s)	21, 138
SfaNI	GCATC	2 cut(s)	166, 183
SfoI	GGCGCC	1 cut(s)	157
SinI	GGWCC	1 cut(s)	206
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	7 cut(s)	88, 104, 110, 150, 153, 171, 196
SspDI	GGCGCC	1 cut(s)	155
TasI	AATT	1 cut(s)	27
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	4 cut(s)	90, 153, 156, 174
TfiI	GAWTC	1 cut(s)	48
TseI	GCWGC	2 cut(s)	53, 179
TspDTI	ATGAA	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	27
XceI	RCATGY	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.