Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010027

Physical Location & Seq

Genomic Coordinates Reverse (-)

1054444 .. 1054710

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGGGATAAAGCTGGTGGAGATTTTGGACCAAGGAGTCAGAATCGTCGCCAGATCTTATTCTCATTGCCCCCAGACCAGCCGCATGTACTACCATCCTCCTCCACCGAGCCATGAAGACCACCACCACGGCCACCACAATCTTCACAGCGGCGGCGCCACCAGTTCCGGCGGCGGCGATGTTGTGATGGCTCAGATGCGTTTTTCCGGTGCCAAGGCAGCGGTTGCTGGTTCTGATACCAATGAATTTATTTTTTTCTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

9.51

Weight (kDa)

6.74

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57450
malus_domestica	MD02G1307300.v1.1
prunus_persica	Prupe.2G019800_v2.0.a1 Prupe.7G061500_v2.0.a1 Prupe.8G033700_v2.0.a1
pyrus_communis	pycom02g25850 pycom07g01410 pycom12g06330 pycom14g06130
rosa_chinensis	RchiOBHm_Chr1g0317121 RchiOBHm_Chr3g0482161 RchiOBHm_Chr3g0482181
rosa_laevigata	RLG00000030625
rosa_roxburghii	Rroxscaffold_4G00330640 Rroxscaffold_6G00399540 Rroxscaffold_6G00399670 Rroxscaffold_6G00400020
rosa_rugosa	Rorug01G0014900 Rorug03G0195500
rosa_wichuraiana	Rw1G001800 Rw3G022070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	35
AccB1I	GGYRCC	2 cut(s)	155, 209
AciI	CCGC	6 cut(s)	82, 150, 153, 171, 174, 221
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	89
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	28
BanI	GGYRCC	2 cut(s)	155, 209
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	2 cut(s)	102, 181
BceAI	ACGGC	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	159
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	6 cut(s)	82, 151, 154, 172, 175, 219
BlsI	GCNGC	6 cut(s)	83, 152, 155, 173, 176, 220
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	2 cut(s)	157, 211
BmsI	GCATC	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	31, 127, 213
BsaWI	WCCGGW	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	31, 127, 213
BseGI	GGATG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	230
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	2 cut(s)	155, 209
BsiSI	CCGG	2 cut(s)	168, 207
BsnI	GGCC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	53
BspACI	CCGC	6 cut(s)	82, 150, 153, 171, 174, 221
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	157, 211
BspT107I	GGYRCC	2 cut(s)	155, 209
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	3 cut(s)	31, 127, 213
BssMI	GATC	1 cut(s)	53
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	2 cut(s)	31, 213
BstACI	GRCGYC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 224
BstNSI	RCATGY	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	127
BtgZI	GCGATG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	2 cut(s)	85, 113
CviJI	RGCY	5 cut(s)	13, 81, 111, 132, 191
CviKI_1	RGCY	5 cut(s)	13, 81, 111, 132, 191
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	192
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
DrdI	GACNNNNNNGTC	1 cut(s)	35
DseDI	GACNNNNNNGTC	1 cut(s)	35
EaeI	YGGCCR	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	31, 213
Eco47I	GGWCC	1 cut(s)	28
EcoT14I	CCWWGG	2 cut(s)	31, 213
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	31, 213
FaeI	CATG	2 cut(s)	88, 116
FaiI	YATR	2 cut(s)	86, 114
FatI	CATG	2 cut(s)	84, 112
Fnu4HI	GCNGC	6 cut(s)	82, 151, 154, 172, 175, 219
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	6 cut(s)	82, 151, 154, 172, 175, 219
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	6 cut(s)	82, 151, 154, 172, 175, 219
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	2 cut(s)	168, 207
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	88, 116
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	2 cut(s)	36, 42
HpaII	CCGG	2 cut(s)	168, 207
Hpy188I	TCNGA	3 cut(s)	41, 195, 235
Hpy99I	CGWCG	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 224
HpyF3I	CTNAG	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	88, 116
HspAI	GCGC	1 cut(s)	156
KasI	GGCGCC	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	53
LpnPI	CCDG	7 cut(s)	64, 86, 91, 175, 181, 213, 220
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	1 cut(s)	186
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MboII	GAAGA	2 cut(s)	128, 134
MflI	RGATCY	1 cut(s)	53
MluCI	AATT	1 cut(s)	245
Mly113I	GGCGCC	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	2 cut(s)	108, 111
MspA1I	CMGCKG	2 cut(s)	150, 221
MspI	CCGG	2 cut(s)	168, 207
MwoI	GCNNNNNNNGC	2 cut(s)	218, 224
NarI	GGCGCC	1 cut(s)	156
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	2 cut(s)	88, 116
NlaIV	GGNNCC	2 cut(s)	157, 211
NspI	RCATGY	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	6 cut(s)	83, 152, 155, 173, 176, 220
PleI	GAGTC	1 cut(s)	44
PluTI	GGCGCC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	157, 211
PspPI	GGNCC	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SatI	GCNGC	6 cut(s)	82, 151, 154, 172, 175, 219
Sau3AI	GATC	1 cut(s)	53
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	45
SetI	ASST	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	186
SfoI	GGCGCC	1 cut(s)	157
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	1 cut(s)	245
SsiI	CCGC	6 cut(s)	82, 150, 153, 171, 174, 221
SspDI	GGCGCC	1 cut(s)	155
StyI	CCWWGG	2 cut(s)	31, 213
TasI	AATT	1 cut(s)	245
TatI	WGTACW	1 cut(s)	87
TauI	GCSGC	5 cut(s)	84, 153, 156, 174, 177
TfiI	GAWTC	1 cut(s)	42
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	2 cut(s)	129, 258
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.