RchiOBHm_Chr3g0482161

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010027
Physical Location & Seq
Reverse (-)
28243325 .. 28243878
554 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44706

Sequence Viewer

Length: 237 bp
ATGGCGAAGTGGGTGGAATTATTGGATACAGGGGTCAGAATGGCAGCCAGGTTTCATTCTCACTGCCCACAAACCGGACGTTTGTACTACCACCCTCCCTCTTCCAACTCCTCCTCTCAAGACGATCATCACCGGCAGGCGCCGCTTTTCGAGGCCATGATGAGCGGTTGCGCTGTCAATGCAGCTAAGGAGGCCAGCAGCACCAATAACAATGAGTTCATATATGCTATATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.7

Weight (kDa)

6.48

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 139
AccBSI CCGCTC 1 cut(s) 165
AciI CCGC 2 cut(s) 143, 165
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 74
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
AoxI GGCC 2 cut(s) 153, 192
ApeKI GCWGC 3 cut(s) 44, 182, 198
AspLEI GCGC 2 cut(s) 142, 173
AsuHPI GGTGA 1 cut(s) 122
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BanI GGYRCC 1 cut(s) 139
BbvI GCAGC 3 cut(s) 56, 194, 210
BciT130I CCWGG 1 cut(s) 49
BciVI GTATCC 1 cut(s) 19
BfoI RGCGCY 1 cut(s) 143
BfuI GTATCC 1 cut(s) 19
BisI GCNGC 4 cut(s) 45, 143, 183, 199
BlsI GCNGC 4 cut(s) 46, 144, 184, 200
Bme1390I CCNGG 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 49
Bpu10I CCTNAGC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse118I RCCGGY 1 cut(s) 132
BseBI CCWGG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 74
BseRI GAGGAG 2 cut(s) 100, 103
BseXI GCAGC 3 cut(s) 56, 194, 210
BshFI GGCC 2 cut(s) 155, 194
BshNI GGYRCC 1 cut(s) 139
BsiSI CCGG 2 cut(s) 75, 133
BslI CCNNNNNNNGG 1 cut(s) 74
BsnI GGCC 2 cut(s) 155, 194
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 2 cut(s) 143, 165
BspANI GGCC 2 cut(s) 155, 194
BspLI GGNNCC 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 139
BsrBI CCGCTC 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 132
BssMI GATC 1 cut(s) 124
BssNI GRCGYC 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 138, 196
BstDEI CTNAG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 2 cut(s) 142, 173
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 3 cut(s) 142, 179, 191
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 47
BstV1I GCAGC 3 cut(s) 56, 194, 210
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 2 cut(s) 155, 194
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 138, 196
CfoI GCGC 2 cut(s) 142, 173
Cfr10I RCCGGY 1 cut(s) 132
Csp6I GTAC 1 cut(s) 85
CviAII CATG 1 cut(s) 157
CviJI RGCY 4 cut(s) 47, 155, 185, 194
CviKI_1 RGCY 4 cut(s) 47, 155, 185, 194
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 186
DinI GGCGCC 1 cut(s) 141
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 47
EgeI GGCGCC 1 cut(s) 141
EheI GGCGCC 1 cut(s) 141
FaeI CATG 1 cut(s) 160
FaiI YATR 5 cut(s) 158, 221, 223, 225, 230
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 4 cut(s) 45, 143, 183, 199
Fsp4HI GCNGC 4 cut(s) 45, 143, 183, 199
GlaI GCGC 2 cut(s) 141, 172
GluI GCNGC 4 cut(s) 45, 143, 183, 199
HaeII RGCGCY 1 cut(s) 143
HaeIII GGCC 2 cut(s) 155, 194
HapII CCGG 2 cut(s) 75, 133
HhaI GCGC 2 cut(s) 142, 173
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 2 cut(s) 140, 171
HinP1I GCGC 2 cut(s) 140, 171
HpaII CCGG 2 cut(s) 75, 133
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 179, 191
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 79
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 2 cut(s) 140, 171
KasI GGCGCC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 124
LpnPI CCDG 7 cut(s) 15, 34, 61, 88, 122, 146, 208
Lsp1109I GCAGC 3 cut(s) 56, 194, 210
MaeII ACGT 1 cut(s) 79
MalI GATC 1 cut(s) 126
MbiI CCGCTC 1 cut(s) 165
MboI GATC 1 cut(s) 124
MboII GAAGA 1 cut(s) 93
MluCI AATT 1 cut(s) 17
Mly113I GGCGCC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 6 cut(s) 105, 109, 121, 124, 145, 184
MspI CCGG 2 cut(s) 75, 133
MspR9I CCNGG 1 cut(s) 49
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 3 cut(s) 142, 179, 191
NarI GGCGCC 1 cut(s) 140
NdeII GATC 1 cut(s) 124
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 141
PkrI GCNGC 4 cut(s) 46, 144, 184, 200
PluTI GGCGCC 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 141
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SatI GCNGC 4 cut(s) 45, 143, 183, 199
Sau3AI GATC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 49
SetI ASST 3 cut(s) 53, 82, 187
SfoI GGCGCC 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 1 cut(s) 17
SsiI CCGC 2 cut(s) 143, 165
SspDI GGCGCC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 47
TaiI ACGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 17
TatI WGTACW 1 cut(s) 84
TauI GCSGC 1 cut(s) 145
TscAI CASTG 1 cut(s) 68
TseI GCWGC 3 cut(s) 44, 182, 198
TspDTI ATGAA 2 cut(s) 44, 208
TspRI CASTG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.