Rroxscaffold_6G00399670

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0010027
Physical Location & Seq
Forward (+)
21699156 .. 21701507
2352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00399670.1

Sequence Viewer

Length: 294 bp
ATGGCGAAGTGGGTGGAATTATTGGATACAGGGGTCAGAATAGCAGCCAGGTTTCATTCTCATTGCCCACAAACCGGACGTTTGTACTACCACCCTCCCTCTTCCAACTCCTCCTCTCAAGACGATCATCACCACCACGCGCCGCTTTTCGACGCCATGATGAGCGGTTGCGCTGTCAAGGCAGCTAGGGAGGCCAGCAGCACCAATAACAATGACCACATGCAAGGGCAGATTCCGCGTTTCTTATTTGAGGATGACTTTATTACAGAACAAATTCTTGGTAGCTCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.85

Weight (kDa)

6.0

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 165
AccII CGCG 2 cut(s) 140, 238
AciI CCGC 3 cut(s) 143, 165, 236
AcsI RAATTY 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 74
AjnI CCWGG 1 cut(s) 47
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 2 cut(s) 185, 285
AluI AGCT 2 cut(s) 185, 285
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 3 cut(s) 44, 182, 198
ApoI RAATTY 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 273
AspLEI GCGC 2 cut(s) 142, 173
AsuHPI GGTGA 1 cut(s) 122
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BbvI GCAGC 3 cut(s) 56, 194, 210
BciT130I CCWGG 1 cut(s) 49
BciVI GTATCC 1 cut(s) 19
BfaI CTAG 1 cut(s) 186
BfuI GTATCC 1 cut(s) 19
BisI GCNGC 4 cut(s) 45, 143, 183, 199
BlsI GCNGC 4 cut(s) 46, 144, 184, 200
Bme1390I CCNGG 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 49
BpuEI CTTGAG 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 1 cut(s) 61
BseRI GAGGAG 2 cut(s) 100, 103
BseXI GCAGC 3 cut(s) 56, 194, 210
Bsh1236I CGCG 2 cut(s) 140, 238
BshFI GGCC 1 cut(s) 194
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 74
BsnI GGCC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 3 cut(s) 143, 165, 236
BspANI GGCC 1 cut(s) 194
BspFNI CGCG 2 cut(s) 140, 238
BsrBI CCGCTC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 61
BssMI GATC 1 cut(s) 124
BssNI GRCGYC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 196
BstF5I GGATG 1 cut(s) 259
BstFNI CGCG 2 cut(s) 140, 238
BstHHI GCGC 2 cut(s) 142, 173
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 3 cut(s) 179, 191, 235
BstNI CCWGG 1 cut(s) 49
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 47
BstUI CGCG 2 cut(s) 140, 238
BstV1I GCAGC 3 cut(s) 56, 194, 210
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 196
CfoI GCGC 2 cut(s) 142, 173
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 85
CviAII CATG 2 cut(s) 157, 220
CviJI RGCY 4 cut(s) 47, 185, 194, 285
CviKI_1 RGCY 4 cut(s) 47, 185, 194, 285
CviQI GTAC 1 cut(s) 85
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 47
FaeI CATG 2 cut(s) 160, 223
FaiI YATR 3 cut(s) 158, 221, 292
FatI CATG 2 cut(s) 156, 219
Fnu4HI GCNGC 4 cut(s) 45, 143, 183, 199
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 4 cut(s) 45, 143, 183, 199
FspBI CTAG 1 cut(s) 186
GlaI GCGC 2 cut(s) 141, 172
GluI GCNGC 4 cut(s) 45, 143, 183, 199
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 161
HhaI GCGC 2 cut(s) 142, 173
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 2 cut(s) 160, 223
Hin6I GCGC 2 cut(s) 140, 171
HinP1I GCGC 2 cut(s) 140, 171
HinfI GANTC 1 cut(s) 232
HpaII CCGG 1 cut(s) 75
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 1 cut(s) 119
Hpy99I CGWCG 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 191, 235
HpySE526I ACGT 1 cut(s) 79
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 2 cut(s) 160, 223
HspAI GCGC 2 cut(s) 140, 171
Kzo9I GATC 1 cut(s) 124
LpnPI CCDG 5 cut(s) 15, 34, 61, 88, 208
Lsp1109I GCAGC 3 cut(s) 56, 194, 210
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 79
MalI GATC 1 cut(s) 126
MbiI CCGCTC 1 cut(s) 165
MboI GATC 1 cut(s) 124
MboII GAAGA 1 cut(s) 93
MluCI AATT 2 cut(s) 17, 273
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 6 cut(s) 105, 109, 121, 124, 184, 244
MroXI GAANNNNTTC 1 cut(s) 273
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 49
MvaI CCWGG 1 cut(s) 49
MvnI CGCG 2 cut(s) 140, 238
MwoI GCNNNNNNNGC 3 cut(s) 179, 191, 235
NdeII GATC 1 cut(s) 124
NlaIII CATG 2 cut(s) 160, 223
NspI RCATGY 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 232
PkrI GCNGC 4 cut(s) 46, 144, 184, 200
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SatI GCNGC 4 cut(s) 45, 143, 183, 199
Sau3AI GATC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 49
SetI ASST 4 cut(s) 53, 82, 187, 287
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 2 cut(s) 17, 273
SsiI CCGC 3 cut(s) 143, 165, 236
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 47
TaiI ACGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 150
TasI AATT 2 cut(s) 17, 273
TatI WGTACW 1 cut(s) 84
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 1 cut(s) 232
TseI GCWGC 3 cut(s) 44, 182, 198
TspDTI ATGAA 1 cut(s) 44
XapI RAATTY 1 cut(s) 273
XceI RCATGY 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.