Rroxscaffold_4G00330640

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0010027
Physical Location & Seq
Forward (+)
64349994 .. 64353898
3905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00330640.1

Sequence Viewer

Length: 279 bp
ATGGGCATGAAGTTTGTGGAGCTTTTGGATCAGGGAGTCAGAGTGGCCGCCAGGTTTCACTCCAATTGCCCCCAGACCAGTCGCAAGTACTACCACCCTCCGGCGCCCAACCACCATGACGACAACCATCACCACCACCATCACGAAACCCACCACACTTTAGCCGGCGGCGACGCGACGGCGACGGCGGGGATGCATTTTAAGAATGCTGAGAGCAGCAATGACGAAGACGTTACCTATTTTGAGAAATTTGACATGAGAGATTTTTCAATGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.58

Weight (kDa)

6.19

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AccII CGCG 1 cut(s) 176
AciI CCGC 3 cut(s) 48, 168, 188
AclWI GGATC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 1 cut(s) 270
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
AlwI GGATC 1 cut(s) 36
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 216
ApoI RAATTY 1 cut(s) 248
AspLEI GCGC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 122
BanI GGYRCC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 228
BccI CCATC 2 cut(s) 135, 147
BceAI ACGGC 2 cut(s) 195, 201
BciT130I CCWGG 1 cut(s) 52
BfoI RGCGCY 1 cut(s) 107
BisI GCNGC 3 cut(s) 48, 169, 217
BlsI GCNGC 3 cut(s) 49, 170, 218
BmcAI AGTACT 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 104
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 103
BsiSI CCGG 2 cut(s) 101, 165
BslI CCNNNNNNNGG 1 cut(s) 100
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 3 cut(s) 48, 168, 188
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 1 cut(s) 105
BspPI GGATC 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 164
BssMI GATC 1 cut(s) 28
BssNI GRCGYC 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 50
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 228
BstV2I GAAGAC 1 cut(s) 234
BsuRI GGCC 1 cut(s) 47
BtsCI GGATG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 166
CfoI GCGC 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 164
CseI GACGC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 88
CviAII CATG 3 cut(s) 7, 116, 256
CviJI RGCY 3 cut(s) 22, 47, 164
CviKI_1 RGCY 3 cut(s) 22, 47, 164
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 210
DinI GGCGCC 1 cut(s) 105
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 50
EcoT22I ATGCAT 1 cut(s) 198
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
FaeI CATG 3 cut(s) 10, 119, 259
FaiI YATR 3 cut(s) 8, 117, 257
FatI CATG 3 cut(s) 6, 115, 255
FauI CCCGC 1 cut(s) 181
Fnu4HI GCNGC 3 cut(s) 48, 169, 217
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 3 cut(s) 48, 169, 217
GlaI GCGC 1 cut(s) 105
GluI GCNGC 3 cut(s) 48, 169, 217
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 1 cut(s) 47
HapII CCGG 2 cut(s) 101, 165
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 3 cut(s) 10, 119, 259
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HinfI GANTC 1 cut(s) 36
HpaII CCGG 2 cut(s) 101, 165
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 1 cut(s) 143
Hpy99I CGWCG 3 cut(s) 176, 181, 187
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 196
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 3 cut(s) 10, 119, 259
HspAI GCGC 1 cut(s) 104
KasI GGCGCC 1 cut(s) 103
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 7 cut(s) 17, 37, 64, 86, 91, 114, 178
Lsp1109I GCAGC 1 cut(s) 228
LweI GCATC 1 cut(s) 183
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 1 cut(s) 239
MfeI CAATTG 1 cut(s) 64
MluCI AATT 2 cut(s) 64, 248
Mly113I GGCGCC 1 cut(s) 104
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 1 cut(s) 108
Mph1103I ATGCAT 1 cut(s) 198
MroNI GCCGGC 1 cut(s) 164
MseI TTAA 1 cut(s) 201
MspI CCGG 2 cut(s) 101, 165
MspR9I CCNGG 1 cut(s) 52
MunI CAATTG 1 cut(s) 64
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 52
MvnI CGCG 1 cut(s) 176
NaeI GCCGGC 1 cut(s) 166
NarI GGCGCC 1 cut(s) 104
NdeII GATC 1 cut(s) 28
NgoMIV GCCGGC 1 cut(s) 164
NlaIII CATG 3 cut(s) 10, 119, 259
NlaIV GGNNCC 1 cut(s) 105
NsiI ATGCAT 1 cut(s) 198
PctI GAATGC 1 cut(s) 211
PdiI GCCGGC 1 cut(s) 166
PkrI GCNGC 3 cut(s) 49, 170, 218
PleI GAGTC 1 cut(s) 44
PluTI GGCGCC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 105
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 3 cut(s) 48, 169, 217
Sau3AI GATC 1 cut(s) 28
ScaI AGTACT 1 cut(s) 89
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 52
SetI ASST 4 cut(s) 24, 56, 234, 239
SfaNI GCATC 1 cut(s) 183
SfoI GGCGCC 1 cut(s) 105
Sse9I AATT 2 cut(s) 64, 248
SsiI CCGC 3 cut(s) 48, 168, 188
SspDI GGCGCC 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 50
TaiI ACGT 1 cut(s) 234
TasI AATT 2 cut(s) 64, 248
TatI WGTACW 1 cut(s) 87
TauI GCSGC 2 cut(s) 50, 171
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseI GCWGC 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 23
XapI RAATTY 1 cut(s) 248
ZrmI AGTACT 1 cut(s) 89
Zsp2I ATGCAT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.